Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Forward (+)

17500040 .. 17502324

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCCGTCACCTTCACAGATCTCTACACCGAAGCCGGCCTCAAGTCCCTCGAGGCCTACCTCTCCGGCAAAACCTACATCTCCGGAGATCAGCTGACGAAGGATGACATCAAGGTGTACGCGGCGGTGTCGGAGAAGCCAGGGAGTTCCTTCCCCAATGTAGGCAGGTGGTACGACAGCGTTTCGTCCCATCTCGCCAAAAGCTTTCCCGGAAAAGCTGTTGGTGTTAGTGTTAGCAACCAAGCTGCTCCGGCAGCTGCCGCTCCTGCCGCAGCACCTAAGGCTGCAGCAGAAGATGATGACGATCTTGATCTCTTCGGTGATGAAACAGAGGATGACAAGAAGGCAGCCGAGGAGATTCAGGCTGCTAAGAAGACTACCACCAAGAAGAAAGAGAGTGGGAAGTCCTCTGTTCTTCTGGATGTGAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTTGAAGAGGCTGTTAGAAGCATCGAAATGGAGGGCCTCTTTTGGGGTGCATCAAAACTGGTGGCAGTTGGTTATGGAATAAAGAAACTCCAGATCATGCTCACTATTGTTGATGATCTTGTGTCTGTGGACACTCTTATCGAGGAGCGCCTTACTGTTCCACCATGTGACGAGTGGATCCAGAGCTGTGACATCGTAGCCTTCAACAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

225

Amino Acids

24.19

Weight (kDa)

4.6

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	137 - 224	2.4e-30	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
AbsI	CCTCGAGG	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	4 cut(s)	122, 125, 261, 270
AclWI	GGATC	2 cut(s)	631, 644
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	2 cut(s)	119, 173
AfiI	CCNNNNNNNGG	2 cut(s)	161, 502
AgsI	TTSAA	2 cut(s)	464, 664
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	7 cut(s)	94, 204, 218, 245, 257, 460, 645
AluI	AGCT	7 cut(s)	94, 204, 218, 245, 257, 460, 645
AlwI	GGATC	2 cut(s)	631, 644
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	4 cut(s)	3, 37, 54, 493
ApeKI	GCWGC	8 cut(s)	245, 254, 257, 272, 284, 287, 347, 365
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	8 cut(s)	232, 244, 266, 271, 284, 299, 352, 359
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	141, 210
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	2 cut(s)	141, 210
BmsI	GCATC	2 cut(s)	489, 518
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	303, 309
BsaJI	CCNNGG	3 cut(s)	140, 351, 431
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 502
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	522
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	2 cut(s)	303, 309
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	140, 351, 431
BseGI	GGATG	4 cut(s)	109, 340, 427, 442
BseJI	GATNNNNATC	2 cut(s)	303, 309
BseLI	CCNNNNNNNGG	2 cut(s)	161, 502
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	2 cut(s)	368, 617
BseXI	GCAGC	8 cut(s)	232, 244, 266, 271, 284, 299, 352, 359
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	4 cut(s)	5, 39, 56, 495
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	5 cut(s)	36, 66, 84, 210, 251
BslFI	GGGAC	2 cut(s)	31, 172
BslI	CCNNNNNNNGG	2 cut(s)	161, 502
BsmFI	GGGAC	2 cut(s)	31, 172
BsnI	GGCC	4 cut(s)	5, 39, 56, 495
BsoBI	CYCGRG	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
BspACI	CCGC	4 cut(s)	122, 125, 261, 270
BspANI	GGCC	4 cut(s)	5, 39, 56, 495
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	638
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	631, 644
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	140, 351, 431
BssMI	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	2 cut(s)	320, 459
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	279, 369
BstF5I	GGATG	4 cut(s)	109, 340, 427, 442
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	7 cut(s)	22, 91, 307, 313, 555, 577, 639
BstMBI	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 254, 260, 266, 269, 281
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	139, 208
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	8 cut(s)	232, 244, 266, 271, 284, 299, 352, 359
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	19, 636
BstYI	RGATCY	2 cut(s)	19, 636
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	5, 39, 56, 495
BtsCI	GGATG	4 cut(s)	109, 340, 427, 442
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	118, 172
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	3 cut(s)	451, 556, 624
CviQI	GTAC	2 cut(s)	118, 172
DdeI	CTNAG	2 cut(s)	279, 369
DpnI	GATC	7 cut(s)	21, 90, 306, 312, 554, 576, 638
DpnII	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
DraIII	CACNNNGTG	1 cut(s)	626
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	320, 459
EarI	CTCTTC	2 cut(s)	320, 459
Eco130I	CCWWGG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	3 cut(s)	454, 559, 627
FaiI	YATR	4 cut(s)	452, 534, 557, 625
FaqI	GGGAC	2 cut(s)	31, 172
FatI	CATG	3 cut(s)	450, 555, 623
FokI	GGATG	4 cut(s)	116, 347, 434, 449
GlaI	GCGC	1 cut(s)	608
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	4 cut(s)	5, 39, 56, 495
HapII	CCGG	5 cut(s)	36, 66, 84, 210, 251
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	454, 559, 627
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HindIII	AAGCTT	2 cut(s)	202, 458
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	5 cut(s)	36, 66, 84, 210, 251
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	118, 589
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	5 cut(s)	84, 308, 419, 550, 640
Hpy8I	GTNNAC	2 cut(s)	118, 589
HpyAV	CCTTC	5 cut(s)	22, 94, 160, 337, 670
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4V	TGCA	2 cut(s)	287, 509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 254, 260, 266, 269, 281
HpyF3I	CTNAG	2 cut(s)	279, 369
Hsp92II	CATG	3 cut(s)	454, 559, 627
HspAI	GCGC	1 cut(s)	607
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
LmnI	GCTCC	3 cut(s)	253, 268, 604
Lsp1109I	GCAGC	8 cut(s)	232, 244, 266, 271, 284, 299, 352, 359
LweI	GCATC	2 cut(s)	489, 518
MaeIII	GTNAC	3 cut(s)	7, 626, 647
MalI	GATC	7 cut(s)	21, 90, 306, 312, 554, 576, 638
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
MboII	GAAGA	7 cut(s)	305, 307, 385, 400, 407, 466, 476
MflI	RGATCY	2 cut(s)	19, 636
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	1 cut(s)	673
MslI	CAYNNNNRTG	2 cut(s)	113, 485
MspA1I	CMGCKG	2 cut(s)	94, 257
MspI	CCGG	5 cut(s)	36, 66, 84, 210, 251
MspR9I	CCNGG	2 cut(s)	141, 210
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	6 cut(s)	251, 254, 260, 266, 269, 281
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	454, 559, 627
NlaIV	GGNNCC	1 cut(s)	638
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	3 cut(s)	7, 626, 647
PaeR7I	CTCGAG	1 cut(s)	50
PaqCI	CACCTGC	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	493
PspXI	VCTCGAGB	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	19, 636
PvuII	CAGCTG	2 cut(s)	94, 257
RsaI	GTAC	2 cut(s)	119, 173
RsaNI	GTAC	2 cut(s)	118, 172
RseI	CAYNNNNRTG	2 cut(s)	113, 485
SaqAI	TTAA	1 cut(s)	673
Sau3AI	GATC	7 cut(s)	19, 88, 304, 310, 552, 574, 636
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	141, 210
SfaNI	GCATC	2 cut(s)	489, 518
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	113, 485
SmlI	CTYRAG	2 cut(s)	41, 50
SmoI	CTYRAG	2 cut(s)	41, 50
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	4 cut(s)	122, 125, 261, 270
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	139, 208
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	51, 483, 600
TauI	GCSGC	3 cut(s)	125, 263, 272
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TseFI	GTSAC	3 cut(s)	7, 626, 647
TseI	GCWGC	8 cut(s)	245, 254, 257, 272, 284, 287, 347, 365
Tsp45I	GTSAC	3 cut(s)	7, 626, 647
TspDTI	ATGAA	3 cut(s)	339, 456, 467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.