Rorug04G0160000

Belongs to the EF-1-beta EF-1-delta family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011718
Physical Location & Seq
Forward (+)
27865481 .. 27866477
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0160000.1

Sequence Viewer

Length: 249 bp
ATGAAAACGTACCAAGTGAATTCCGATTTTCGTAAGGAGAGGGTGAGTTTGGAGGTGGACCGGCCTGTGGAGACAAAATCCGACCCGGAATTGGAATCTCCGATGAAGACGCGGTTGAAGGAAGAGCCACAGTTGAGGAGCGATGGTCCCTGGGAAGACATGATAAAATTTGATGACAAGCTCCTTACACGAGAATTCGATAATTTTCAGTTTGTTAATTTTACGGAGATTATGGCTAAACAAGCATGA

Protein Analysis

82

Amino Acids

9.83

Weight (kDa)

4.85

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12110 AT5G19510
fragaria_vesca FvH4_4g13950
malus_domestica MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica Prupe.5G005100_v2.0.a1
pyrus_communis pycom02g23230 pycom07g02830
rosa_chinensis RchiOBHm_Chr4g0419721
rosa_laevigata RLG00000007801
rosa_multiflora Rmu_sc0016868.1_g000008
rosa_roxburghii Rroxscaffold_5G00362560
rosa_rugosa Rorug04G0160000
rosa_samantha Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana Rw4G019040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 112
AcsI RAATTY 3 cut(s) 19, 167, 194
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 67, 91
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 65
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 3 cut(s) 19, 167, 194
AspS9I GGNCC 2 cut(s) 58, 146
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 2 cut(s) 58, 146
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 113, 162
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 65
Bme1390I CCNGG 2 cut(s) 86, 151
Bme18I GGWCC 2 cut(s) 58, 146
BmgT120I GGNCC 2 cut(s) 58, 146
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 86, 151
BpiI GAAGAC 2 cut(s) 113, 162
BpuMI CCSGG 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 149, 150
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 91
Bse118I RCCGGY 1 cut(s) 60
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 149, 150
BseLI CCNNNNNNNGG 2 cut(s) 67, 91
BseRI GAGGAG 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 61, 86
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 67, 91
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 1 cut(s) 64
BspACI CCGC 1 cut(s) 112
BspANI GGCC 1 cut(s) 64
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 149, 150
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 117
BstFNI CGCG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 84, 149
BstUI CGCG 1 cut(s) 112
BstV2I GAAGAC 2 cut(s) 113, 162
BsuRI GGCC 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 58, 146
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 160, 246
CviJI RGCY 4 cut(s) 64, 127, 181, 236
CviKI_1 RGCY 4 cut(s) 64, 127, 181, 236
CviQI GTAC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 58, 146
EcoRI GAATTC 2 cut(s) 19, 194
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 163, 249
FaiI YATR 3 cut(s) 161, 233, 247
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 159, 245
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 61, 86
HgaI GACGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 163, 249
HinfI GANTC 1 cut(s) 95
HpaII CCGG 2 cut(s) 61, 86
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 25, 82, 102
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 2 cut(s) 163, 249
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 138, 186
LpnPI CCDG 5 cut(s) 74, 78, 99, 136, 163
MaeII ACGT 1 cut(s) 8
MboII GAAGA 3 cut(s) 118, 134, 167
MluCI AATT 6 cut(s) 19, 89, 167, 194, 202, 217
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 33, 46, 129
MseI TTAA 1 cut(s) 216
MspI CCGG 2 cut(s) 61, 86
MspR9I CCNGG 2 cut(s) 86, 151
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 86
NlaIII CATG 2 cut(s) 163, 249
NlaIV GGNNCC 1 cut(s) 148
PasI CCCWGGG 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 58, 146
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 58, 146
ScrFI CCNGG 2 cut(s) 86, 151
SetI ASST 3 cut(s) 11, 57, 183
SinI GGWCC 2 cut(s) 58, 146
Sse9I AATT 6 cut(s) 19, 89, 167, 194, 202, 217
SsiI CCGC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 84, 149
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 198
TasI AATT 6 cut(s) 19, 89, 167, 194, 202, 217
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 17, 119
TspGWI ACGGA 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 58, 146
XapI RAATTY 3 cut(s) 19, 167, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.