Rorug02G0018600

Protein phosphatase 1 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011350
Physical Location & Seq
Forward (+)
1543689 .. 1544789
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0018600.1

Sequence Viewer

Length: 774 bp
ATGGGAATTCAGAAGCCTGCATGGTTGGAAGCCCTCTATACTCAGAAGTTCTTTGCAGCTTGCTCCTTTCATGAAACTGCAAAGAAGAACGAAAAGAACGTTTACTGTTTGGATTGTTGCACCAGTATATGCCCCCATTGTCTACCTTCCCACCGTTTCCATAGGCTCCTTCAAATTCGTCGCTATGTTTACCATGATGTTGTAAGATTGGAAGATCTTCAAAAGCTCGTCGACTGCAATAATGTTCAGTCATATACCATAAATAATGCCAAAGTGGTGTTCATCAAGAAGAGACCTCAGAATAGGCAATTCAAGGGTTCAGGAAACTATTGCACTTCTTGTGACAGAAGTCTTCAAGAACCTTATATCCATTGCTCTCTTGGGTGCAAGGTGGATTATGTGGTTACATTGAAGAGGGGGCTCTCTCCTTACCTGAGGAAATGTGAATCACTCCAACTGAGTCCAGACTTCTTAGTTCCTCTCCAGTCCGAGTCTGATGATCAGGACATGACCAGTGATCAGACTCTCCATTCCACAATTGTGGACTGCGATGATCCAATGAGCTATTCGTCATCATCAGGCTCCGAAAACATGAGCATGAGCATGGCATACACAAATCGTGATCAGATTGTCCGAAAGAAGAGAAGCGGACTCAATTACAGTTACGTGTACTGCTCAAGATCAGCTCATAAAGTTTCCGACGATGATCAAGACATGTCCTCAAACATGATCAGTAGAAGAAAAAGCATTCCTCATAGATCTCCTCTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

257

Amino Acids

29.58

Weight (kDa)

8.66

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 131 7.1e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 142, 231
AciI CCGC 1 cut(s) 648
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 2 cut(s) 6, 174
AfaI GTAC 1 cut(s) 671
AflIII ACRYGT 2 cut(s) 666, 714
AgsI TTSAA 5 cut(s) 173, 221, 313, 356, 412
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 550, 582
AleI CACNNNNGTG 1 cut(s) 539
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 4 cut(s) 59, 226, 564, 686
AluI AGCT 4 cut(s) 59, 226, 564, 686
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 6, 174
Asp700I GAANNNNTTC 1 cut(s) 216
AxyI CCTNAGG 1 cut(s) 434
BanII GRGCYC 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 68
BclI TGATCA 5 cut(s) 499, 517, 622, 706, 729
BcoDI GTCTC 1 cut(s) 286
BglII AGATCT 2 cut(s) 214, 758
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 167, 583
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 286
Bse1I ACTGG 3 cut(s) 123, 484, 513
Bse21I CCTNAGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 4 cut(s) 56, 311, 425, 449
BseNI ACTGG 3 cut(s) 123, 484, 513
BseRI GAGGAG 1 cut(s) 753
BseXI GCAGC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 747
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
BspACI CCGC 1 cut(s) 648
BspCNI CTCAG 4 cut(s) 55, 310, 426, 450
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 167, 583
BspPI GGATC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 3 cut(s) 123, 484, 513
BssMI GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
Bst4CI ACNGT 3 cut(s) 107, 155, 662
Bst6I CTCTTC 3 cut(s) 284, 407, 635
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 18, 61
BstDEI CTNAG 5 cut(s) 42, 297, 434, 458, 472
BstKTI GATC 9 cut(s) 217, 502, 520, 556, 625, 683, 709, 732, 761
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
BstNSI RCATGY 1 cut(s) 718
BstPAI GACNNNNGTC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 214, 758
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 214, 758
Bsu36I CCTNAGG 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 18, 61
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 1 cut(s) 670
CviAII CATG 9 cut(s) 21, 71, 194, 508, 592, 598, 604, 715, 727
CviJI RGCY 9 cut(s) 16, 32, 59, 166, 226, 421, 564, 582, 686
CviKI_1 RGCY 9 cut(s) 16, 32, 59, 166, 226, 421, 564, 582, 686
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 5 cut(s) 42, 297, 434, 458, 472
DpnI GATC 9 cut(s) 216, 501, 519, 555, 624, 682, 708, 731, 760
DpnII GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
Eam1104I CTCTTC 3 cut(s) 284, 407, 635
EarI CTCTTC 3 cut(s) 284, 407, 635
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 9 cut(s) 24, 74, 197, 511, 595, 601, 607, 718, 730
FatI CATG 9 cut(s) 20, 70, 193, 507, 591, 597, 603, 714, 726
FbaI TGATCA 5 cut(s) 499, 517, 622, 706, 729
FblI GTMKAC 2 cut(s) 142, 231
Fnu4HI GCNGC 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 467
Hin1II CATG 9 cut(s) 24, 74, 197, 511, 595, 601, 607, 718, 730
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 446, 460, 491, 523, 651
Hpy166II GTNNAC 6 cut(s) 103, 143, 190, 232, 544, 670
Hpy188III TCNNGA 9 cut(s) 71, 286, 321, 356, 464, 503, 620, 678, 710
Hpy8I GTNNAC 6 cut(s) 103, 143, 190, 232, 544, 670
Hpy99I CGWCG 3 cut(s) 183, 233, 704
HpyAV CCTTC 2 cut(s) 156, 179
HpyCH4III ACNGT 3 cut(s) 107, 155, 662
HpyCH4IV ACGT 2 cut(s) 99, 666
HpyCH4V TGCA 7 cut(s) 20, 56, 80, 120, 237, 333, 387
HpyF3I CTNAG 5 cut(s) 42, 297, 434, 458, 472
HpySE526I ACGT 2 cut(s) 99, 666
Hsp92II CATG 9 cut(s) 24, 74, 197, 511, 595, 601, 607, 718, 730
Ksp22I TGATCA 5 cut(s) 499, 517, 622, 706, 729
Kzo9I GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
LmnI GCTCC 3 cut(s) 68, 171, 587
LpnPI CCDG 9 cut(s) 30, 136, 306, 446, 477, 488, 497, 526, 564
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 2 cut(s) 99, 666
MaeIII GTNAC 3 cut(s) 341, 403, 662
MalI GATC 9 cut(s) 216, 501, 519, 555, 624, 682, 708, 731, 760
MboI GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
MboII GAAGA 8 cut(s) 97, 209, 224, 301, 344, 424, 652, 750
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 214, 758
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 5 cut(s) 6, 174, 308, 537, 655
MlyI GAGTC 4 cut(s) 469, 500, 517, 645
MmeI TCCRAC 3 cut(s) 6, 478, 723
MnlI CCTC 8 cut(s) 44, 306, 408, 429, 489, 730, 762, 774
MroXI GAANNNNTTC 1 cut(s) 216
MslI CAYNNNNRTG 3 cut(s) 539, 596, 602
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 747
NdeII GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
NlaIII CATG 9 cut(s) 24, 74, 197, 511, 595, 601, 607, 718, 730
NlaIV GGNNCC 2 cut(s) 167, 583
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 718
OliI CACNNNNGTG 1 cut(s) 539
PagI TCATGA 1 cut(s) 70
PciI ACATGT 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 4 cut(s) 468, 499, 517, 645
PpsI GAGTC 4 cut(s) 468, 499, 517, 645
Ppu21I YACGTR 1 cut(s) 667
PscI ACATGT 1 cut(s) 714
PshAI GACNNNNGTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 167, 583
PsuI RGATCY 2 cut(s) 214, 758
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 3 cut(s) 539, 596, 602
SalI GTCGAC 1 cut(s) 230
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 9 cut(s) 214, 499, 517, 553, 622, 680, 706, 729, 758
SchI GAGTC 4 cut(s) 469, 500, 517, 645
SduI GDGCHC 1 cut(s) 423
SmiMI CAYNNNNRTG 3 cut(s) 539, 596, 602
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
Sse9I AATT 5 cut(s) 6, 174, 308, 537, 655
SsiI CCGC 1 cut(s) 648
TaaI ACNGT 3 cut(s) 107, 155, 662
TaiI ACGT 2 cut(s) 102, 669
TaqI TCGA 1 cut(s) 231
TasI AATT 5 cut(s) 6, 174, 308, 537, 655
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 1 cut(s) 446
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 59, 87, 271
TspRI CASTG 1 cut(s) 520
XapI RAATTY 2 cut(s) 6, 174
XceI RCATGY 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 142, 231
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.