Prupe.7G222100_v2.0.a1

Protein phosphatase 1 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011350
Physical Location & Seq
Forward (+)
19824948 .. 19827511
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G222100.1

Sequence Viewer

Length: 1020 bp
ATGGACGACCAGACCGGAGCACCGCCACCGGCTCCGAATTCGGAAGGCTACGATGATCCGACAATGGAGGACGATCCTTCCTCGACGGTCCTCGATCTCACCAGCTTCCAACTCCACGATCTGGAGTCGATCGAGTTACCACCGACTCTAACCGAGTTAGACGTGACGGCGAACCGCCTCACCAGCTTGGACACTCGGATTGCAACCCTCTCGAGCCTTAAGAAACTCTCACTCCGCCAAAACCTCATTGAAGACGCCGCCGTTGAGCCGATCTCTCGTTGGGACGCTCTGTCCGGTATCGAGGAGTTGGTGCTGAGGGATAATAAGCTAACGAAAATACCCGATGTTACCATATTCATCAAGCTTTTGGTTTTCGATGTTTCTTTCAACGAGATTACGTCGTTACATGGATTGTCCAAGGTCTCCAGCAAGCTCAAGGAGCTCTATGTTTCCAAAAATGAAGTTGCCAAGATTGAAGAGATTGACCACCTCCATGAGCTTCTAATTCTTGAGCTTGGTTCCAACAGATTACGGGTGATGGAGAATTTGCAGAACATGACACATTTACAAGAGCTGTGGCTTGGGCGGAATCGAATTAAGGTAGTGAATTTGTGTGGGCTGAAATGCATCAAGAAGATTAGCTTACAAAGCAATCGCTTAACTTCTATGACTGGATTCGAGGAGTGTGTTGCTCTAGAGGAATTGTACTTGAGCCATAATGGTATTTCAAAAATGGAAGGCCTCTCAACCTTAGTCAACCTACATATCTTGGATGTATCAAACAATAAGCTAACGTCAGTGAATGGCATTGAAAACCTAACAATGTTAGAAGACCTGTGGCTTAATGACAACAGCATAGACTCAGTTGAAGGCATTGCTGAGGTTGTTGCTGGTTCAAGAGAGAAGCTCACTACCATTTATCTCGAGAATAATCCATGTGCGAAATCTCCAAACTATGCTGCTGCCTTGAGACAAATCTTCCCAAATATACAGCAAATTGATTGTCATATATTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

340

Amino Acids

37.87

Weight (kDa)

4.79

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 5 cut(s) 23, 175, 235, 258, 586
AclWI GGATC 2 cut(s) 50, 68
AcsI RAATTY 3 cut(s) 37, 544, 607
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 7 cut(s) 251, 388, 476, 729, 812, 869, 897
AhdI GACNNNNNGTC 1 cut(s) 289
AjiI CACGTC 1 cut(s) 163
Alw21I GWGCWC 2 cut(s) 22, 444
Alw26I GTCTC 2 cut(s) 427, 964
AlwI GGATC 2 cut(s) 50, 68
Ama87I CYCGRG 2 cut(s) 211, 923
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 2 cut(s) 959, 962
ApoI RAATTY 3 cut(s) 37, 544, 607
ArsI GACNNNNNNTTYG 2 cut(s) 988, 1020
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 91, 172, 547
AvaI CYCGRG 2 cut(s) 211, 923
AvaII GGWCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 258, 837
Bbv12I GWGCWC 2 cut(s) 22, 444
BbvCI CCTCAGC 2 cut(s) 314, 879
BbvI GCAGC 2 cut(s) 946, 949
BccI CCATC 1 cut(s) 532
BceAI ACGGC 2 cut(s) 183, 245
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BcoDI GTCTC 2 cut(s) 427, 964
BfaI CTAG 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 218
BisI GCNGC 3 cut(s) 258, 960, 963
BlsI GCNGC 3 cut(s) 259, 961, 964
Bme18I GGWCC 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 289
BmeT110I CYCGRG 2 cut(s) 211, 923
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 33, 520
BmsI GCATC 1 cut(s) 636
BpiI GAAGAC 2 cut(s) 258, 837
BplI GAGNNNNNCTC 4 cut(s) 257, 289, 891, 923
BpmI CTGGAG 2 cut(s) 143, 409
Bpu10I CCTNAGC 2 cut(s) 314, 879
BpuEI CTTGAG 4 cut(s) 419, 530, 730, 988
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 2 cut(s) 14, 293
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 1 cut(s) 873
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 3 cut(s) 305, 870, 876
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 2 cut(s) 317, 695
BseXI GCAGC 2 cut(s) 946, 949
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 741
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 22, 444
BsiHKCI CYCGRG 2 cut(s) 211, 923
BsiSI CCGG 3 cut(s) 15, 29, 294
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 427, 964
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 741
Bso31I GGTCTC 1 cut(s) 427
BsoBI CYCGRG 2 cut(s) 211, 923
Bsp1286I GDGCHC 2 cut(s) 22, 444
Bsp143I GATC 6 cut(s) 55, 73, 94, 118, 129, 270
BspACI CCGC 5 cut(s) 23, 175, 235, 258, 586
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 3 cut(s) 306, 871, 875
BspLI GGNNCC 2 cut(s) 33, 520
BspPI GGATC 2 cut(s) 50, 68
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 676
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 6 cut(s) 55, 73, 94, 118, 129, 270
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 255
BstAFI CTTAAG 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 4 cut(s) 314, 751, 862, 879
BstF5I GGATG 1 cut(s) 778
BstKTI GATC 6 cut(s) 58, 76, 97, 121, 132, 273
BstMAI GTCTC 2 cut(s) 427, 964
BstMBI GATC 6 cut(s) 55, 73, 94, 118, 129, 270
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 183, 439, 648
BstV1I GCAGC 2 cut(s) 946, 949
BstV2I GAAGAC 2 cut(s) 258, 837
BsuRI GGCC 1 cut(s) 741
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 778
BtsIMutI CAGTG 1 cut(s) 804
Cac8I GCNNGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 2 cut(s) 263, 293
Csp6I GTAC 1 cut(s) 706
CspCI CAANNNNNGTGG 2 cut(s) 557, 592
CviAII CATG 4 cut(s) 407, 494, 556, 936
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 4 cut(s) 314, 751, 862, 879
DpnI GATC 6 cut(s) 57, 75, 96, 120, 131, 272
DpnII GATC 6 cut(s) 55, 73, 94, 118, 129, 270
DriI GACNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 471
Eam1105I GACNNNNNGTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 2 cut(s) 224, 601
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 741
Eco24I GRGCYC 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 442
Eco88I CYCGRG 2 cut(s) 211, 923
EcoICRI GAGCTC 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 4 cut(s) 410, 497, 559, 939
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 406, 493, 555, 935
Fnu4HI GCNGC 3 cut(s) 258, 960, 963
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 3 cut(s) 258, 960, 963
FspBI CTAG 1 cut(s) 695
GluI GCNGC 3 cut(s) 258, 960, 963
GsuI CTGGAG 2 cut(s) 143, 409
HaeIII GGCC 1 cut(s) 741
HapII CCGG 3 cut(s) 15, 29, 294
HgaI GACGC 2 cut(s) 263, 293
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 4 cut(s) 410, 497, 559, 939
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 5 cut(s) 125, 145, 589, 675, 860
HpaII CCGG 3 cut(s) 15, 29, 294
HphI GGTGA 3 cut(s) 91, 172, 547
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 4 cut(s) 36, 43, 60, 198
Hpy188III TCNNGA 8 cut(s) 122, 211, 509, 631, 695, 897, 923, 925
Hpy8I GTNNAC 1 cut(s) 757
Hpy99I CGWCG 2 cut(s) 88, 403
HpyAV CCTTC 4 cut(s) 38, 87, 731, 863
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 3 cut(s) 162, 398, 794
HpyCH4V TGCA 3 cut(s) 203, 550, 627
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 439, 648
HpyF3I CTNAG 4 cut(s) 314, 751, 862, 879
HpySE526I ACGT 3 cut(s) 162, 398, 794
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 4 cut(s) 410, 497, 559, 939
Kzo9I GATC 6 cut(s) 55, 73, 94, 118, 129, 270
LmnI GCTCC 3 cut(s) 17, 37, 439
Lsp1109I GCAGC 2 cut(s) 946, 949
LweI GCATC 1 cut(s) 636
MaeI CTAG 1 cut(s) 695
MaeII ACGT 3 cut(s) 162, 398, 794
MaeIII GTNAC 4 cut(s) 135, 163, 346, 402
MalI GATC 6 cut(s) 57, 75, 96, 120, 131, 272
MboI GATC 6 cut(s) 55, 73, 94, 118, 129, 270
MboII GAAGA 5 cut(s) 263, 488, 646, 842, 970
MhlI GDGCHC 2 cut(s) 22, 444
MluCI AATT 7 cut(s) 37, 504, 544, 594, 607, 701, 996
MlyI GAGTC 3 cut(s) 134, 139, 854
MmeI TCCRAC 3 cut(s) 83, 133, 546
Mph1103I ATGCAT 1 cut(s) 629
MseI TTAA 5 cut(s) 219, 597, 659, 843, 1018
MslI CAYNNNNRTG 1 cut(s) 492
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 3 cut(s) 15, 29, 294
MwoI GCNNNNNNNGC 3 cut(s) 183, 439, 648
NdeII GATC 6 cut(s) 55, 73, 94, 118, 129, 270
NlaIII CATG 4 cut(s) 410, 497, 559, 939
NlaIV GGNNCC 2 cut(s) 33, 520
NmuCI GTSAC 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 629
PaeR7I CTCGAG 2 cut(s) 211, 923
PceI AGGCCT 1 cut(s) 741
PfeI GAWTC 2 cut(s) 589, 675
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 3 cut(s) 259, 961, 964
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 3 cut(s) 133, 139, 854
PpsI GAGTC 3 cut(s) 133, 139, 854
Psp124BI GAGCTC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 33, 520
PspPI GGNCC 1 cut(s) 88
PvuI CGATCG 1 cut(s) 132
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 444
SaqAI TTAA 5 cut(s) 219, 597, 659, 843, 1018
SatI GCNGC 3 cut(s) 258, 960, 963
Sau3AI GATC 6 cut(s) 55, 73, 94, 118, 129, 270
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 3 cut(s) 134, 139, 854
SduI GDGCHC 2 cut(s) 22, 444
SfaNI GCATC 1 cut(s) 636
Sfr274I CTCGAG 2 cut(s) 211, 923
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 2 cut(s) 211, 923
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 7 cut(s) 211, 218, 434, 509, 709, 923, 967
SmoI CTYRAG 7 cut(s) 211, 218, 434, 509, 709, 923, 967
Sse9I AATT 7 cut(s) 37, 504, 544, 594, 607, 701, 996
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 5 cut(s) 23, 175, 235, 258, 586
SspMI CTAG 1 cut(s) 695
SstI GAGCTC 1 cut(s) 444
StuI AGGCCT 1 cut(s) 741
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 3 cut(s) 165, 401, 797
TasI AATT 7 cut(s) 37, 504, 544, 594, 607, 701, 996
TatI WGTACW 1 cut(s) 705
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 589, 675
Tru1I TTAA 5 cut(s) 219, 597, 659, 843, 1018
Tru9I TTAA 5 cut(s) 219, 597, 659, 843, 1018
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 959, 962
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 346, 474
TspRI CASTG 1 cut(s) 804
Van91I CCANNNNNTGG 1 cut(s) 121
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 3 cut(s) 37, 544, 607
XbaI TCTAGA 1 cut(s) 694
XhoI CTCGAG 2 cut(s) 211, 923
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.