Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Reverse (-)

38622387 .. 38624976

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCGTCACCTTCACAGATCTCTACACCGAAGCCGGCCTCAAGTCCCTCGAGGCCTACCTCTCCGGCAAAACCTACATCTCCGGAGATCAGCTGACGAAGGATGACATAAAGGTGTACGCAGCCGTGTTGGAGAAGCCAGCGAGTTCCTTCCCCAATGTGAGCAAGTGGTACGACTGCGTTTCGTCCCAGCTCGCCAAAAGCTTCCCTGGAAAAGCTGTTGGTGTCAGAGTAAGCAACCAAGCTGCTCCAGCAGGAGCTGCTATTCCTGCCGCGGCACCAAAGGCTGCAGCAGAAGATGATGATGACCTTGATCTCTTCGGTGATGAAACAGAGGAGGACAAGAAGGCAGCAGAGGAGATTCAGGCAGCTAAGAAGCCTTCCGCCAAGAAGAAAGAGAGTGGAAAATCCTCTGTCCTTCTGGATGTGAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTTGAAGAGGCTGTTAGAAGCATTGAAATGGAGGGTCTCTTCTGGGGTGCATGTATGGCTTCTTTTATCAATATATTGTTTTGCTTTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

184

Amino Acids

19.85

Weight (kDa)

4.66

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	138 - 171	8e-11	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	277
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	3 cut(s)	273, 275, 384
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	119, 173
AgsI	TTSAA	2 cut(s)	467, 488
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	8 cut(s)	94, 193, 204, 218, 245, 260, 371, 463
AluI	AGCT	8 cut(s)	94, 193, 204, 218, 245, 260, 371, 463
Alw26I	GTCTC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	3 cut(s)	3, 37, 54
ApeKI	GCWGC	7 cut(s)	122, 245, 260, 287, 290, 350, 368
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	7 cut(s)	134, 232, 247, 274, 302, 362, 380
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	288
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	9 cut(s)	123, 246, 261, 273, 276, 288, 291, 351, 369
BlsI	GCNGC	9 cut(s)	124, 247, 262, 274, 277, 289, 292, 352, 370
Bme1390I	CCNGG	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	208, 273, 434
BsaWI	WCCGGW	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	208, 273, 434
BseGI	GGATG	3 cut(s)	109, 430, 445
BseRI	GAGGAG	2 cut(s)	350, 371
BseXI	GCAGC	7 cut(s)	134, 232, 247, 274, 302, 362, 380
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	5, 39, 56
BshNI	GGYRCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	36, 66, 84
BslFI	GGGAC	2 cut(s)	31, 172
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	31, 172
BsnI	GGCC	3 cut(s)	5, 39, 56
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	19, 88, 313
BspACI	CCGC	3 cut(s)	273, 275, 384
BspANI	GGCC	3 cut(s)	5, 39, 56
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	208, 273, 434
BssMI	GATC	3 cut(s)	19, 88, 313
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	210
Bst6I	CTCTTC	3 cut(s)	323, 462, 506
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	37, 141, 195
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	109, 430, 445
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	3 cut(s)	22, 91, 316
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	3 cut(s)	19, 88, 313
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 260, 269, 284, 518
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	7 cut(s)	134, 232, 247, 274, 302, 362, 380
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	5, 39, 56
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	109, 430, 445
Cac8I	GCNNGC	3 cut(s)	37, 141, 195
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	118, 172
CviAII	CATG	2 cut(s)	454, 513
CviQI	GTAC	2 cut(s)	118, 172
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	21, 90, 315
DpnII	GATC	3 cut(s)	19, 88, 313
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	323, 462, 506
EarI	CTCTTC	3 cut(s)	323, 462, 506
EciI	GGCGGA	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	2 cut(s)	457, 516
FaiI	YATR	5 cut(s)	110, 455, 514, 518, 536
FaqI	GGGAC	2 cut(s)	31, 172
FatI	CATG	2 cut(s)	453, 512
Fnu4HI	GCNGC	9 cut(s)	123, 246, 261, 273, 276, 288, 291, 351, 369
FokI	GGATG	3 cut(s)	116, 437, 452
Fsp4HI	GCNGC	9 cut(s)	123, 246, 261, 273, 276, 288, 291, 351, 369
GluI	GCNGC	9 cut(s)	123, 246, 261, 273, 276, 288, 291, 351, 369
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	5, 39, 56
HapII	CCGG	3 cut(s)	36, 66, 84
Hin1II	CATG	2 cut(s)	457, 516
HindIII	AAGCTT	2 cut(s)	202, 461
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	3 cut(s)	36, 66, 84
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	84, 422
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	6 cut(s)	22, 94, 160, 340, 390, 428
HpyCH4V	TGCA	2 cut(s)	290, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 260, 269, 284, 518
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	457, 516
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	19, 88, 313
LmnI	GCTCC	2 cut(s)	253, 257
Lsp1109I	GCAGC	7 cut(s)	134, 232, 247, 274, 302, 362, 380
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	21, 90, 315
MboI	GATC	3 cut(s)	19, 88, 313
MboII	GAAGA	6 cut(s)	308, 310, 403, 469, 479, 493
MflI	RGATCY	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	113, 488
MspA1I	CMGCKG	2 cut(s)	94, 275
MspI	CCGG	3 cut(s)	36, 66, 84
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	5 cut(s)	251, 260, 269, 284, 518
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	19, 88, 313
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	457, 516
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	516
PaeR7I	CTCGAG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	9 cut(s)	124, 247, 262, 274, 277, 289, 292, 352, 370
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	279
PspXI	VCTCGAGB	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	119, 173
RsaNI	GTAC	2 cut(s)	118, 172
RseI	CAYNNNNRTG	2 cut(s)	113, 488
SacII	CCGCGG	1 cut(s)	276
SatI	GCNGC	9 cut(s)	123, 246, 261, 273, 276, 288, 291, 351, 369
Sau3AI	GATC	3 cut(s)	19, 88, 313
ScrFI	CCNGG	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	276
SgrBI	CCGCGG	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	113, 488
SmlI	CTYRAG	2 cut(s)	41, 50
SmoI	CTYRAG	2 cut(s)	41, 50
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	273, 275, 384
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	434
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	2 cut(s)	275, 278
TfiI	GAWTC	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	7 cut(s)	122, 245, 260, 287, 290, 350, 368
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	342, 459, 470
XceI	RCATGY	1 cut(s)	516
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.