FvH4_1g05880

Protein phosphatase 1 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011350
Physical Location & Seq
Reverse (-)
3123624 .. 3126100
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05880.t2

Sequence Viewer

Length: 1011 bp
ATGGACGACGAGGCCAAACCGCCACCACCGAATCACGACGATCCGATGACCGAGGACGACGGCGACTCATCCGCCACCGTCCTCGATCTCACCAGCTGCCAACTCCACGACCTCAACTCGGTCGAGCTACCGCCGAGTCTCACCGAGCTAGACCTCACCGCCAACCGCCTCTCCTCCTTGGACACTCGCATTGCCGCCCTCTCCAACCTCACCAAGCTCTCCTTCCGCCAGAACCTCTTCGAAGACTCCGCCGTCGAGCCGATCTCCGCCTGGACCGCGCTCTCAGGCCTCGAGGAATTGGTGCTCAGAGATAATAAGCTGAGGAAGATTCCGGATGCGAGTATCTTCAAGAAGCTTCTGGTTTTCGACGTCTCGTTTAATGAGATTACATCGCTGCAGGGCATGTCCAAGGTCTCCGGCGGCCTCAAGGAGCTTTACGTGTCGAAAAATGAAGTTACGAAGATCGAGGAAATCGATCATCTCCATGAGCTTCAGATTCTCGAGCTCGGTTCGAATCGGCTGAGGGTGATGCAGAGTCTGGAGAATATGACAAAGTTGCAAGAGCTATGGCTTGGACGGAATCGTATCAAGGTTGTTAATTTATGTGGGCTGAAATGTATTAAGAAGATTAGCTTGCAAAGCAATCGGTTAACTTCCATGACTGGATTTGAGGGTTGTGTTGCACTGGAGGAACTGTACTTGAGCCATAATGGTATTTCCAAAATGGAGGGCCTCTCAACGTTGGTTAACCTGCGCGTCTTGGATGTATCTAATAACAAGATAACATCAGTGAATGATATCAAAAACCTGACAATGTTAGAAGATCTGTGGCTTAATGACAACCAGATAGAGTCAATTGAAGGCATGGCTGAGGCTGTTATTGGCTCAAGAGAGAAGCTGGCTACTATATATCTCGAAAAAAATCCATGTGCAAAATCTCCAAACTATGCTGCTGCATTGAGACAAACCTTCCCGAACATACAGCAGATTGATTCTCATATATTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

337

Amino Acids

37.48

Weight (kDa)

4.97

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 229 - 269 5.2e-10 Leucine Rich repeats (2 copies)
LRR_4 PF12799 250 - 288 3e-08 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 372
AbsI CCTCGAGG 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 759
AccII CGCG 2 cut(s) 278, 756
AccIII TCCGGA 1 cut(s) 331
AclI AACGTT 1 cut(s) 740
AclWI GGATC 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 1 cut(s) 698
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 2 cut(s) 349, 860
AjnI CCWGG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
Alw21I GWGCWC 2 cut(s) 306, 507
Alw26I GTCTC 4 cut(s) 143, 376, 418, 955
AlwI GGATC 1 cut(s) 35
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 2 cut(s) 290, 500
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 4 cut(s) 12, 286, 421, 730
ApeKI GCWGC 4 cut(s) 96, 394, 950, 953
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 2 cut(s) 280, 756
AspS9I GGNCC 2 cut(s) 273, 730
AsuHPI GGTGA 5 cut(s) 82, 133, 148, 202, 538
AsuII TTCGAA 2 cut(s) 240, 512
AvaI CYCGRG 2 cut(s) 290, 500
AvaII GGWCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 2 cut(s) 306, 507
BbvCI CCTCAGC 3 cut(s) 320, 521, 870
BbvI GCAGC 4 cut(s) 83, 381, 937, 940
BceAI ACGGC 2 cut(s) 76, 236
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 1 cut(s) 271
BcoDI GTCTC 4 cut(s) 143, 376, 418, 955
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 759
BglII AGATCT 1 cut(s) 823
BisI GCNGC 6 cut(s) 97, 195, 395, 421, 951, 954
BlsI GCNGC 6 cut(s) 98, 196, 396, 422, 952, 955
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 2 cut(s) 290, 500
BmgT120I GGNCC 2 cut(s) 273, 730
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 2 cut(s) 325, 519
BpiI GAAGAC 1 cut(s) 249
BplI GAGNNNNNCTC 4 cut(s) 248, 280, 719, 751
BpmI CTGGAG 2 cut(s) 560, 707
Bpu10I CCTNAGC 3 cut(s) 320, 521, 870
Bpu14I TTCGAA 2 cut(s) 240, 512
BpuEI CTTGAG 3 cut(s) 410, 721, 871
Bsa29I ATCGAT 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 439
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 51, 177, 408
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 680, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 667, 690
Bse3DI GCAATG 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 474
BseDI CCNNGG 3 cut(s) 51, 177, 408
BseGI GGATG 3 cut(s) 68, 340, 769
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 5 cut(s) 297, 311, 319, 512, 861
BseNI ACTGG 2 cut(s) 667, 690
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 4 cut(s) 83, 381, 937, 940
Bsh1236I CGCG 2 cut(s) 278, 756
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 4 cut(s) 14, 288, 423, 732
BshVI ATCGAT 1 cut(s) 474
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 306, 507
BsiHKCI CYCGRG 2 cut(s) 290, 500
BsiSI CCGG 2 cut(s) 332, 417
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 4 cut(s) 143, 376, 418, 955
BsmBI CGTCTC 1 cut(s) 376
BsnI GGCC 4 cut(s) 14, 288, 423, 732
Bso31I GGTCTC 1 cut(s) 418
BsoBI CYCGRG 2 cut(s) 290, 500
Bsp119I TTCGAA 2 cut(s) 240, 512
Bsp1286I GDGCHC 2 cut(s) 306, 507
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 6 cut(s) 40, 85, 261, 462, 475, 823
BspANI GGCC 4 cut(s) 14, 288, 423, 732
BspCNI CTCAG 5 cut(s) 296, 312, 318, 513, 862
BspDI ATCGAT 1 cut(s) 474
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 2 cut(s) 278, 756
BspMAI CTGCAG 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 759
BspPI GGATC 1 cut(s) 35
BspT104I TTCGAA 2 cut(s) 240, 512
BspTNI GGTCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 2 cut(s) 667, 690
BssECI CCNNGG 3 cut(s) 51, 177, 408
BssMI GATC 6 cut(s) 40, 85, 261, 462, 475, 823
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 177, 408
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 79, 696
Bst6I CTCTTC 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 439
BstBI TTCGAA 2 cut(s) 240, 512
BstC8I GCNNGC 2 cut(s) 635, 900
BstDEI CTNAG 5 cut(s) 283, 305, 320, 521, 870
BstF5I GGATG 3 cut(s) 68, 340, 769
BstFNI CGCG 2 cut(s) 278, 756
BstHHI GCGC 2 cut(s) 280, 756
BstKTI GATC 6 cut(s) 43, 88, 264, 465, 478, 826
BstMAI GTCTC 4 cut(s) 143, 376, 418, 955
BstMBI GATC 6 cut(s) 40, 85, 261, 462, 475, 823
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 275, 639
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 395
BstUI CGCG 2 cut(s) 278, 756
BstV1I GCAGC 4 cut(s) 83, 381, 937, 940
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 474
BsuRI GGCC 4 cut(s) 14, 288, 423, 732
BsuTUI ATCGAT 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 3 cut(s) 68, 340, 769
BtsIMutI CAGTG 2 cut(s) 683, 795
BveI ACCTGC 1 cut(s) 759
Cac8I GCNNGC 2 cut(s) 635, 900
CaiI CAGNNNCTG 1 cut(s) 538
CfoI GCGC 2 cut(s) 280, 756
Cfr13I GGNCC 2 cut(s) 273, 730
ClaI ATCGAT 1 cut(s) 474
CseI GACGC 1 cut(s) 745
Csp6I GTAC 1 cut(s) 697
CviAII CATG 5 cut(s) 403, 485, 658, 865, 927
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 5 cut(s) 283, 305, 320, 521, 870
DpnI GATC 6 cut(s) 42, 87, 263, 464, 477, 825
DpnII GATC 6 cut(s) 40, 85, 261, 462, 475, 823
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
EciI GGCGGA 4 cut(s) 61, 215, 238, 256
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 177, 408
Eco147I AGGCCT 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 418
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 476
Eco88I CYCGRG 2 cut(s) 290, 500
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 2 cut(s) 177, 408
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 2 cut(s) 177, 408
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 5 cut(s) 406, 488, 661, 868, 930
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 617, 649
FatI CATG 5 cut(s) 402, 484, 657, 864, 926
Fnu4HI GCNGC 6 cut(s) 97, 195, 395, 421, 951, 954
FokI GGATG 3 cut(s) 55, 347, 776
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 6 cut(s) 97, 195, 395, 421, 951, 954
FspBI CTAG 1 cut(s) 149
GlaI GCGC 2 cut(s) 279, 755
GluI GCNGC 6 cut(s) 97, 195, 395, 421, 951, 954
GsuI CTGGAG 2 cut(s) 560, 707
HaeIII GGCC 4 cut(s) 14, 288, 423, 732
HapII CCGG 2 cut(s) 332, 417
HgaI GACGC 1 cut(s) 745
HhaI GCGC 2 cut(s) 280, 756
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 5 cut(s) 406, 488, 661, 868, 930
Hin6I GCGC 2 cut(s) 278, 754
HinP1I GCGC 2 cut(s) 278, 754
HincII GTYRAC 2 cut(s) 651, 748
HindII GTYRAC 2 cut(s) 651, 748
HindIII AAGCTT 1 cut(s) 353
HpaI GTTAAC 2 cut(s) 651, 748
HpaII CCGG 2 cut(s) 332, 417
HphI GGTGA 5 cut(s) 82, 133, 148, 202, 538
Hpy166II GTNNAC 2 cut(s) 651, 748
Hpy188I TCNGA 3 cut(s) 45, 308, 495
Hpy188III TCNNGA 8 cut(s) 35, 332, 349, 500, 539, 888, 914, 973
Hpy8I GTNNAC 2 cut(s) 651, 748
Hpy99I CGWCG 5 cut(s) 11, 41, 62, 257, 371
HpyAV CCTTC 3 cut(s) 232, 854, 979
HpyCH4III ACNGT 2 cut(s) 79, 696
HpyCH4IV ACGT 3 cut(s) 369, 438, 740
HpyCH4V TGCA 7 cut(s) 397, 532, 559, 637, 683, 932, 956
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 639
HpyF3I CTNAG 5 cut(s) 283, 305, 320, 521, 870
HpySE526I ACGT 3 cut(s) 369, 438, 740
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 5 cut(s) 406, 488, 661, 868, 930
HspAI GCGC 2 cut(s) 278, 754
Kpn2I TCCGGA 1 cut(s) 331
KspAI GTTAAC 2 cut(s) 651, 748
Kzo9I GATC 6 cut(s) 40, 85, 261, 462, 475, 823
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 4 cut(s) 83, 381, 937, 940
LweI GCATC 2 cut(s) 325, 519
MaeI CTAG 1 cut(s) 149
MaeII ACGT 3 cut(s) 369, 438, 740
MaeIII GTNAC 1 cut(s) 454
MalI GATC 6 cut(s) 42, 87, 263, 464, 477, 825
MboI GATC 6 cut(s) 40, 85, 261, 462, 475, 823
MboII GAAGA 7 cut(s) 229, 254, 337, 337, 472, 637, 833
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 306, 507
MluCI AATT 3 cut(s) 296, 598, 855
MlyI GAGTC 5 cut(s) 59, 145, 239, 544, 860
MmeI TCCRAC 1 cut(s) 228
MroI TCCGGA 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 7 cut(s) 378, 597, 621, 650, 747, 834, 1009
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 2 cut(s) 332, 417
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 855
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 2 cut(s) 278, 756
MwoI GCNNNNNNNGC 2 cut(s) 275, 639
NdeII GATC 6 cut(s) 40, 85, 261, 462, 475, 823
NlaIII CATG 5 cut(s) 406, 488, 661, 868, 930
NmeAIII GCCGAG 1 cut(s) 159
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 2 cut(s) 240, 512
PaeR7I CTCGAG 2 cut(s) 290, 500
PceI AGGCCT 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 6 cut(s) 31, 328, 496, 514, 580, 992
PkrI GCNGC 6 cut(s) 98, 196, 396, 422, 952, 955
PleI GAGTC 5 cut(s) 59, 144, 239, 543, 859
PpsI GAGTC 5 cut(s) 59, 144, 239, 543, 859
Ppu21I YACGTR 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 507
Psp1406I AACGTT 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspPI GGNCC 2 cut(s) 273, 730
PspXI VCTCGAGB 1 cut(s) 290
PstI CTGCAG 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 7 cut(s) 378, 597, 621, 650, 747, 834, 1009
SatI GCNGC 6 cut(s) 97, 195, 395, 421, 951, 954
Sau3AI GATC 6 cut(s) 40, 85, 261, 462, 475, 823
Sau96I GGNCC 2 cut(s) 273, 730
SchI GAGTC 5 cut(s) 59, 145, 239, 544, 860
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 2 cut(s) 306, 507
SfaNI GCATC 2 cut(s) 325, 519
SfcI CTRYAG 1 cut(s) 395
Sfr274I CTCGAG 2 cut(s) 290, 500
SfuI TTCGAA 2 cut(s) 240, 512
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 2 cut(s) 290, 500
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 5 cut(s) 290, 425, 500, 700, 886
SmoI CTYRAG 5 cut(s) 290, 425, 500, 700, 886
Sse9I AATT 3 cut(s) 296, 598, 855
SseBI AGGCCT 1 cut(s) 288
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 507
StuI AGGCCT 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 2 cut(s) 177, 408
TaaI ACNGT 2 cut(s) 79, 696
TaiI ACGT 3 cut(s) 372, 441, 743
TaqII GACCGA 2 cut(s) 65, 109
TasI AATT 3 cut(s) 296, 598, 855
TatI WGTACW 1 cut(s) 696
TauI GCSGC 2 cut(s) 197, 423
TfiI GAWTC 6 cut(s) 31, 328, 496, 514, 580, 992
Tru1I TTAA 7 cut(s) 378, 597, 621, 650, 747, 834, 1009
Tru9I TTAA 7 cut(s) 378, 597, 621, 650, 747, 834, 1009
TscAI CASTG 2 cut(s) 690, 795
TseI GCWGC 4 cut(s) 96, 394, 950, 953
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 2 cut(s) 690, 795
VpaK11BI GGWCC 1 cut(s) 273
XceI RCATGY 1 cut(s) 406
XhoI CTCGAG 2 cut(s) 290, 500
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 1 cut(s) 149
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.