RchiOBHm_Chr2g0091621

Protein phosphatase 1 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011350
Physical Location & Seq
Reverse (-)
5275300 .. 5277834
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46679

Sequence Viewer

Length: 945 bp
ATGGACGACCAGGCGCAACCACCACCGCCGAATCACGATGATCCGACGGCCGAGAACGACGGCGATCCTTCCTCCACCGTCCTCGATCTCACCAGCTTCCAACTCCACGACCTCCACTCGGTCGAGTTACCGCCGAGTCTCACCGAGTTAGACCTCACCGCCAACCGCCTCTCCTCCTTGGACACTCGCATTGGAACCCTCTCCAACCTCACCAAGCTCTCCTTCCGCCAGAACCTCATCGACGACGCCGCCGTCCAACCGATCTCCGCCTGGACCGCCCTCTCCGGCTCGAGGGATAATAAGCTGAACAAAATACCCGATGTGAGCATCTTCAAGAAGCTTCTGGTCTTCGACGTCTCTTTCAATGAGATTACATCGTTGCAGGGGCTTTCCAAGGTCTCCAGCACCCTCAAGGAGCTCTATGTCTCCAAAAATGAAGTTACTAAGATTGAGGAGATTGATCATCTGCATCAGCTTCAAATTCTTGAGCTAGGTTCGAACCGGTTAAGGGTGATGCAGGGTCTCGAAAATATGACAAAGTTAGAAGAGCTATGGCTGGGACGGAATCGTATAAAGGTAGTTAATTTATGTGGGCTGAAATGCATTAAGAAGATTAGCTTGCAAAGCAATCGGTTAACTTCTATGACTGGATTTGAGGAATGTGTTGCGCTTGAGGAACTGTACTTGAGCCATAATGGGATTTCCAAAATGGAAGGCCTCTCAACCTTGGTTAACCTGCGTGTGTTGGATGTATCTAATAACAAGCTAACATCAGTGAATGATATCGAACACCTAACAATGTTAGAAGACCTGTGGCTTAATGACAACCAGATAGAGTCAATTGAAGGTGTTGCTGAGGCTGTTGTTGGTTCGAGAGAGAAGCTGGCTACTATCTATCTCGAACACAATCCATGTGCAAAAATCCAAACTATTCCACTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

314

Amino Acids

35.04

Weight (kDa)

5.03

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 224 - 263 1.7e-09 Leucine Rich repeats (2 copies)
LRR_8 PF13855 224 - 278 5.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 744
AciI CCGC 8 cut(s) 26, 131, 159, 166, 226, 249, 267, 276
AclWI GGATC 2 cut(s) 35, 59
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 480
AcyI GRCGYC 2 cut(s) 246, 354
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 3 cut(s) 118, 291, 508
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 334, 364, 479, 845
AjnI CCWGG 2 cut(s) 9, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 5 cut(s) 143, 361, 403, 430, 527
AlwI GGATC 2 cut(s) 35, 59
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 2 cut(s) 48, 715
ApoI RAATTY 1 cut(s) 480
AsiGI ACCGGT 1 cut(s) 501
AspLEI GCGC 2 cut(s) 16, 670
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 5 cut(s) 82, 133, 148, 202, 523
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 340, 813
Bbv12I GWGCWC 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 855
BceAI ACGGC 3 cut(s) 63, 76, 236
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 2 cut(s) 11, 271
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 5 cut(s) 143, 361, 403, 430, 527
BfaI CTAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 744
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 11, 271
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 11, 271
BmsI GCATC 3 cut(s) 336, 478, 504
BpiI GAAGAC 2 cut(s) 340, 813
BpmI CTGGAG 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 4 cut(s) 395, 506, 692, 706
BsaHI GRCGYC 2 cut(s) 246, 354
BsaI GGTCTC 2 cut(s) 403, 527
BsaJI CCNNGG 3 cut(s) 177, 393, 726
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 291, 508
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 652
BseBI CCWGG 2 cut(s) 11, 271
BseDI CCNNGG 3 cut(s) 177, 393, 726
BseGI GGATG 1 cut(s) 754
BseLI CCNNNNNNNGG 3 cut(s) 118, 291, 508
BseMII CTCAG 1 cut(s) 846
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 163, 467
BseX3I CGGCCG 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 556
Bsh1285I CGRYCG 2 cut(s) 51, 123
BshFI GGCC 2 cut(s) 50, 717
BshTI ACCGGT 1 cut(s) 501
BsiEI CGRYCG 2 cut(s) 51, 123
BsiHKAI GWGCWC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 285, 502
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 3 cut(s) 118, 291, 508
BsmAI GTCTC 5 cut(s) 143, 361, 403, 430, 527
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 1 cut(s) 573
BsnI GGCC 2 cut(s) 50, 717
Bso31I GGTCTC 2 cut(s) 403, 527
BsoBI CYCGRG 1 cut(s) 289
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 5 cut(s) 40, 64, 85, 261, 460
BspACI CCGC 8 cut(s) 26, 131, 159, 166, 226, 249, 267, 276
BspANI GGCC 2 cut(s) 50, 717
BspCNI CTCAG 1 cut(s) 847
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 2 cut(s) 35, 59
BspQI GCTCTTC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 497
BspTNI GGTCTC 2 cut(s) 403, 527
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 3 cut(s) 177, 393, 726
BssMI GATC 5 cut(s) 40, 64, 85, 261, 460
BssNI GRCGYC 2 cut(s) 246, 354
BssT1I CCWWGG 3 cut(s) 177, 393, 726
Bst2UI CCWGG 2 cut(s) 11, 271
Bst4CI ACNGT 2 cut(s) 79, 681
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 2 cut(s) 246, 354
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 620, 885
BstDEI CTNAG 2 cut(s) 444, 855
BstF5I GGATG 1 cut(s) 754
BstHHI GCGC 2 cut(s) 16, 670
BstKTI GATC 5 cut(s) 43, 67, 88, 264, 463
BstMAI GTCTC 5 cut(s) 143, 361, 403, 430, 527
BstMBI GATC 5 cut(s) 40, 64, 85, 261, 460
BstMCI CGRYCG 2 cut(s) 51, 123
BstMWI GCNNNNNNNGC 2 cut(s) 275, 624
BstNI CCWGG 2 cut(s) 11, 271
BstSCI CCNGG 2 cut(s) 9, 269
BstV2I GAAGAC 2 cut(s) 340, 813
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 2 cut(s) 50, 717
BtsCI GGATG 1 cut(s) 754
BtsI GCAGTG 1 cut(s) 935
BtsIMutI CAGTG 2 cut(s) 780, 935
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 2 cut(s) 620, 885
CfoI GCGC 2 cut(s) 16, 670
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 682
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 1 cut(s) 912
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 2 cut(s) 444, 855
DpnI GATC 5 cut(s) 42, 66, 87, 263, 462
DpnII GATC 5 cut(s) 40, 64, 85, 261, 460
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 2 cut(s) 215, 256
Ecl136II GAGCTC 1 cut(s) 418
EclXI CGGCCG 1 cut(s) 48
Eco130I CCWWGG 3 cut(s) 177, 393, 726
Eco147I AGGCCT 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 2 cut(s) 403, 527
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 9, 269
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 3 cut(s) 177, 393, 726
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 3 cut(s) 177, 393, 726
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 1 cut(s) 915
FaiI YATR 8 cut(s) 423, 533, 553, 572, 589, 644, 693, 913
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 602, 634
FaqI GGGAC 1 cut(s) 573
FatI CATG 1 cut(s) 911
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 491
GlaI GCGC 2 cut(s) 15, 669
GluI GCNGC 1 cut(s) 249
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 2 cut(s) 50, 717
HapII CCGG 2 cut(s) 285, 502
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 16, 670
Hin1I GRCGYC 2 cut(s) 246, 354
Hin1II CATG 1 cut(s) 915
Hin6I GCGC 2 cut(s) 14, 668
HinP1I GCGC 2 cut(s) 14, 668
HincII GTYRAC 2 cut(s) 636, 733
HindII GTYRAC 2 cut(s) 636, 733
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 4 cut(s) 31, 136, 565, 836
HpaI GTTAAC 2 cut(s) 636, 733
HpaII CCGG 2 cut(s) 285, 502
HphI GGTGA 5 cut(s) 82, 133, 148, 202, 523
Hpy166II GTNNAC 2 cut(s) 636, 733
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 6 cut(s) 35, 334, 485, 524, 873, 899
Hpy8I GTNNAC 2 cut(s) 636, 733
Hpy99I CGWCG 5 cut(s) 49, 62, 245, 248, 356
HpyAV CCTTC 4 cut(s) 78, 232, 707, 839
HpyCH4III ACNGT 2 cut(s) 79, 681
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 7 cut(s) 382, 469, 517, 603, 622, 917, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 624
HpyF3I CTNAG 2 cut(s) 444, 855
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 2 cut(s) 246, 354
Hsp92II CATG 1 cut(s) 915
HspAI GCGC 2 cut(s) 14, 668
Ksp22I TGATCA 1 cut(s) 460
KspAI GTTAAC 2 cut(s) 636, 733
Kzo9I GATC 5 cut(s) 40, 64, 85, 261, 460
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 1 cut(s) 415
LweI GCATC 3 cut(s) 336, 478, 504
MaeI CTAG 1 cut(s) 491
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 126, 439
MalI GATC 5 cut(s) 42, 66, 87, 263, 462
MboI GATC 5 cut(s) 40, 64, 85, 261, 460
MboII GAAGA 5 cut(s) 322, 340, 557, 622, 818
MfeI CAATTG 1 cut(s) 840
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 3 cut(s) 480, 583, 840
MlyI GAGTC 2 cut(s) 145, 845
MmeI TCCRAC 5 cut(s) 68, 124, 228, 280, 726
Mph1103I ATGCAT 1 cut(s) 605
MseI TTAA 6 cut(s) 506, 582, 606, 635, 732, 819
MspI CCGG 2 cut(s) 285, 502
MspR9I CCNGG 2 cut(s) 11, 271
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 2 cut(s) 11, 271
MwoI GCNNNNNNNGC 2 cut(s) 275, 624
NdeII GATC 5 cut(s) 40, 64, 85, 261, 460
NlaIII CATG 1 cut(s) 915
NlaIV GGNNCC 1 cut(s) 196
NmeAIII GCCGAG 2 cut(s) 76, 159
NsiI ATGCAT 1 cut(s) 605
NspV TTCGAA 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 289
PceI AGGCCT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 31, 565
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 2 cut(s) 144, 844
PpsI GAGTC 2 cut(s) 144, 844
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 9, 269
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 2 cut(s) 9, 269
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 273
PspXI VCTCGAGB 1 cut(s) 289
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
SacI GAGCTC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 6 cut(s) 506, 582, 606, 635, 732, 819
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 5 cut(s) 40, 64, 85, 261, 460
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 145, 845
ScrFI CCNGG 2 cut(s) 11, 271
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 3 cut(s) 336, 478, 504
Sfr274I CTCGAG 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 289
SmlI CTYRAG 5 cut(s) 289, 410, 485, 671, 685
SmoI CTYRAG 5 cut(s) 289, 410, 485, 671, 685
Sse9I AATT 3 cut(s) 480, 583, 840
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 8 cut(s) 26, 131, 159, 166, 226, 249, 267, 276
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 1 cut(s) 420
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 9, 269
StyI CCWWGG 3 cut(s) 177, 393, 726
TaaI ACNGT 2 cut(s) 79, 681
TaiI ACGT 1 cut(s) 357
TaqII GACCGA 1 cut(s) 109
TasI AATT 3 cut(s) 480, 583, 840
TatI WGTACW 1 cut(s) 681
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 31, 565
Tru1I TTAA 6 cut(s) 506, 582, 606, 635, 732, 819
Tru9I TTAA 6 cut(s) 506, 582, 606, 635, 732, 819
TscAI CASTG 2 cut(s) 780, 942
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 2 cut(s) 780, 942
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 480
XhoI CTCGAG 1 cut(s) 289
XspI CTAG 1 cut(s) 491
ZraI GACGTC 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.