Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Forward (+)

2373887 .. 2374661

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCATCACCTTCTCAGATCTCTACACCGATGCCGGTCTCAAAGCCCTCGATGAGTTCCTCGCCGGCAAATCTTACATCTCCGGAGACAAGCTGACTTTGGATGACATCAAGGTCTACGCCGCCGTGTTGGAGAAGCCCGCCGGTTCTTTTGCCAATGTCAGCAAGTGGTACAACGCCGTTTCGTCCCAACTCGCTTCCACCTTCCCCGGCAAGGCTGCTGGAGTGAGAGTCAGCAGCGGCAAGGCTGAGGCTCTTGCACCCGCTCCCGCTGCCGCCGCTGGAGGCGATGACGATGACGATTTGGACCTCTTTGGCGACGAGACTGAGGAGGACAAGAAGGCCGAGGCGGAGTTGGCGGCAGCCAAAAAGGCGTCTACCAAGAAGAAGGAGAGTGGAAAATCCTCTGTTCTTTTGGATGTCAAGCCTTGGGACGATGAGACTGACATGAAGAAGCTCGAGGAGGCTGTTCGGAGTGTCAAGATGGAGGGTCTCTTCTGGGGCGCATCGAAATTGGTTTCTGTTGGTTACGGGATCAAGAAGTTGCAGATCATGCTCACCATTGTCGATGACCTTGTTTCCGTCGATGACCTCATCGAAGAGCAGCTTACTGTTGAGCCCCGCAATGAGTACATCCAGAGCTGCGACATTGTTGCCTTCAACAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

224

Amino Acids

23.94

Weight (kDa)

4.56

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	117, 377
AccIII	TCCGGA	1 cut(s)	83
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	2 cut(s)	173, 632
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	661
AluBI	AGCT	4 cut(s)	94, 457, 607, 642
AluI	AGCT	4 cut(s)	94, 457, 607, 642
Alw26I	GTCTC	5 cut(s)	44, 81, 317, 434, 497
AlwI	GGATC	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	2 cut(s)	3, 342
ApeKI	GCWGC	6 cut(s)	218, 237, 272, 362, 604, 642
ApoI	RAATTY	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	6 cut(s)	205, 249, 259, 374, 616, 629
BccI	CCATC	2 cut(s)	14, 478
BceAI	ACGGC	2 cut(s)	110, 164
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	5 cut(s)	44, 81, 317, 434, 497
BglI	GCCNNNNNGGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	22, 515
BpmI	CTGGAG	2 cut(s)	243, 303
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	2 cut(s)	44, 497
BsaJI	CCNNGG	3 cut(s)	208, 345, 428
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	3 cut(s)	35, 65, 143
Bse3DI	GCAATG	1 cut(s)	631
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	208, 345, 428
BseGI	GGATG	3 cut(s)	109, 424, 633
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	30, 240, 318
BseRI	GAGGAG	2 cut(s)	344, 476
BseXI	GCAGC	6 cut(s)	205, 249, 259, 374, 616, 629
BshFI	GGCC	2 cut(s)	5, 344
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	5 cut(s)	36, 66, 84, 144, 210
BslFI	GGGAC	2 cut(s)	172, 446
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	5 cut(s)	44, 81, 317, 434, 497
BsmFI	GGGAC	2 cut(s)	172, 446
BsnI	GGCC	2 cut(s)	5, 344
Bso31I	GGTCTC	2 cut(s)	44, 497
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	19, 534, 549
BspANI	GGCC	2 cut(s)	5, 344
BspCNI	CTCAG	3 cut(s)	29, 241, 319
BspEI	TCCGGA	1 cut(s)	83
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	594
BspTNI	GGTCTC	2 cut(s)	44, 497
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	631
BsrFI	RCCGGY	3 cut(s)	35, 65, 143
BssAI	RCCGGY	3 cut(s)	35, 65, 143
BssECI	CCNNGG	3 cut(s)	208, 345, 428
BssMI	GATC	3 cut(s)	19, 534, 549
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	500, 594
BstACI	GRCGYC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	2 cut(s)	67, 141
BstDEI	CTNAG	3 cut(s)	16, 249, 327
BstF5I	GGATG	3 cut(s)	109, 424, 633
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	3 cut(s)	22, 537, 552
BstMAI	GTCTC	5 cut(s)	44, 81, 317, 434, 497
BstMBI	GATC	3 cut(s)	19, 534, 549
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 278, 356, 371, 553
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	6 cut(s)	205, 249, 259, 374, 616, 629
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	5, 344
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	109, 424, 633
Cac8I	GCNNGC	2 cut(s)	67, 141
CfoI	GCGC	1 cut(s)	506
Cfr10I	RCCGGY	3 cut(s)	35, 65, 143
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	172, 631
CviAII	CATG	2 cut(s)	448, 553
CviQI	GTAC	2 cut(s)	172, 631
DdeI	CTNAG	3 cut(s)	16, 249, 327
DpnI	GATC	3 cut(s)	21, 536, 551
DpnII	GATC	3 cut(s)	19, 534, 549
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	500, 594
EarI	CTCTTC	2 cut(s)	500, 594
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	2 cut(s)	44, 497
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	2 cut(s)	451, 556
FaiI	YATR	2 cut(s)	449, 554
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	2 cut(s)	172, 446
FatI	CATG	2 cut(s)	447, 552
FauI	CCCGC	4 cut(s)	148, 271, 277, 629
FblI	GTMKAC	2 cut(s)	117, 377
FokI	GGATG	3 cut(s)	116, 431, 620
FriOI	GRGCYC	1 cut(s)	621
GlaI	GCGC	1 cut(s)	505
GsuI	CTGGAG	2 cut(s)	243, 303
HaeIII	GGCC	2 cut(s)	5, 344
HapII	CCGG	5 cut(s)	36, 66, 84, 144, 210
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	451, 556
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	5 cut(s)	36, 66, 84, 144, 210
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	2 cut(s)	118, 378
Hpy188I	TCNGA	2 cut(s)	19, 474
Hpy188III	TCNNGA	4 cut(s)	84, 481, 538, 637
Hpy8I	GTNNAC	2 cut(s)	118, 378
Hpy99I	CGWCG	2 cut(s)	323, 587
HpyAV	CCTTC	5 cut(s)	22, 214, 334, 382, 667
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4V	TGCA	2 cut(s)	260, 547
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 278, 356, 371, 553
HpyF3I	CTNAG	3 cut(s)	16, 249, 327
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	451, 556
HspAI	GCGC	1 cut(s)	504
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	19, 534, 549
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	9 cut(s)	49, 79, 97, 157, 207, 223, 267, 484, 650
Lsp1109I	GCAGC	6 cut(s)	205, 249, 259, 374, 616, 629
LweI	GCATC	2 cut(s)	22, 515
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	3 cut(s)	21, 536, 551
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	3 cut(s)	19, 534, 549
MboII	GAAGA	4 cut(s)	397, 463, 487, 611
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	621
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	512, 666
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	670
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	240, 272, 281
MspI	CCGG	5 cut(s)	36, 66, 84, 144, 210
MspR9I	CCNGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	5 cut(s)	272, 278, 356, 371, 553
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	19, 534, 549
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	451, 556
NmeAIII	GCCGAG	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	594
PdiI	GCCGGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	173, 632
RsaNI	GTAC	2 cut(s)	172, 631
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	670
Sau3AI	GATC	3 cut(s)	19, 534, 549
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	22, 515
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	512, 666
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	613
TaqI	TCGA	6 cut(s)	51, 459, 509, 567, 585, 597
TasI	AATT	2 cut(s)	512, 666
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	5 cut(s)	125, 243, 278, 281, 362
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TseI	GCWGC	6 cut(s)	218, 237, 272, 362, 604, 642
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	666
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	117, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.