pycom02g05000

Protein phosphatase 1 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011350
Physical Location & Seq
Reverse (-)
3285251 .. 3287287
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05000.3

Sequence Viewer

Length: 1020 bp
ATGGCCGACCAGACTGAAACGCCACCGCCGGGTCAGAATCCCGTAGATCACGATGATCAGACGGCGGACGACGATCCGTCCTCGACGGTCCTCGATCTCACCAGCTTCCAGCTCCACGACCTCGACTCGGTCGAGTTATCACCGAGTCTAACAGAGTTAGACCTGACGGCGAACCGCCTCACCGGTTTGGACCCTCGGATTGCGACCCTCTCGAACCTCAAAAAGCTCTCTCTCCGCCAGAACCTCATCGAAGACGCCGCCGTCGAACCGATCTCCGGCTGGGACGCCCTCTCCTGTCTCGAGGAGTTGGTGCTGAGGGATAATAAGCTCGGAAAAATACCTGATGTCAGCATATTCACGAAGCTTCTGGTTTTCGACGTTTCGTTCAACGAGATTACGTCGTTACATGGATTGTCCAAGGTCACCAGTACCCTCAAGGAGCTGTACGTGTCGAAAAATGAAGTCACCCAGATTGAAGAAATTGAGCACCTCCACGAGCTTCTGATTCTCGAGCTCGGTTCGAATCGATTGCGGGTGATGGAGAATTTGCAGAACTTGACAAAGTTGCAGGAGCTGTGGCTGGGGCGGAATCGGATTAAGGTGGTGAATTTGTGTGGGTTGAAATGCATCAAGAAGCTGAGCTTGCAAAGCAATCGGTTAACTTCGATGGCGGGATTTGAGGAGTGCGTTGCTCTAGAGGAGTTGTACTTGAGCCATAATGGCATTTCGAAAATGGAAGGCCTCTCAACGTTAGTCAACCTACGTGTCCTGGATGTATCGAATAATAAGCTAACATCGGTGGAGGGTATAGAAAGCCTAACAATGTTAGAAGATCTATGGCTTAATGACAACAGCATAGAGTCACTTGAAGGCTTTGCCGAGGTTCTTGCTGGTTCAAGAGAGAAGCTCACTACCATCTATCTCGAAAAAAACCCATGTGCAAAGTCTCCAAATTATGCTACTACCTTGAGACAAATCTTCCCAAATATCGAGCAAATTGATTCTCATATGTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

340

Amino Acids

37.87

Weight (kDa)

4.69

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19680
fragaria_vesca FvH4_1g05880 FvH4_1g05880
malus_domestica MD02G1060900.v1.1 MD15G1194400.v1.1
prunus_persica Prupe.7G222100_v2.0.a1 Prupe.7G222100_v2.0.a1
pyrus_communis pycom02g05000 pycom15g17400
rosa_chinensis RchiOBHm_Chr2g0091541 RchiOBHm_Chr2g0091621
rosa_laevigata RLG00000016234
rosa_multiflora Rmu_sc0002407.1_g000003
rosa_roxburghii Rroxscaffold_2G00149950
rosa_rugosa Rorug02G0018600
rosa_samantha Rh2AG063800 Rh2BG063200 Rh2CG064900 Rh2DG063300
rosa_wichuraiana Rw2G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AciI CCGC 8 cut(s) 26, 65, 175, 235, 258, 532, 586, 671
AclI AACGTT 1 cut(s) 749
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 544, 607
AcyI GRCGYC 2 cut(s) 255, 285
AfaI GTAC 3 cut(s) 430, 446, 707
AfiI CCNNNNNNNGG 3 cut(s) 29, 127, 275
AflIII ACRYGT 2 cut(s) 447, 763
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 5 cut(s) 388, 476, 622, 869, 897
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 768
Alw21I GWGCWC 2 cut(s) 489, 516
Alw26I GTCTC 3 cut(s) 302, 951, 964
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 574
Ama87I CYCGRG 2 cut(s) 299, 509
AoxI GGCC 2 cut(s) 3, 739
ApoI RAATTY 2 cut(s) 544, 607
AsiGI ACCGGT 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 88, 190
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 7 cut(s) 91, 132, 172, 415, 457, 547, 616
AsuII TTCGAA 2 cut(s) 521, 728
AvaI CYCGRG 2 cut(s) 299, 509
AvaII GGWCC 2 cut(s) 88, 190
BanII GRGCYC 1 cut(s) 516
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 489, 516
BbvCI CCTCAGC 1 cut(s) 314
BccI CCATC 3 cut(s) 532, 661, 923
BceAI ACGGC 3 cut(s) 78, 183, 245
BcgI CGANNNNNNTGC 6 cut(s) 511, 545, 635, 669, 869, 903
BciT130I CCWGG 1 cut(s) 770
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 3 cut(s) 302, 951, 964
BfaI CTAG 1 cut(s) 695
BglI GCCNNNNNGGC 1 cut(s) 720
BglII AGATCT 1 cut(s) 832
BisI GCNGC 1 cut(s) 258
BlpI GCTNAGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 30, 770
Bme18I GGWCC 2 cut(s) 88, 190
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 2 cut(s) 299, 509
BmgT120I GGNCC 2 cut(s) 88, 190
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 30, 770
BmsI GCATC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 891, 923
Bpu10I CCTNAGC 1 cut(s) 314
Bpu1102I GCTNAGC 1 cut(s) 638
Bpu14I TTCGAA 2 cut(s) 521, 728
BpuEI CTTGAG 3 cut(s) 419, 730, 988
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 526
BsaAI YACGTR 2 cut(s) 448, 764
BsaHI GRCGYC 2 cut(s) 255, 285
BsaJI CCNNGG 3 cut(s) 194, 417, 879
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 127, 275
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 770
BseCI ATCGAT 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 194, 417, 879
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 3 cut(s) 29, 127, 275
BseMII CTCAG 2 cut(s) 305, 629
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 3 cut(s) 317, 695, 713
BseYI CCCAGC 2 cut(s) 279, 580
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 5, 741
BshTI ACCGGT 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 526
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 489, 516
BsiHKCI CYCGRG 2 cut(s) 299, 509
BsiSI CCGG 3 cut(s) 29, 183, 276
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 29, 127, 275
BsmAI GTCTC 3 cut(s) 302, 951, 964
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 5, 741
BsoBI CYCGRG 2 cut(s) 299, 509
Bsp119I TTCGAA 2 cut(s) 521, 728
Bsp1286I GDGCHC 2 cut(s) 489, 516
Bsp143I GATC 6 cut(s) 46, 55, 73, 94, 270, 832
Bsp1720I GCTNAGC 1 cut(s) 638
BspACI CCGC 8 cut(s) 26, 65, 175, 235, 258, 532, 586, 671
BspANI GGCC 2 cut(s) 5, 741
BspCNI CTCAG 2 cut(s) 306, 630
BspDI ATCGAT 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 68
BspT104I TTCGAA 2 cut(s) 521, 728
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 194, 417, 879
BssMI GATC 6 cut(s) 46, 55, 73, 94, 270, 832
BssNI GRCGYC 2 cut(s) 255, 285
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 2 cut(s) 255, 285
BstBAI YACGTR 2 cut(s) 448, 764
BstBI TTCGAA 2 cut(s) 521, 728
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 314, 638
BstEII GGTNACC 1 cut(s) 421
BstF5I GGATG 1 cut(s) 778
BstKTI GATC 6 cut(s) 49, 58, 76, 97, 273, 835
BstMAI GTCTC 3 cut(s) 302, 951, 964
BstMBI GATC 6 cut(s) 46, 55, 73, 94, 270, 832
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 643, 648, 720
BstNI CCWGG 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 28, 768
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
Bsu15I ATCGAT 1 cut(s) 526
BsuRI GGCC 2 cut(s) 5, 741
BsuTUI ATCGAT 1 cut(s) 526
BtsCI GGATG 1 cut(s) 778
Cac8I GCNNGC 1 cut(s) 644
CaiI CAGNNNCTG 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 88, 190
ClaI ATCGAT 1 cut(s) 526
CseI GACGC 2 cut(s) 263, 293
Csp6I GTAC 3 cut(s) 429, 445, 706
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 2 cut(s) 407, 936
CviQI GTAC 3 cut(s) 429, 445, 706
DdeI CTNAG 2 cut(s) 314, 638
DpnI GATC 6 cut(s) 48, 57, 75, 96, 272, 834
DpnII GATC 6 cut(s) 46, 55, 73, 94, 270, 832
DrdI GACNNNNNNGTC 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 76
EciI GGCGGA 3 cut(s) 80, 224, 601
Ecl136II GAGCTC 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 741
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 88, 190
Eco53kI GAGCTC 1 cut(s) 514
Eco88I CYCGRG 2 cut(s) 299, 509
Eco91I GGTNACC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 514
EcoO65I GGTNACC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 410, 939
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 406, 935
FauI CCCGC 2 cut(s) 525, 664
FauNDI CATATG 1 cut(s) 1008
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 695
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 2 cut(s) 283, 584
HaeIII GGCC 2 cut(s) 5, 741
HapII CCGG 3 cut(s) 29, 183, 276
HgaI GACGC 2 cut(s) 263, 293
Hin1I GRCGYC 2 cut(s) 255, 285
Hin1II CATG 2 cut(s) 410, 939
HincII GTYRAC 2 cut(s) 660, 757
HindII GTYRAC 2 cut(s) 660, 757
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 8 cut(s) 37, 125, 145, 505, 523, 589, 860, 1001
HpaI GTTAAC 1 cut(s) 660
HpaII CCGG 3 cut(s) 29, 183, 276
HphI GGTGA 7 cut(s) 91, 132, 172, 415, 457, 547, 616
Hpy166II GTNNAC 2 cut(s) 660, 757
Hpy188I TCNGA 6 cut(s) 36, 60, 198, 332, 504, 594
Hpy188III TCNNGA 9 cut(s) 50, 211, 299, 358, 509, 631, 695, 897, 923
Hpy8I GTNNAC 2 cut(s) 660, 757
Hpy99I CGWCG 5 cut(s) 74, 88, 266, 380, 403
HpyAV CCTTC 2 cut(s) 731, 863
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 5 cut(s) 378, 398, 447, 749, 763
HpyCH4V TGCA 6 cut(s) 550, 568, 627, 646, 941, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 643, 648, 720
HpyF3I CTNAG 2 cut(s) 314, 638
HpySE526I ACGT 5 cut(s) 378, 398, 447, 749, 763
Hsp92I GRCGYC 2 cut(s) 255, 285
Hsp92II CATG 2 cut(s) 410, 939
Ksp22I TGATCA 1 cut(s) 55
KspAI GTTAAC 1 cut(s) 660
Kzo9I GATC 6 cut(s) 46, 55, 73, 94, 270, 832
LmnI GCTCC 3 cut(s) 117, 439, 571
LweI GCATC 1 cut(s) 636
MaeI CTAG 1 cut(s) 695
MaeII ACGT 5 cut(s) 378, 398, 447, 749, 763
MaeIII GTNAC 4 cut(s) 402, 421, 463, 861
MalI GATC 6 cut(s) 48, 57, 75, 96, 272, 834
MboI GATC 6 cut(s) 46, 55, 73, 94, 270, 832
MboII GAAGA 4 cut(s) 263, 488, 842, 970
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 2 cut(s) 489, 516
MluCI AATT 5 cut(s) 480, 544, 607, 952, 996
MlyI GAGTC 3 cut(s) 119, 154, 869
Mph1103I ATGCAT 1 cut(s) 629
MseI TTAA 3 cut(s) 597, 659, 843
MspI CCGG 3 cut(s) 29, 183, 276
MspR9I CCNGG 2 cut(s) 30, 770
MvaI CCWGG 1 cut(s) 770
MwoI GCNNNNNNNGC 3 cut(s) 643, 648, 720
NciI CCSGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 1008
NdeII GATC 6 cut(s) 46, 55, 73, 94, 270, 832
NlaIII CATG 2 cut(s) 410, 939
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 3 cut(s) 421, 463, 861
NsiI ATGCAT 1 cut(s) 629
NspV TTCGAA 2 cut(s) 521, 728
PaeR7I CTCGAG 2 cut(s) 299, 509
PceI AGGCCT 1 cut(s) 741
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 261
PfeI GAWTC 5 cut(s) 37, 505, 523, 589, 1001
PflFI GACNNNGTC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 768
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 3 cut(s) 119, 153, 868
PpsI GAGTC 3 cut(s) 119, 153, 868
Ppu21I YACGTR 2 cut(s) 448, 764
Psp124BI GAGCTC 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 749
Psp6I CCWGG 1 cut(s) 768
PspEI GGTNACC 1 cut(s) 421
PspFI CCCAGC 2 cut(s) 279, 580
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 88, 190
PstNI CAGNNNCTG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 832
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 3 cut(s) 430, 446, 707
RsaNI GTAC 3 cut(s) 429, 445, 706
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 597, 659, 843
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 6 cut(s) 46, 55, 73, 94, 270, 832
Sau96I GGNCC 2 cut(s) 88, 190
SchI GAGTC 3 cut(s) 119, 154, 869
ScrFI CCNGG 2 cut(s) 30, 770
SduI GDGCHC 2 cut(s) 489, 516
SfaNI GCATC 1 cut(s) 636
Sfr274I CTCGAG 2 cut(s) 299, 509
SfuI TTCGAA 2 cut(s) 521, 728
SinI GGWCC 2 cut(s) 88, 190
SlaI CTCGAG 2 cut(s) 299, 509
SmlI CTYRAG 5 cut(s) 299, 434, 509, 709, 967
SmoI CTYRAG 5 cut(s) 299, 434, 509, 709, 967
Sse9I AATT 5 cut(s) 480, 544, 607, 952, 996
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 8 cut(s) 26, 65, 175, 235, 258, 532, 586, 671
SspMI CTAG 1 cut(s) 695
SstI GAGCTC 1 cut(s) 516
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 2 cut(s) 28, 768
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 5 cut(s) 381, 401, 450, 752, 766
TaqII GACCGA 1 cut(s) 118
TasI AATT 5 cut(s) 480, 544, 607, 952, 996
TatI WGTACW 1 cut(s) 705
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 5 cut(s) 37, 505, 523, 589, 1001
Tru1I TTAA 3 cut(s) 597, 659, 843
Tru9I TTAA 3 cut(s) 597, 659, 843
TseFI GTSAC 3 cut(s) 421, 463, 861
Tsp45I GTSAC 3 cut(s) 421, 463, 861
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 88, 190
XapI RAATTY 2 cut(s) 544, 607
XbaI TCTAGA 1 cut(s) 694
XhoI CTCGAG 2 cut(s) 299, 509
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.