Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Reverse (-)

6581658 .. 6583248

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCAGTGAAACCCAGCGATGCCTTCCCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAGTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTCTGCTGCTGCTGCTCCAGCTGTTGAAGCTGAGGCACCTGCAGCTGCAGCTGATGATGATGATGACATGGATCTCTTTGGTGACGAGACCGAAGAAGAAAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAGAAGGACACCAAGAAGCCTAAAGAGAGTGGAAAGTCTTCTGTGCTCATGGATGTTAAGCCATGGGATGATGAAACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGATGCCTGGTCTTTTCTGGGGAGCCTCAAAACTTGTACCAGTTGGTTATGGGATCAAGAAACTCACAATTATGTTCACGATTGTTGATGACCTCGTGTCCCCGGACAACCTCATTGAAGACTTCCTCACCTCAGAGCCTAACAACGAGTACATCCAGAGTTGTGACATTGTCGCTTTCAACAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

224

Amino Acids

24.2

Weight (kDa)

4.42

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	137 - 224	5.2e-30	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	274
AccIII	TCCGGA	1 cut(s)	83
AclWI	GGATC	2 cut(s)	318, 545
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	4 cut(s)	173, 228, 522, 635
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	266, 602, 664
AhdI	GACNNNNNGTC	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	208, 490
AluBI	AGCT	5 cut(s)	260, 269, 284, 290, 347
AluI	AGCT	5 cut(s)	260, 269, 284, 290, 347
Alw21I	GWGCWC	2 cut(s)	60, 417
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	318, 545
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	2 cut(s)	3, 216
ApeKI	GCWGC	9 cut(s)	122, 245, 248, 251, 281, 284, 287, 347, 365
Asp700I	GAANNNNTTC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	332, 604
AsuNHI	GCTAGC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	399, 609
Bbv12I	GWGCWC	2 cut(s)	60, 417
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	9 cut(s)	109, 232, 235, 238, 271, 293, 299, 334, 352
BceAI	ACGGC	2 cut(s)	110, 203
BciT130I	CCWGG	2 cut(s)	210, 492
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	3 cut(s)	279, 285, 348
BfuAI	ACCTGC	1 cut(s)	286
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	9 cut(s)	123, 246, 249, 252, 282, 285, 288, 348, 366
BlsI	GCNGC	9 cut(s)	124, 247, 250, 253, 283, 286, 289, 349, 367
Bme1390I	CCNGG	3 cut(s)	210, 492, 587
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	276, 508
BmrFI	CCNGG	3 cut(s)	210, 492, 587
BmsI	GCATC	2 cut(s)	136, 477
BmtI	GCTAGC	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	399, 609
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	5 cut(s)	48, 180, 208, 431, 585
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	3 cut(s)	131, 465, 524
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	210, 492
BseDI	CCNNGG	5 cut(s)	48, 180, 208, 431, 585
BseGI	GGATG	4 cut(s)	109, 427, 442, 636
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	261, 630
BseNI	ACTGG	3 cut(s)	131, 465, 524
BseRI	GAGGAG	3 cut(s)	47, 68, 368
BseXI	GCAGC	9 cut(s)	109, 232, 235, 238, 271, 293, 299, 334, 352
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	5, 218
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	60, 417
BsiSI	CCGG	3 cut(s)	66, 84, 587
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	2 cut(s)	5, 218
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	60, 417
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	19, 88, 310, 537
Bsp19I	CCATGG	1 cut(s)	431
BspANI	GGCC	2 cut(s)	5, 218
BspCNI	CTCAG	2 cut(s)	262, 629
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	276, 508
BspMAI	CTGCAG	3 cut(s)	283, 289, 352
BspMI	ACCTGC	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	318, 545
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	320
BsrI	ACTGG	3 cut(s)	131, 465, 524
BssECI	CCNNGG	5 cut(s)	48, 180, 208, 431, 585
BssMI	GATC	4 cut(s)	19, 88, 310, 537
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	2 cut(s)	210, 492
Bst6I	CTCTTC	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	270, 369, 616
BstDSI	CCRYGG	3 cut(s)	48, 180, 431
BstF5I	GGATG	4 cut(s)	109, 427, 442, 636
BstKTI	GATC	4 cut(s)	22, 91, 313, 540
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	19, 88, 310, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 257, 266, 281, 287
BstNI	CCWGG	2 cut(s)	210, 492
BstSCI	CCNGG	3 cut(s)	208, 490, 585
BstSFI	CTRYAG	3 cut(s)	279, 285, 348
BstV1I	GCAGC	9 cut(s)	109, 232, 235, 238, 271, 293, 299, 334, 352
BstV2I	GAAGAC	2 cut(s)	399, 609
BstX2I	RGATCY	2 cut(s)	19, 310
BstYI	RGATCY	2 cut(s)	19, 310
BsuRI	GGCC	2 cut(s)	5, 218
BtgI	CCRYGG	3 cut(s)	48, 180, 431
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	109, 427, 442, 636
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	172, 227, 521, 634
CviAII	CATG	4 cut(s)	307, 418, 432, 451
CviQI	GTAC	4 cut(s)	172, 227, 521, 634
DdeI	CTNAG	3 cut(s)	270, 369, 616
DpnI	GATC	4 cut(s)	21, 90, 312, 539
DpnII	GATC	4 cut(s)	19, 88, 310, 537
DriI	GACNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	208, 490
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	4 cut(s)	310, 421, 435, 454
FaiI	YATR	6 cut(s)	308, 419, 433, 452, 534, 557
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	4 cut(s)	306, 417, 431, 450
Fnu4HI	GCNGC	9 cut(s)	123, 246, 249, 252, 282, 285, 288, 348, 366
FokI	GGATG	4 cut(s)	116, 434, 449, 623
Fsp4HI	GCNGC	9 cut(s)	123, 246, 249, 252, 282, 285, 288, 348, 366
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	9 cut(s)	123, 246, 249, 252, 282, 285, 288, 348, 366
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 218
HapII	CCGG	3 cut(s)	66, 84, 587
Hin1II	CATG	4 cut(s)	310, 421, 435, 454
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	3 cut(s)	66, 84, 587
HphI	GGTGA	2 cut(s)	332, 604
Hpy166II	GTNNAC	2 cut(s)	118, 561
Hpy188I	TCNGA	2 cut(s)	19, 619
Hpy188III	TCNNGA	4 cut(s)	84, 541, 562, 640
Hpy8I	GTNNAC	2 cut(s)	118, 561
HpyAV	CCTTC	2 cut(s)	160, 367
HpyCH4V	TGCA	3 cut(s)	281, 287, 350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 257, 266, 281, 287
HpyF3I	CTNAG	3 cut(s)	270, 369, 616
Hsp92II	CATG	4 cut(s)	310, 421, 435, 454
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	19, 88, 310, 537
LmnI	GCTCC	3 cut(s)	55, 259, 506
Lsp1109I	GCAGC	9 cut(s)	109, 232, 235, 238, 271, 293, 299, 334, 352
LweI	GCATC	2 cut(s)	136, 477
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	7, 320, 647
MalI	GATC	4 cut(s)	21, 90, 312, 539
MboI	GATC	4 cut(s)	19, 88, 310, 537
MboII	GAAGA	6 cut(s)	344, 347, 399, 466, 476, 614
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	2 cut(s)	19, 310
MhlI	GDGCHC	2 cut(s)	60, 417
MluCI	AATT	3 cut(s)	92, 230, 552
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	3 cut(s)	260, 284, 290
MspI	CCGG	3 cut(s)	66, 84, 587
MspR9I	CCNGG	3 cut(s)	210, 492, 587
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	210, 492
MwoI	GCNNNNNNNGC	5 cut(s)	251, 257, 266, 281, 287
NciI	CCSGG	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	4 cut(s)	19, 88, 310, 537
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	310, 421, 435, 454
NlaIV	GGNNCC	2 cut(s)	276, 508
NmuCI	GTSAC	2 cut(s)	320, 647
PaqCI	CACCTGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	9 cut(s)	124, 247, 250, 253, 283, 286, 289, 349, 367
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	208, 490
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	208, 490
PspN4I	GGNNCC	2 cut(s)	276, 508
PstI	CTGCAG	3 cut(s)	283, 289, 352
PsuI	RGATCY	2 cut(s)	19, 310
PsyI	GACNNNGTC	1 cut(s)	653
PvuII	CAGCTG	3 cut(s)	260, 284, 290
RsaI	GTAC	4 cut(s)	173, 228, 522, 635
RsaNI	GTAC	4 cut(s)	172, 227, 521, 634
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	9 cut(s)	123, 246, 249, 252, 282, 285, 288, 348, 366
Sau3AI	GATC	4 cut(s)	19, 88, 310, 537
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	210, 492, 587
SduI	GDGCHC	2 cut(s)	60, 417
SfaNI	GCATC	2 cut(s)	136, 477
SfcI	CTRYAG	3 cut(s)	279, 285, 348
SmiMI	CAYNNNNRTG	1 cut(s)	554
Sse9I	AATT	3 cut(s)	92, 230, 552
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	208, 490, 585
StyI	CCWWGG	1 cut(s)	431
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	3 cut(s)	92, 230, 552
TatI	WGTACW	2 cut(s)	226, 633
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	2 cut(s)	320, 647
TseI	GCWGC	9 cut(s)	122, 245, 248, 251, 281, 284, 287, 347, 365
Tsp45I	GTSAC	2 cut(s)	320, 647
TspDTI	ATGAA	2 cut(s)	456, 467
TspGWI	ACGGA	2 cut(s)	37, 169
TspRI	CASTG	1 cut(s)	138
Tth111I	GACNNNGTC	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.