Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011718

Physical Location & Seq

Genomic Coordinates Reverse (-)

43583132 .. 43585410

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCCGTCACCTTCACAGATCTCTACACCGAAGCCGGCCTCAAGTCCCTCGAGGCCTACCTCTCCGGCAAAACCTACATCTCCGGAGATCAGCTGACGAAGGATGACATCAAGGTGTACGCGGCCGTGTTGGAGAAGCCAGCGGGTTCCTTCCCCAATGTGAGCAAGTGGTACGACTGCGTTTCGTCCCAGCTCGCCAAAAGCTTCCCCGGAAAAGCTGCTGGTGTCAGAGTAAGCAACCAAGCTGCTCCAGCAGGAGCTGCTCCTGCCGCGGCACCGAAGGCTGCAGCAGAAGATGATGATGACCTTGATCTCTTCGGTGATGAAACAGAGGAGGACAAGAAGGCAGCAGAGGAGATTCAGGCAGCTAAGAAGCCTTCCGCCAAGAAGAAAGAGAGTGGAAAATCCTCTGTCCTTCTGGATGTGAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTTGAAGAGGCTGTTAGAAGCATTGAAATGGAGGGTCTCTTCTGGGGTGCATCAAAACTGGTGCCAGTTGGTTATGGGATAAAGAAGCTCCAGATCATGCTCACTATTGTCGATGATCTGGTGTCTGTGGATACTCTCATCGAGGAGCGTCTCACTGTTGAGCCGTGTGATGAGTGGATCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

224

Amino Acids

24.26

Weight (kDa)

4.58

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1_GNE	PF00736	137 - 224	1.1e-31	EF-1 guanine nucleotide exchange domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12110 AT5G19510
fragaria_vesca	FvH4_4g13950
malus_domestica	MD02G1099500.v1.1 MD02G1271700.v1.1 MD07G1040800.v1.1
prunus_persica	Prupe.5G005100_v2.0.a1
pyrus_communis	pycom02g23230 pycom07g02830
rosa_chinensis	RchiOBHm_Chr4g0419721
rosa_laevigata	RLG00000007801
rosa_multiflora	Rmu_sc0016868.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362560
rosa_rugosa	Rorug04G0160000
rosa_samantha	Rh4AG221200 Rh4BG223200 Rh4CG234500 Rh4DG220200
rosa_wichuraiana	Rw4G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	274, 520
AccII	CGCG	2 cut(s)	122, 272
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	5 cut(s)	122, 143, 270, 272, 381
AclWI	GGATC	2 cut(s)	631, 644
AcoI	YGGCCR	2 cut(s)	3, 123
AfaI	GTAC	2 cut(s)	119, 173
AgsI	TTSAA	3 cut(s)	464, 485, 664
Alw26I	GTCTC	2 cut(s)	500, 614
AlwI	GGATC	2 cut(s)	631, 644
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	4 cut(s)	3, 37, 54, 123
ApeKI	GCWGC	7 cut(s)	218, 245, 260, 284, 287, 347, 365
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	636
BanI	GGYRCC	2 cut(s)	274, 520
BbvI	GCAGC	7 cut(s)	205, 232, 247, 271, 299, 359, 377
BceAI	ACGGC	2 cut(s)	110, 607
BciVI	GTATCC	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	500, 614
BfmI	CTRYAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	583
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	4 cut(s)	148, 276, 522, 638
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	518
BpmI	CTGGAG	2 cut(s)	234, 533
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	208, 270, 431
BsaWI	WCCGGW	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	522, 524
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	208, 270, 431
BseGI	GGATG	3 cut(s)	109, 427, 442
BseNI	ACTGG	2 cut(s)	522, 524
BseRI	GAGGAG	3 cut(s)	347, 368, 617
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	7 cut(s)	205, 232, 247, 271, 299, 359, 377
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	122, 272
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	5, 39, 56, 125
BshNI	GGYRCC	2 cut(s)	274, 520
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	36, 66, 84, 210
BslFI	GGGAC	2 cut(s)	31, 172
BsmAI	GTCTC	2 cut(s)	500, 614
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	2 cut(s)	31, 172
BsnI	GGCC	4 cut(s)	5, 39, 56, 125
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
BspACI	CCGC	5 cut(s)	122, 143, 270, 272, 381
BspANI	GGCC	4 cut(s)	5, 39, 56, 125
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	2 cut(s)	122, 272
BspLI	GGNNCC	4 cut(s)	148, 276, 522, 638
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	2 cut(s)	631, 644
BspT107I	GGYRCC	2 cut(s)	274, 520
BspTNI	GGTCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	522, 524
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	208, 270, 431
BssMI	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	3 cut(s)	320, 459, 503
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	37, 141, 195
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	109, 427, 442
BstFNI	CGCG	2 cut(s)	122, 272
BstKTI	GATC	6 cut(s)	22, 91, 313, 555, 577, 639
BstMAI	GTCTC	2 cut(s)	500, 614
BstMBI	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 260, 266, 269, 281
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	2 cut(s)	122, 272
BstV1I	GCAGC	7 cut(s)	205, 232, 247, 271, 299, 359, 377
BstX2I	RGATCY	2 cut(s)	19, 636
BstYI	RGATCY	2 cut(s)	19, 636
BstZI	CGGCCG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	4 cut(s)	5, 39, 56, 125
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	109, 427, 442
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	37, 141, 195
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	273
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	118, 172
CviAII	CATG	2 cut(s)	451, 556
CviQI	GTAC	2 cut(s)	118, 172
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	6 cut(s)	21, 90, 312, 554, 576, 638
DpnII	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
EaeI	YGGCCR	2 cut(s)	3, 123
EagI	CGGCCG	1 cut(s)	123
Eam1104I	CTCTTC	3 cut(s)	320, 459, 503
EarI	CTCTTC	3 cut(s)	320, 459, 503
EciI	GGCGGA	1 cut(s)	370
EclXI	CGGCCG	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	500
Eco52I	CGGCCG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	2 cut(s)	454, 559
FaiI	YATR	4 cut(s)	452, 534, 557, 673
FaqI	GGGAC	2 cut(s)	31, 172
FatI	CATG	2 cut(s)	450, 555
FauI	CCCGC	1 cut(s)	136
FokI	GGATG	3 cut(s)	116, 434, 449
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	234, 533
HaeIII	GGCC	4 cut(s)	5, 39, 56, 125
HapII	CCGG	4 cut(s)	36, 66, 84, 210
HgaI	GACGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	454, 559
HindIII	AAGCTT	2 cut(s)	202, 458
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	4 cut(s)	36, 66, 84, 210
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	4 cut(s)	84, 419, 550, 640
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	8 cut(s)	22, 94, 160, 274, 337, 387, 425, 670
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4V	TGCA	2 cut(s)	287, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 260, 266, 269, 281
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	454, 559
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
LmnI	GCTCC	5 cut(s)	253, 257, 268, 552, 604
Lsp1109I	GCAGC	7 cut(s)	205, 232, 247, 271, 299, 359, 377
LweI	GCATC	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	7, 647
MalI	GATC	6 cut(s)	21, 90, 312, 554, 576, 638
MboI	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
MboII	GAAGA	6 cut(s)	305, 307, 400, 466, 476, 490
MflI	RGATCY	2 cut(s)	19, 636
MmeI	TCCRAC	1 cut(s)	111
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	113, 485
MspA1I	CMGCKG	3 cut(s)	94, 143, 272
MspI	CCGG	4 cut(s)	36, 66, 84, 210
MspR9I	CCNGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	122, 272
MwoI	GCNNNNNNNGC	5 cut(s)	251, 260, 266, 269, 281
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	454, 559
NlaIV	GGNNCC	4 cut(s)	148, 276, 522, 638
NmuCI	GTSAC	2 cut(s)	7, 647
PaeR7I	CTCGAG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	148, 276, 522, 638
PspXI	VCTCGAGB	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	19, 636
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	119, 173
RsaNI	GTAC	2 cut(s)	118, 172
RseI	CAYNNNNRTG	2 cut(s)	113, 485
SacII	CCGCGG	1 cut(s)	273
Sau3AI	GATC	6 cut(s)	19, 88, 310, 552, 574, 636
ScrFI	CCNGG	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	113, 485
SmlI	CTYRAG	2 cut(s)	41, 50
SmoI	CTYRAG	2 cut(s)	41, 50
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	5 cut(s)	122, 143, 270, 272, 381
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	51, 570, 600
TauI	GCSGC	3 cut(s)	125, 272, 275
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	7, 647
TseI	GCWGC	7 cut(s)	218, 245, 260, 284, 287, 347, 365
Tsp45I	GTSAC	2 cut(s)	7, 647
TspDTI	ATGAA	3 cut(s)	339, 456, 467
TspRI	CASTG	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.