AT5G19680

leucine-rich repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011350
Physical Location & Seq
Forward (+)
6649574 .. 6652046
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19680.1

Sequence Viewer

Length: 987 bp
ATGAACAGTGAGAAGGAAGACGAGCCATTGGAAGAGATCGGCGATTCGAATAATGTTCTCGATCTCACTAGCTATCAGCTCCACAGTCTCGATACGGTCGAGTTACCGCCGAACCTGATTGAGCTGGACCTTACGGCGAACCGTTTGTCGGGATTGGACTCGAGGATCGCTCAGCTCTCCACGCTTAAGAAGCTTTCTCTCCGCCAAAACCTAATTGATGATTCCGCCGTCGAACCGTTGTCTCACTGGGACGCCTTGTCCGATCTCGAGGAGTTAGTTCTCAGAGATAACAAGCTAGCGAAAGTACCAGATGTCAGCATATTCACGAAGCTTTTGGTTTACGACATATCTTTCAATGAAATCACTTCTTTGGAAGGAATATCCAAGGCCTCTAGCACACTGAAGGAACTCTATGTGTCTAAAAATGAAGTTAACAAGATTATGGAGATTGAACACTTACACAACTTGCAGATTCTTGAACTGGGGTCTAATAGATTGCGGGTGATGGAAAATCTGGAAAACTTCACAAAATTAGAAGAACTATGGCTCGGAAGAAACCGTATCAAAGTTGTTAACCTGTGTGGGCTCAAATGCATAAAAAAGATTAGCTTGCAGAGCAATCGATTGACCTCTATGAAAGGATTTGAGGAATGTGTTGCTCTTGAAGAGTTATATTTGAGCCATAATGGTATCTCCAAAATGGAAGGCTTGAGTGCATTGGTCAACCTACGGGTATTGGACGTGTCGAACAACAAGCTTACTTCAGTTGATGACATTCAGAACCTCACAAAGTTGGAAGATTTGTGGCTTAATGACAACCAGATAGAATCACTGGAAGCAATCACAGAAGCTGTTACAGGATCTAAAGAGAAGCTTACCACTATCTACCTCGAAAATAACCCTTGTGCCAAGTCTTCTGATTATGTTGCTGCGGTCAGACAAATCTTCCCGAATGTGGAGCAAATTGATTCTAACTTATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

328

Amino Acids

36.98

Weight (kDa)

4.71

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 221 - 275 2e-06 Leucine rich repeat
LRR_9 PF14580 225 - 321 1.9e-06 Leucine-rich repeat
LRR_4 PF12799 242 - 281 3.4e-10 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 107, 202, 225, 499, 932
AclWI GGATC 2 cut(s) 173, 868
AcuI CTGAAG 2 cut(s) 422, 747
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 148, 955
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 4 cut(s) 355, 452, 479, 665
AhdI GACNNNNNGTC 1 cut(s) 256
AjiI CACGTC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 92, 246
AlwI GGATC 2 cut(s) 173, 868
AlwNI CAGNNNCTG 1 cut(s) 851
Ama87I CYCGRG 2 cut(s) 160, 266
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 929
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 514
AsuII TTCGAA 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 295
AvaI CYCGRG 2 cut(s) 160, 266
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 588
BbsI GAAGAC 2 cut(s) 24, 906
BbvI GCAGC 1 cut(s) 916
BccI CCATC 1 cut(s) 499
BceAI ACGGC 2 cut(s) 150, 212
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BcoDI GTCTC 2 cut(s) 92, 246
BfaI CTAG 3 cut(s) 69, 296, 393
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 930
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 931
Bme18I GGWCC 1 cut(s) 127
BmeRI GACNNNNNGTC 1 cut(s) 256
BmeT110I CYCGRG 2 cut(s) 160, 266
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 127
BmrI ACTGGG 2 cut(s) 256, 491
BmtI GCTAGC 1 cut(s) 299
BmuI ACTGGG 2 cut(s) 256, 491
BpiI GAAGAC 2 cut(s) 24, 906
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bpu1102I GCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 730
Bsa29I ATCGAT 1 cut(s) 622
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 955
Bse1I ACTGG 3 cut(s) 251, 486, 837
BseCI ATCGAT 1 cut(s) 622
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 148, 955
BseMII CTCAG 2 cut(s) 185, 295
BseNI ACTGG 3 cut(s) 251, 486, 837
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 916
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 622
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 160, 266
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 148, 955
BsmAI GTCTC 2 cut(s) 92, 246
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 2 cut(s) 160, 266
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 5 cut(s) 36, 61, 165, 262, 860
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 5 cut(s) 107, 202, 225, 499, 932
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 2 cut(s) 184, 294
BspDI ATCGAT 1 cut(s) 622
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 173, 868
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 3 cut(s) 251, 486, 837
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 5 cut(s) 36, 61, 165, 262, 860
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 384
Bst4CI ACNGT 6 cut(s) 8, 86, 97, 143, 237, 560
Bst6I CTCTTC 2 cut(s) 27, 660
BstACI GRCGYC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 297, 611
BstDEI CTNAG 3 cut(s) 171, 281, 984
BstKTI GATC 5 cut(s) 39, 64, 168, 265, 863
BstMAI GTCTC 2 cut(s) 92, 246
BstMBI GATC 5 cut(s) 36, 61, 165, 262, 860
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 3 cut(s) 181, 190, 615
BstV1I GCAGC 1 cut(s) 916
BstV2I GAAGAC 2 cut(s) 24, 906
BstX2I RGATCY 1 cut(s) 860
BstYI RGATCY 1 cut(s) 860
Bsu15I ATCGAT 1 cut(s) 622
BsuRI GGCC 1 cut(s) 389
BsuTUI ATCGAT 1 cut(s) 622
BtrI CACGTC 1 cut(s) 742
BtsIMutI CAGTG 4 cut(s) 13, 244, 398, 830
Cac8I GCNNGC 2 cut(s) 297, 611
CaiI CAGNNNCTG 1 cut(s) 851
Cfr13I GGNCC 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 622
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 305
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 171, 281, 984
DpnI GATC 5 cut(s) 38, 63, 167, 264, 862
DpnII GATC 5 cut(s) 36, 61, 165, 262, 860
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 27, 660
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 2 cut(s) 27, 660
EciI GGCGGA 2 cut(s) 191, 214
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 422, 747
Eco88I CYCGRG 2 cut(s) 160, 266
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 596
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 384
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 858, 890
FaqI GGGAC 1 cut(s) 263
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 930
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 1 cut(s) 930
FspBI CTAG 3 cut(s) 69, 296, 393
GluI GCNGC 1 cut(s) 930
HaeIII GGCC 1 cut(s) 389
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 252
HincII GTYRAC 3 cut(s) 433, 574, 724
HindII GTYRAC 3 cut(s) 433, 574, 724
HindIII AAGCTT 4 cut(s) 191, 329, 755, 872
HinfI GANTC 6 cut(s) 44, 158, 221, 472, 827, 968
HpaI GTTAAC 2 cut(s) 433, 574
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 4 cut(s) 340, 433, 574, 724
Hpy188I TCNGA 6 cut(s) 262, 284, 551, 780, 919, 938
Hpy188III TCNNGA 9 cut(s) 59, 89, 150, 266, 325, 476, 515, 662, 949
Hpy8I GTNNAC 4 cut(s) 340, 433, 574, 724
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 7, 368, 397, 698
HpyCH4III ACNGT 6 cut(s) 8, 86, 97, 143, 237, 560
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 4 cut(s) 469, 594, 613, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 190, 615
HpyF3I CTNAG 3 cut(s) 171, 281, 984
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 252
KspAI GTTAAC 2 cut(s) 433, 574
Kzo9I GATC 5 cut(s) 36, 61, 165, 262, 860
LmnI GCTCC 2 cut(s) 84, 958
Lsp1109I GCAGC 1 cut(s) 916
MaeI CTAG 3 cut(s) 69, 296, 393
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 2 cut(s) 102, 853
MalI GATC 5 cut(s) 38, 63, 167, 264, 862
MboI GATC 5 cut(s) 36, 61, 165, 262, 860
MboII GAAGA 8 cut(s) 29, 44, 548, 564, 677, 809, 906, 937
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 3 cut(s) 213, 530, 963
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 7 cut(s) 156, 262, 400, 640, 640, 794, 899
Mph1103I ATGCAT 1 cut(s) 596
MseI TTAA 4 cut(s) 186, 432, 573, 810
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 181, 190, 615
NdeII GATC 5 cut(s) 36, 61, 165, 262, 860
NheI GCTAGC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 596
NspV TTCGAA 1 cut(s) 47
PaeR7I CTCGAG 2 cut(s) 160, 266
PceI AGGCCT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 258
PfeI GAWTC 5 cut(s) 44, 221, 472, 827, 968
PkrI GCNGC 1 cut(s) 931
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 127
PspXI VCTCGAGB 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 860
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 4 cut(s) 186, 432, 573, 810
SatI GCNGC 1 cut(s) 930
Sau3AI GATC 5 cut(s) 36, 61, 165, 262, 860
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 588
Sfr274I CTCGAG 2 cut(s) 160, 266
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 2 cut(s) 160, 266
SmlI CTYRAG 4 cut(s) 160, 185, 266, 709
SmoI CTYRAG 4 cut(s) 160, 185, 266, 709
Sse9I AATT 3 cut(s) 213, 530, 963
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 5 cut(s) 107, 202, 225, 499, 932
SspMI CTAG 3 cut(s) 69, 296, 393
StuI AGGCCT 1 cut(s) 389
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 6 cut(s) 8, 86, 97, 143, 237, 560
TaiI ACGT 1 cut(s) 744
TasI AATT 3 cut(s) 213, 530, 963
TfiI GAWTC 5 cut(s) 44, 221, 472, 827, 968
Tru1I TTAA 4 cut(s) 186, 432, 573, 810
Tru9I TTAA 4 cut(s) 186, 432, 573, 810
TscAI CASTG 4 cut(s) 13, 251, 405, 837
TseI GCWGC 1 cut(s) 929
TspDTI ATGAA 4 cut(s) 17, 372, 441, 650
TspRI CASTG 4 cut(s) 13, 251, 405, 837
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 127
XhoI CTCGAG 2 cut(s) 160, 266
XspI CTAG 3 cut(s) 69, 296, 393
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.