Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Forward (+)

7885576 .. 7886024

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1099500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCATCACCTTCTCAGATCTCTACACTGATGCCGGTCTCAAAGCCCTCGACGAGTTCCTCGCCGGCAAATCTTACATCTCCGGAGAGAAGCTGACTTTGGATGACATCAAGGTCTACACCGCCGTGTTGGAGAAGCCCGCCGGTTCTTTTGCCAATGTGAGCAAGTGGTACGACGCCGTTTTGTTCCAACTCGCTTCCACCTTCCCCGGGAAGGCCGCCGGAGTGAGAGTCAGCAGCGGCAAGGCTGGGACTGCTGCTCCCGTTCCCGCTGCCGCCGCTGGAGGTGATGACGATGACGATTTGGACCTCTTTGGCGACGAGACTGAGGAGGACAAGAAGGCCGTTCGGAGTGTCGAGATGGAGGATCATGCTCACCATTGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

130

Amino Acids

13.67

Weight (kDa)

4.56

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	7 cut(s)	123, 141, 219, 240, 270, 276, 279
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	210, 214
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	44, 317
AlwI	GGATC	1 cut(s)	375
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	3 cut(s)	3, 216, 342
ApeKI	GCWGC	3 cut(s)	237, 257, 272
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	210, 211
AsuHPI	GGTGA	2 cut(s)	299, 368
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	244, 249, 259
BccI	CCATC	2 cut(s)	14, 355
BceAI	ACGGC	3 cut(s)	110, 164, 329
BcnI	CCSGG	2 cut(s)	210, 211
BcoDI	GTCTC	2 cut(s)	44, 317
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	7 cut(s)	219, 238, 241, 258, 273, 276, 279
BlsI	GCNGC	7 cut(s)	220, 239, 242, 259, 274, 277, 280
Bme1390I	CCNGG	2 cut(s)	210, 211
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	307
BmrFI	CCNGG	2 cut(s)	210, 211
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	210, 211
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	208, 209
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 244, 246, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 214
Bse118I	RCCGGY	3 cut(s)	35, 65, 143
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	208, 209
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	210, 214
BseMII	CTCAG	2 cut(s)	30, 318
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	244, 249, 259
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	3 cut(s)	5, 218, 344
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	6 cut(s)	36, 66, 84, 144, 210, 222
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	210, 214
BsmAI	GTCTC	2 cut(s)	44, 317
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	5, 218, 344
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	19, 367
BspACI	CCGC	7 cut(s)	123, 141, 219, 240, 270, 276, 279
BspANI	GGCC	3 cut(s)	5, 218, 344
BspCNI	CTCAG	2 cut(s)	29, 319
BspEI	TCCGGA	1 cut(s)	83
BspPI	GGATC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	3 cut(s)	35, 65, 143
BssAI	RCCGGY	3 cut(s)	35, 65, 143
BssECI	CCNNGG	2 cut(s)	208, 209
BssMI	GATC	2 cut(s)	19, 367
BssNI	GRCGYC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	67, 141
BstDEI	CTNAG	2 cut(s)	16, 327
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	22, 370
BstMAI	GTCTC	2 cut(s)	44, 317
BstMBI	GATC	2 cut(s)	19, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 278
BstSCI	CCNGG	2 cut(s)	208, 209
BstV1I	GCAGC	3 cut(s)	244, 249, 259
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	5, 218, 344
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	67, 141
Cfr10I	RCCGGY	3 cut(s)	35, 65, 143
Cfr13I	GGNCC	1 cut(s)	307
Cfr9I	CCCGGG	1 cut(s)	209
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	7 cut(s)	5, 47, 94, 139, 218, 248, 344
CviKI_1	RGCY	7 cut(s)	5, 47, 94, 139, 218, 248, 344
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	16, 327
DpnI	GATC	2 cut(s)	21, 369
DpnII	GATC	2 cut(s)	19, 367
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	209
FaeI	CATG	1 cut(s)	374
FaiI	YATR	1 cut(s)	372
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	370
FauI	CCCGC	2 cut(s)	148, 277
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	7 cut(s)	219, 238, 241, 258, 273, 276, 279
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	7 cut(s)	219, 238, 241, 258, 273, 276, 279
GluI	GCNGC	7 cut(s)	219, 238, 241, 258, 273, 276, 279
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	5, 218, 344
HapII	CCGG	6 cut(s)	36, 66, 84, 144, 210, 222
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	374
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	6 cut(s)	36, 66, 84, 144, 210, 222
HphI	GGTGA	2 cut(s)	299, 368
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	19, 351
Hpy188III	TCNNGA	2 cut(s)	84, 358
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	3 cut(s)	56, 179, 323
HpyAV	CCTTC	4 cut(s)	22, 208, 214, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 278
HpyF3I	CTNAG	2 cut(s)	16, 327
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	19, 367
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	49, 79, 97, 157, 223, 234, 235, 267
Lsp1109I	GCAGC	3 cut(s)	244, 249, 259
LweI	GCATC	1 cut(s)	22
MalI	GATC	2 cut(s)	21, 369
MboI	GATC	2 cut(s)	19, 367
MflI	RGATCY	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	2 cut(s)	111, 214
MnlI	CCTC	7 cut(s)	59, 71, 278, 320, 322, 325, 358
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	240, 272, 281
MspI	CCGG	6 cut(s)	36, 66, 84, 144, 210, 222
MspR9I	CCNGG	2 cut(s)	210, 211
MwoI	GCNNNNNNNGC	2 cut(s)	254, 278
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	210, 211
NdeII	GATC	2 cut(s)	19, 367
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	374
OliI	CACNNNNGTG	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	67
PkrI	GCNGC	7 cut(s)	220, 239, 242, 259, 274, 277, 280
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	7 cut(s)	219, 238, 241, 258, 273, 276, 279
Sau3AI	GATC	2 cut(s)	19, 367
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	210, 211
SetI	ASST	6 cut(s)	14, 96, 117, 206, 289, 312
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	307
SmaI	CCCGGG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	125
SsiI	CCGC	7 cut(s)	123, 141, 219, 240, 270, 276, 279
StyD4I	CCNGG	2 cut(s)	208, 209
TaqI	TCGA	3 cut(s)	51, 357, 385
TauI	GCSGC	4 cut(s)	221, 243, 278, 281
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	3 cut(s)	237, 257, 272
TspMI	CCCGGG	1 cut(s)	209
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	307
XmaI	CCCGGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.