Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Forward (+)

618202 .. 619324

Gene Structure 1123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCCATTACATTCTCAGATCTCTACACAGAAGCCGGCCTCAAGTCCCTCGACGACTTCCTCGCCGGAAAATCTTACATCTCCGGAGACCAGCTTACTCTGGATGACATAAAGGTGTACGCAGCGGTGTTGGGGAAGCCCGATTCCTTTGCGAATGTGAGCAAGTGGTACGACTGCGTTTCATCCCAACTCGCCGCAAACTTCCCTGGCAAGGCAGTCGGAGTCAGAATCGGAAGCGGCAAGGCTGCTGCTCCTGCTGCTCCTGCTGCAGCCGGAGGAGATGACGACGACGACTTGGATCTCTTCGGTGATGAAACCGAGGAGGACAAGAAGGCAGAAGCAGAGAGGGAGGCAGCCAAAAAGGCATCTACCAAGAAGAAGGAGAGCGGCAAATCCTCTGTTCTTCTGGATGTGAAGCCTTGGGATGATGAAACTGACATGAAGAAGCTCGAAGAGGCTGTTCGCAGTGTGGAGATGGAGGGTCTCTTCTGGGGAGCATCAAAATTGGTTGCAGTTGGTTATGGGATCAAGAAGTTGCAGATCATGCTCACCATTGTCGATGACCTTGTCTCCGTCGATGACCTCATTGAGGAGCAGCTTACTGCTGAGCCACGCAACGAGTATATCCAGAGCTGTGACATTGTTGCCTTCAACAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

221

Amino Acids

23.73

Weight (kDa)

4.44

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	4 cut(s)	125, 195, 237, 387
AclWI	GGATC	2 cut(s)	306, 533
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	657
AfaI	GTAC	2 cut(s)	119, 170
AfiI	CCNNNNNNNGG	2 cut(s)	211, 589
AgsI	TTSAA	1 cut(s)	652
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	4 cut(s)	94, 448, 598, 633
AluI	AGCT	4 cut(s)	94, 448, 598, 633
Alw26I	GTCTC	3 cut(s)	81, 488, 574
AlwI	GGATC	2 cut(s)	306, 533
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	2 cut(s)	3, 37
ApeKI	GCWGC	8 cut(s)	122, 245, 248, 257, 266, 269, 353, 595
ApoI	RAATTY	1 cut(s)	657
AsuHPI	GGTGA	2 cut(s)	320, 541
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	8 cut(s)	134, 232, 235, 244, 253, 281, 365, 607
BccI	CCATC	1 cut(s)	469
BcgI	CGANNNNNNTGC	4 cut(s)	131, 165, 199, 233
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	3 cut(s)	81, 488, 574
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	19
BlpI	GCTNAGC	1 cut(s)	606
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	374, 506
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	81, 488
BsaJI	CCNNGG	3 cut(s)	205, 318, 419
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 589
Bse118I	RCCGGY	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	205, 318, 419
BseGI	GGATG	4 cut(s)	109, 182, 415, 430
BseLI	CCNNNNNNNGG	2 cut(s)	211, 589
BseMII	CTCAG	2 cut(s)	30, 597
BseRI	GAGGAG	3 cut(s)	291, 335, 605
BseXI	GCAGC	8 cut(s)	134, 232, 235, 244, 253, 281, 365, 607
BshFI	GGCC	2 cut(s)	5, 39
BsiSI	CCGG	4 cut(s)	36, 66, 84, 273
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	211, 589
BsmAI	GTCTC	3 cut(s)	81, 488, 574
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	5, 39
Bso31I	GGTCTC	2 cut(s)	81, 488
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	19, 298, 525, 540
Bsp1720I	GCTNAGC	1 cut(s)	606
BspACI	CCGC	4 cut(s)	125, 195, 237, 387
BspANI	GGCC	2 cut(s)	5, 39
BspCNI	CTCAG	2 cut(s)	29, 598
BspEI	TCCGGA	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	2 cut(s)	306, 533
BspTNI	GGTCTC	2 cut(s)	81, 488
BsrBI	CCGCTC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	205, 318, 419
BssMI	GATC	4 cut(s)	19, 298, 525, 540
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	3 cut(s)	308, 447, 491
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	16, 606
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	4 cut(s)	109, 182, 415, 430
BstKTI	GATC	4 cut(s)	22, 301, 528, 543
BstMAI	GTCTC	3 cut(s)	81, 488, 574
BstMBI	GATC	4 cut(s)	19, 298, 525, 540
BstMWI	GCNNNNNNNGC	6 cut(s)	254, 257, 263, 266, 362, 544
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	8 cut(s)	134, 232, 235, 244, 253, 281, 365, 607
BstX2I	RGATCY	2 cut(s)	19, 298
BstYI	RGATCY	2 cut(s)	19, 298
BsuRI	GGCC	2 cut(s)	5, 39
BtsCI	GGATG	4 cut(s)	109, 182, 415, 430
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	118, 169
CviAII	CATG	2 cut(s)	439, 544
CviQI	GTAC	2 cut(s)	118, 169
DdeI	CTNAG	2 cut(s)	16, 606
DpnI	GATC	4 cut(s)	21, 300, 527, 542
DpnII	GATC	4 cut(s)	19, 298, 525, 540
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	308, 447, 491
EarI	CTCTTC	3 cut(s)	308, 447, 491
Eco130I	CCWWGG	1 cut(s)	419
Eco31I	GGTCTC	2 cut(s)	81, 488
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	442, 547
FaiI	YATR	5 cut(s)	110, 440, 522, 545, 624
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	438, 543
FokI	GGATG	4 cut(s)	116, 169, 422, 437
HaeIII	GGCC	2 cut(s)	5, 39
HapII	CCGG	4 cut(s)	36, 66, 84, 273
Hin1II	CATG	2 cut(s)	442, 547
HinfI	GANTC	3 cut(s)	143, 222, 228
HpaII	CCGG	4 cut(s)	36, 66, 84, 273
HphI	GGTGA	2 cut(s)	320, 541
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	19, 221, 227, 233
Hpy188III	TCNNGA	5 cut(s)	84, 101, 407, 529, 628
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	4 cut(s)	56, 290, 293, 578
HpyAV	CCTTC	3 cut(s)	325, 373, 658
HpyCH4V	TGCA	3 cut(s)	269, 512, 538
HpyF10VI	GCNNNNNNNGC	6 cut(s)	254, 257, 263, 266, 362, 544
HpyF3I	CTNAG	2 cut(s)	16, 606
Hsp92II	CATG	2 cut(s)	442, 547
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	19, 298, 525, 540
LmnI	GCTCC	4 cut(s)	256, 265, 494, 592
Lsp1109I	GCAGC	8 cut(s)	134, 232, 235, 244, 253, 281, 365, 607
LweI	GCATC	2 cut(s)	374, 506
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	4 cut(s)	21, 300, 527, 542
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	4 cut(s)	19, 298, 525, 540
MboII	GAAGA	6 cut(s)	295, 388, 395, 454, 464, 478
MflI	RGATCY	2 cut(s)	19, 298
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	503, 657
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	199
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	661
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	4 cut(s)	36, 66, 84, 273
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	254, 257, 263, 266, 362, 544
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	4 cut(s)	19, 298, 525, 540
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	442, 547
NmuCI	GTSAC	1 cut(s)	635
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	143, 228
PflFI	GACNNNGTC	1 cut(s)	566
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	19, 298
PsyI	GACNNNGTC	1 cut(s)	566
RsaI	GTAC	2 cut(s)	119, 170
RsaNI	GTAC	2 cut(s)	118, 169
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	661
Sau3AI	GATC	4 cut(s)	19, 298, 525, 540
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	7 cut(s)	96, 117, 450, 567, 585, 600, 635
SfaNI	GCATC	2 cut(s)	374, 506
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	503, 657
SsiI	CCGC	4 cut(s)	125, 195, 237, 387
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	419
TaqI	TCGA	4 cut(s)	51, 450, 558, 576
TasI	AATT	2 cut(s)	503, 657
TauI	GCSGC	3 cut(s)	197, 240, 390
TfiI	GAWTC	2 cut(s)	143, 228
Tru1I	TTAA	1 cut(s)	661
Tru9I	TTAA	1 cut(s)	661
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	8 cut(s)	122, 245, 248, 257, 266, 269, 353, 595
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	171, 327, 444, 455
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	566
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.