RchiOBHm_Chr2g0091541

Protein phosphatase 1 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011350
Physical Location & Seq
Reverse (-)
5187699 .. 5190297
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46671

Sequence Viewer

Length: 1185 bp
ATGGACGACCAGGCGCAACCACCACCGCCGAATCACGATGATCCGACGGCCGAGAACGACGGCGATCCTTCCTCCACCGTCCTCGATCTCACCAGCTTCCAACTCCACGACCTCCACTCGGTCGAGTTACCGCCGAGTCTCACCGAGTTAGACCTCACCGCCAACCGCCTCTCCTCCTTGGACACTCGCATTGGAACCCTCTCCAACCTCACCAAGCTCTCCTTCCGCCAGAACCTCATCGACGACGCCGCCGTCCAACCGATCTCCGCCTGGACCGCCCTCTCCGGCCTCGAGGAGTTGGTGCTGAGGGATAATAAGCTGAACAAAATACCCGATGTGAGCATCTTCAAGAAGCTTCTGGTCTTCGACGTCTCTTTCAATGAGATTACATCGTTGCAGGGGCTTTCCAAGGTCTCCAGCACCCTCAAGGAGCTCTATGTCTCCAAAAATGAAGTTACTAAGATTGAGGAGATTGATCATCTGCATCAGCTTCAAATTCTTGAGCTAGGTTCGAACCGGTTAAGGGTGATGCAGGGTCTCGAAAATATGACAAAGTTAGAAGAGCTATGGCTGGGACGGAATCGTATAAAGGTAGTTAATTTATGTGGGCTGAAATGCATTAAGAAGATTAGCTTGCAAAGCAATCGGTTAACTTCTATGACTGGATTTGAGGAATGTGTTGCGCTTGAGGAACTGTACTTGAGCCATAATGGGATTTCCAAAATGGAAGGCCTCTCAACCTTGGTTAACCTGCGTGTGTTGGATGTATCTAATAACAAGCTAACATCAGTGAATGATATCGAACACCTAACAATGTTAGAAGACCTGTGGCTTAATGACAACCAGATAGAGTCAATTGAAGGTGTTGCTGAGGCTGTTGTTGGTTCGAGAGAGAAGCTGGCTACTATCTATCTCGAACACAATCCATGTGCAAAAAATCCAAACTATTCCACTGCATTGAAAAAACCTTCCCGAACATACAGCAGATTGATTCTAATATATTTGCTTAAAAGTTATGGTGGCTTCAGTTTTGTCAACATGATTTCTACGAAGGCACTGGAAATCTATTGCTGCAATACAGGCCGATGTCCAGGATTCTTGCTTCACATGACTAATTTGACGGATGGCCGGTGCCAAGAGGATATGCTCTATAAAGTAGTTGCTAGAGTTTATAATGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

394

Amino Acids

44.21

Weight (kDa)

5.32

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 229 - 268 2.4e-09 Leucine Rich repeats (2 copies)
LRR_8 PF13855 229 - 283 3.5e-06 Leucine rich repeat
LRR_4 PF12799 250 - 289 6.3e-08 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1173
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 372
AbsI CCTCGAGG 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 759
AccB1I GGYRCC 1 cut(s) 1131
AciI CCGC 8 cut(s) 26, 131, 159, 166, 226, 249, 267, 276
AclWI GGATC 2 cut(s) 35, 59
AcoI YGGCCR 2 cut(s) 48, 1126
AcsI RAATTY 1 cut(s) 495
AcuI CTGAAG 1 cut(s) 1009
AcyI GRCGYC 2 cut(s) 246, 369
AfaI GTAC 1 cut(s) 698
AfiI CCNNNNNNNGG 2 cut(s) 118, 523
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 5 cut(s) 349, 379, 494, 860, 961
AjnI CCWGG 3 cut(s) 9, 269, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 5 cut(s) 143, 376, 418, 445, 542
AlwI GGATC 2 cut(s) 35, 59
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 5 cut(s) 48, 286, 730, 1081, 1126
ApeKI GCWGC 1 cut(s) 1071
ApoI RAATTY 1 cut(s) 495
AsiGI ACCGGT 1 cut(s) 516
AspLEI GCGC 2 cut(s) 16, 685
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 5 cut(s) 82, 133, 148, 202, 538
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 1131
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 2 cut(s) 355, 828
Bbv12I GWGCWC 1 cut(s) 435
BbvCI CCTCAGC 2 cut(s) 305, 870
BbvI GCAGC 1 cut(s) 1058
BccI CCATC 1 cut(s) 1118
BceAI ACGGC 3 cut(s) 63, 76, 236
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 3 cut(s) 11, 271, 1092
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 5 cut(s) 143, 376, 418, 445, 542
BfaI CTAG 2 cut(s) 506, 1164
BfuAI ACCTGC 1 cut(s) 759
BisI GCNGC 2 cut(s) 249, 1072
BlsI GCNGC 2 cut(s) 250, 1073
Bme1390I CCNGG 3 cut(s) 11, 271, 1092
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 196, 1133
BmrFI CCNGG 3 cut(s) 11, 271, 1092
BmsI GCATC 3 cut(s) 351, 493, 519
BpiI GAAGAC 2 cut(s) 355, 828
BpmI CTGGAG 1 cut(s) 400
Bpu10I CCTNAGC 2 cut(s) 305, 870
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 4 cut(s) 410, 521, 707, 721
BsaHI GRCGYC 2 cut(s) 246, 369
BsaI GGTCTC 2 cut(s) 418, 542
BsaJI CCNNGG 3 cut(s) 177, 408, 741
BsaWI WCCGGW 1 cut(s) 516
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 523
Bse118I RCCGGY 2 cut(s) 516, 1128
Bse1I ACTGG 2 cut(s) 667, 1062
BseBI CCWGG 3 cut(s) 11, 271, 1092
BseDI CCNNGG 3 cut(s) 177, 408, 741
BseGI GGATG 2 cut(s) 769, 1129
BseLI CCNNNNNNNGG 2 cut(s) 118, 523
BseMII CTCAG 2 cut(s) 296, 861
BseNI ACTGG 2 cut(s) 667, 1062
BseRI GAGGAG 3 cut(s) 163, 308, 482
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 1058
BseYI CCCAGC 1 cut(s) 571
Bsh1285I CGRYCG 2 cut(s) 51, 123
BshFI GGCC 5 cut(s) 50, 288, 732, 1083, 1128
BshNI GGYRCC 1 cut(s) 1131
BshTI ACCGGT 1 cut(s) 516
BsiEI CGRYCG 2 cut(s) 51, 123
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 285, 517, 1129
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 118, 523
BsmAI GTCTC 5 cut(s) 143, 376, 418, 445, 542
BsmBI CGTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 5 cut(s) 50, 288, 732, 1083, 1128
Bso31I GGTCTC 2 cut(s) 418, 542
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 5 cut(s) 40, 64, 85, 261, 475
BspACI CCGC 8 cut(s) 26, 131, 159, 166, 226, 249, 267, 276
BspANI GGCC 5 cut(s) 50, 288, 732, 1083, 1128
BspCNI CTCAG 2 cut(s) 297, 862
BspLI GGNNCC 2 cut(s) 196, 1133
BspMI ACCTGC 1 cut(s) 759
BspPI GGATC 2 cut(s) 35, 59
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 1131
BspTNI GGTCTC 2 cut(s) 418, 542
BsrFI RCCGGY 2 cut(s) 516, 1128
BsrI ACTGG 2 cut(s) 667, 1062
BssAI RCCGGY 2 cut(s) 516, 1128
BssECI CCNNGG 3 cut(s) 177, 408, 741
BssMI GATC 5 cut(s) 40, 64, 85, 261, 475
BssNI GRCGYC 2 cut(s) 246, 369
BssT1I CCWWGG 3 cut(s) 177, 408, 741
Bst2UI CCWGG 3 cut(s) 11, 271, 1092
Bst4CI ACNGT 2 cut(s) 79, 696
Bst6I CTCTTC 1 cut(s) 555
BstACI GRCGYC 2 cut(s) 246, 369
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 635, 900
BstDEI CTNAG 3 cut(s) 305, 459, 870
BstF5I GGATG 2 cut(s) 769, 1129
BstHHI GCGC 2 cut(s) 16, 685
BstKTI GATC 5 cut(s) 43, 67, 88, 264, 478
BstMAI GTCTC 5 cut(s) 143, 376, 418, 445, 542
BstMBI GATC 5 cut(s) 40, 64, 85, 261, 475
BstMCI CGRYCG 2 cut(s) 51, 123
BstMWI GCNNNNNNNGC 3 cut(s) 275, 639, 1080
BstNI CCWGG 3 cut(s) 11, 271, 1092
BstSCI CCNGG 3 cut(s) 9, 269, 1090
BstV1I GCAGC 1 cut(s) 1058
BstV2I GAAGAC 2 cut(s) 355, 828
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 5 cut(s) 50, 288, 732, 1083, 1128
BtsCI GGATG 2 cut(s) 769, 1129
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 3 cut(s) 795, 951, 1055
BveI ACCTGC 1 cut(s) 759
Cac8I GCNNGC 2 cut(s) 635, 900
CfoI GCGC 2 cut(s) 16, 685
Cfr10I RCCGGY 2 cut(s) 516, 1128
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 697
CspAI ACCGGT 1 cut(s) 516
CviAII CATG 3 cut(s) 927, 1039, 1108
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 3 cut(s) 305, 459, 870
DpnI GATC 5 cut(s) 42, 66, 87, 263, 477
DpnII GATC 5 cut(s) 40, 64, 85, 261, 475
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 48, 1126
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
EciI GGCGGA 2 cut(s) 215, 256
Ecl136II GAGCTC 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 48
Eco130I CCWWGG 3 cut(s) 177, 408, 741
Eco147I AGGCCT 1 cut(s) 732
Eco24I GRGCYC 1 cut(s) 435
Eco31I GGTCTC 2 cut(s) 418, 542
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 1009
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 9, 269, 1090
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 3 cut(s) 177, 408, 741
EcoT22I ATGCAT 1 cut(s) 620
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 3 cut(s) 177, 408, 741
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 3 cut(s) 930, 1042, 1111
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 617, 649
FaqI GGGAC 1 cut(s) 588
FatI CATG 3 cut(s) 926, 1038, 1107
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 249, 1072
FokI GGATG 2 cut(s) 776, 1136
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 249, 1072
FspBI CTAG 2 cut(s) 506, 1164
GlaI GCGC 2 cut(s) 15, 684
GluI GCNGC 2 cut(s) 249, 1072
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 5 cut(s) 50, 288, 732, 1083, 1128
HapII CCGG 3 cut(s) 285, 517, 1129
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 16, 685
Hin1I GRCGYC 2 cut(s) 246, 369
Hin1II CATG 3 cut(s) 930, 1042, 1111
Hin6I GCGC 2 cut(s) 14, 683
HinP1I GCGC 2 cut(s) 14, 683
HincII GTYRAC 4 cut(s) 651, 748, 1036, 1180
HindII GTYRAC 4 cut(s) 651, 748, 1036, 1180
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 31, 136, 580, 851, 991, 1095
HpaI GTTAAC 2 cut(s) 651, 748
HpaII CCGG 3 cut(s) 285, 517, 1129
HphI GGTGA 5 cut(s) 82, 133, 148, 202, 538
Hpy166II GTNNAC 4 cut(s) 651, 748, 1036, 1180
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 7 cut(s) 35, 349, 500, 539, 888, 914, 972
Hpy8I GTNNAC 4 cut(s) 651, 748, 1036, 1180
Hpy99I CGWCG 5 cut(s) 49, 62, 245, 248, 371
HpyAV CCTTC 6 cut(s) 78, 232, 722, 854, 978, 1045
HpyCH4III ACNGT 2 cut(s) 79, 696
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 8 cut(s) 397, 484, 532, 618, 637, 932, 956, 1074
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 639, 1080
HpyF3I CTNAG 3 cut(s) 305, 459, 870
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 2 cut(s) 246, 369
Hsp92II CATG 3 cut(s) 930, 1042, 1111
HspAI GCGC 2 cut(s) 14, 683
Ksp22I TGATCA 1 cut(s) 475
KspAI GTTAAC 2 cut(s) 651, 748
Kzo9I GATC 5 cut(s) 40, 64, 85, 261, 475
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 1 cut(s) 1058
LweI GCATC 3 cut(s) 351, 493, 519
MaeI CTAG 2 cut(s) 506, 1164
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 126, 454
MalI GATC 5 cut(s) 42, 66, 87, 263, 477
MboI GATC 5 cut(s) 40, 64, 85, 261, 475
MboII GAAGA 5 cut(s) 337, 355, 572, 637, 833
MfeI CAATTG 1 cut(s) 855
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 4 cut(s) 495, 598, 855, 1114
MlyI GAGTC 2 cut(s) 145, 860
MmeI TCCRAC 5 cut(s) 68, 124, 228, 280, 741
Mph1103I ATGCAT 1 cut(s) 620
MseI TTAA 7 cut(s) 521, 597, 621, 650, 747, 834, 1008
MspI CCGG 3 cut(s) 285, 517, 1129
MspR9I CCNGG 3 cut(s) 11, 271, 1092
MunI CAATTG 1 cut(s) 855
MvaI CCWGG 3 cut(s) 11, 271, 1092
MwoI GCNNNNNNNGC 3 cut(s) 275, 639, 1080
NdeII GATC 5 cut(s) 40, 64, 85, 261, 475
NlaIII CATG 3 cut(s) 930, 1042, 1111
NlaIV GGNNCC 2 cut(s) 196, 1133
NmeAIII GCCGAG 2 cut(s) 76, 159
NsiI ATGCAT 1 cut(s) 620
NspV TTCGAA 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 290
PceI AGGCCT 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 4 cut(s) 31, 580, 991, 1095
PfoI TCCNGGA 1 cut(s) 1090
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 2 cut(s) 250, 1073
PleI GAGTC 2 cut(s) 144, 859
PpsI GAGTC 2 cut(s) 144, 859
PsiI TTATAA 1 cut(s) 1173
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 3 cut(s) 9, 269, 1090
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 3 cut(s) 9, 269, 1090
PspN4I GGNNCC 2 cut(s) 196, 1133
PspPI GGNCC 1 cut(s) 273
PspXI VCTCGAGB 1 cut(s) 290
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
SacI GAGCTC 1 cut(s) 435
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 7 cut(s) 521, 597, 621, 650, 747, 834, 1008
SatI GCNGC 2 cut(s) 249, 1072
Sau3AI GATC 5 cut(s) 40, 64, 85, 261, 475
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 145, 860
ScrFI CCNGG 3 cut(s) 11, 271, 1092
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 3 cut(s) 351, 493, 519
Sfr274I CTCGAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 5 cut(s) 290, 425, 500, 686, 700
SmoI CTYRAG 5 cut(s) 290, 425, 500, 686, 700
Sse9I AATT 4 cut(s) 495, 598, 855, 1114
SseBI AGGCCT 1 cut(s) 732
SsiI CCGC 8 cut(s) 26, 131, 159, 166, 226, 249, 267, 276
SspMI CTAG 2 cut(s) 506, 1164
SstI GAGCTC 1 cut(s) 435
StuI AGGCCT 1 cut(s) 732
StyD4I CCNGG 3 cut(s) 9, 269, 1090
StyI CCWWGG 3 cut(s) 177, 408, 741
TaaI ACNGT 2 cut(s) 79, 696
TaiI ACGT 1 cut(s) 372
TaqII GACCGA 1 cut(s) 109
TasI AATT 4 cut(s) 495, 598, 855, 1114
TatI WGTACW 1 cut(s) 696
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 4 cut(s) 31, 580, 991, 1095
Tru1I TTAA 7 cut(s) 521, 597, 621, 650, 747, 834, 1008
Tru9I TTAA 7 cut(s) 521, 597, 621, 650, 747, 834, 1008
TscAI CASTG 3 cut(s) 795, 958, 1062
TseI GCWGC 1 cut(s) 1071
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 2 cut(s) 592, 1136
TspRI CASTG 3 cut(s) 795, 958, 1062
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 495
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 2 cut(s) 506, 1164
ZraI GACGTC 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.