Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Forward (+)

3416145 .. 3416931

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1040800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGGGTCTCTTCTGGGGCGCATCGAAATTGGTTTCCGTTGGTTACGGCATCAAAAAGTTGCAGATCATGCTCACCATTGTCGATGACCTTGTTTCCGTCGATGACCTCATCGAAGAGCAGCTTACCGTTGAGCCCCGCAACGAGTATATCCAGAGCTGCGACATTGTTGCCTTCAACAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

63

Amino Acids

6.99

Weight (kDa)

4.28

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	1 - 62	1.8e-18	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	2 cut(s)	124, 159
AluI	AGCT	2 cut(s)	124, 159
Alw26I	GTCTC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	121, 159
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	133, 146
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcoDI	GTCTC	1 cut(s)	14
BisI	GCNGC	2 cut(s)	122, 160
BlsI	GCNGC	2 cut(s)	123, 161
BmsI	GCATC	2 cut(s)	32, 60
BsaI	GGTCTC	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	133, 146
BsmAI	GTCTC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	14
BssMI	GATC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	17, 111
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	133, 146
CfoI	GCGC	1 cut(s)	23
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	124, 136, 159
CviKI_1	RGCY	3 cut(s)	124, 136, 159
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	17, 111
EarI	CTCTTC	2 cut(s)	17, 111
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	73
FaiI	YATR	2 cut(s)	71, 150
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	122, 160
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	122, 160
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	122, 160
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HphI	GGTGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	66
LguI	GCTCTTC	1 cut(s)	111
LpnPI	CCDG	1 cut(s)	167
Lsp1109I	GCAGC	2 cut(s)	133, 146
LweI	GCATC	2 cut(s)	32, 60
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	2 cut(s)	4, 128
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	29, 183
MnlI	CCTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	123, 161
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	187
SatI	GCNGC	2 cut(s)	122, 160
Sau3AI	GATC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	4 cut(s)	93, 111, 126, 161
SfaNI	GCATC	2 cut(s)	32, 60
SgeI	CNNG	6 cut(s)	28, 82, 104, 150, 157, 166
Sse9I	AATT	2 cut(s)	29, 183
SsiI	CCGC	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	4 cut(s)	26, 84, 102, 114
TasI	AATT	2 cut(s)	29, 183
Tru1I	TTAA	1 cut(s)	187
Tru9I	TTAA	1 cut(s)	187
TseI	GCWGC	2 cut(s)	121, 159
TspGWI	ACGGA	2 cut(s)	28, 88
XapI	RAATTY	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.