Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Reverse (-)

6764727 .. 6766702

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGATTCAACAAGGGAACTAAAGTCGAAGTGTTGAGCAAATCATCGGTTCCATCTGGCGCCTGGCGGTCTGCAGAGATCATATCAGGAAATGGGCATTACTACACTGTCATGTATGATCATAATGATGGTACAGAGAGGGTACCGAGGAAGAGTATGAGGCCTGAGCCTCCTCGTTTACAAGTTCTTGATGCTTGGTGTCCTGGTGACATTCTTGAGGTTTTCCAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTTAGGAAACGGTTGTTTCTTGGTTAGATTACTTGGTTCCTCACTGAAGTTCAAGGTGACTAAATCCGATATTCGGGTTAGACAATCTTGGCAAGATAACGAGTGGATCATGATTGGACAGGGTACATCAAGATTAAGCGCACAGACTTCAACAGGAGAACTAAGGAGAAAGGTGAATCCGAAAGGCGACTACATTTCATCTGAGAGCAAAGACAAGCTTGATGAGTCTGATGTACCTTTGTCAGTAGGTCTAAAGAAACGGACTTACTCTTTGGTTGAACCTCACAATCAAACTAGAGCTTTAGCTGCTTATCCTCCAAGGTTTCGTGAAGAAGTGAAAGAAGAAGAAGAAGATAGAGAGAGTGTTGCTTCTTCTGTTGGTAGTTGTTGCATGGATACTGATGGTCTCAGTGCTGTTTCATTCAATCCCATTGAAACCGGTAACTCTAGTGACACAGAGTCATCGTCTTGTGGCTACGGGAAGGTCAAGAAGTTGGTGGTTCCAAGAAAAGGCTCAGAGGCTGCTGATGTTCATAGGTTAGAGCTGGATGCATACCGAAGCAGTATCGAGAGATTGCACGCATCCGGACCAATCATAACATGGGAACAAGAAACGTGGATTACAAATCTCCGTCTCAAATTGAACATTTCGAATGAGGAACATCTGATGCAGATAAGAAACCTTATCTCTGACGATAACAGTACTATATACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

326

Amino Acids

36.64

Weight (kDa)

7.61

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 58	1.7e-14	Agenet domain
ENT	PF03735	264 - 320	7.1e-11	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	2 cut(s)	59, 142
AccIII	TCCGGA	1 cut(s)	848
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	5 cut(s)	133, 144, 388, 498, 967
AfiI	CCNNNNNNNGG	2 cut(s)	336, 773
AgeI	ACCGGT	1 cut(s)	701
AgsI	TTSAA	7 cut(s)	10, 316, 414, 542, 688, 698, 907
AhdI	GACNNNNNGTC	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	62, 202
AluBI	AGCT	4 cut(s)	481, 563, 569, 808
AluI	AGCT	4 cut(s)	481, 563, 569, 808
Alw26I	GTCTC	2 cut(s)	674, 902
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	785
Aor13HI	TCCGGA	1 cut(s)	848
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	569, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AsiGI	ACCGGT	1 cut(s)	701
Asp718I	GGTACC	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	62, 404
AspS9I	GGNCC	1 cut(s)	851
AsuHPI	GGTGA	3 cut(s)	218, 331, 448
AsuII	TTCGAA	1 cut(s)	914
AvaII	GGWCC	1 cut(s)	851
BanI	GGYRCC	2 cut(s)	59, 142
BbvI	GCAGC	2 cut(s)	556, 772
BccI	CCATC	4 cut(s)	61, 122, 238, 659
BciT130I	CCWGG	2 cut(s)	64, 204
BciVI	GTATCC	1 cut(s)	652
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	674, 902
BfaI	CTAG	2 cut(s)	558, 711
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	2 cut(s)	570, 786
BlsI	GCNGC	2 cut(s)	571, 787
BmcAI	AGTACT	1 cut(s)	967
Bme1390I	CCNGG	2 cut(s)	64, 204
Bme18I	GGWCC	1 cut(s)	851
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	5 cut(s)	51, 61, 144, 301, 765
BmrFI	CCNGG	2 cut(s)	64, 204
BmsI	GCATC	4 cut(s)	181, 802, 854, 921
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	146, 258, 581
BsaWI	WCCGGW	2 cut(s)	701, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 773
Bse118I	RCCGGY	1 cut(s)	701
Bse8I	GATNNNNATC	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	848
BseBI	CCWGG	2 cut(s)	64, 204
BseDI	CCNNGG	3 cut(s)	146, 258, 581
BseGI	GGATG	2 cut(s)	817, 845
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	2 cut(s)	336, 773
BseMII	CTCAG	4 cut(s)	156, 456, 685, 792
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	556, 772
BshFI	GGCC	1 cut(s)	163
BshNI	GGYRCC	2 cut(s)	59, 142
BshTI	ACCGGT	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	702, 849
BslI	CCNNNNNNNGG	2 cut(s)	336, 773
BsmAI	GTCTC	2 cut(s)	674, 902
BsmBI	CGTCTC	1 cut(s)	902
BsnI	GGCC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	674
Bsp119I	TTCGAA	1 cut(s)	914
Bsp13I	TCCGGA	1 cut(s)	848
Bsp143I	GATC	3 cut(s)	78, 118, 369
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	4 cut(s)	157, 457, 684, 791
BspEI	TCCGGA	1 cut(s)	848
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	5 cut(s)	51, 61, 144, 301, 765
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	914
BspT107I	GGYRCC	2 cut(s)	59, 142
BspTNI	GGTCTC	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	146, 258, 581
BssMI	GATC	3 cut(s)	78, 118, 369
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	258, 581
Bst2UI	CCWGG	2 cut(s)	64, 204
Bst4CI	ACNGT	3 cut(s)	109, 275, 965
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	843
BstDEI	CTNAG	5 cut(s)	165, 425, 465, 671, 778
BstF5I	GGATG	2 cut(s)	817, 845
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	62, 404
BstKTI	GATC	3 cut(s)	81, 121, 372
BstMAI	GTCTC	2 cut(s)	674, 902
BstMBI	GATC	3 cut(s)	78, 118, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	2 cut(s)	64, 204
BstSCI	CCNGG	2 cut(s)	62, 202
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	556, 772
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	817, 845
BtsIMutI	CAGTG	3 cut(s)	105, 305, 679
Cac8I	GCNNGC	1 cut(s)	843
CaiI	CAGNNNCTG	1 cut(s)	785
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	2 cut(s)	62, 404
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	851
Csp6I	GTAC	5 cut(s)	132, 143, 387, 497, 966
CspAI	ACCGGT	1 cut(s)	701
CspCI	CAANNNNNGTGG	2 cut(s)	860, 895
CviAII	CATG	4 cut(s)	112, 373, 655, 864
CviJI	RGCY	9 cut(s)	163, 169, 481, 563, 569, 738, 777, 785, 808
CviKI_1	RGCY	9 cut(s)	163, 169, 481, 563, 569, 738, 777, 785, 808
CviQI	GTAC	5 cut(s)	132, 143, 387, 497, 966
DdeI	CTNAG	5 cut(s)	165, 425, 465, 671, 778
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	3 cut(s)	80, 120, 371
DpnII	GATC	3 cut(s)	78, 118, 369
DriI	GACNNNNNGTC	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	258, 581
Eco147I	AGGCCT	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	62, 202
EcoT14I	CCWWGG	2 cut(s)	258, 581
EcoT22I	ATGCAT	1 cut(s)	817
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	258, 581
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	4 cut(s)	115, 376, 658, 867
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	4 cut(s)	111, 372, 654, 863
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	570, 786
FokI	GGATG	2 cut(s)	824, 832
Fsp4HI	GCNGC	2 cut(s)	570, 786
FspBI	CTAG	2 cut(s)	558, 711
GlaI	GCGC	2 cut(s)	61, 403
GluI	GCNGC	2 cut(s)	570, 786
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	2 cut(s)	702, 849
HhaI	GCGC	2 cut(s)	62, 404
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	115, 376, 658, 867
Hin6I	GCGC	2 cut(s)	60, 402
HinP1I	GCGC	2 cut(s)	60, 402
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	4 cut(s)	6, 439, 488, 722
HpaII	CCGG	2 cut(s)	702, 849
HphI	GGTGA	3 cut(s)	218, 331, 448
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	7 cut(s)	331, 444, 466, 493, 781, 930, 955
Hpy188III	TCNNGA	9 cut(s)	87, 188, 215, 373, 393, 590, 751, 832, 849
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	739
HpyCH4III	ACNGT	3 cut(s)	109, 275, 965
HpyCH4IV	ACGT	1 cut(s)	878
HpyCH4V	TGCA	5 cut(s)	74, 654, 815, 841, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	5 cut(s)	165, 425, 465, 671, 778
HpySE526I	ACGT	1 cut(s)	878
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	115, 376, 658, 867
HspAI	GCGC	2 cut(s)	60, 402
KasI	GGCGCC	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	848
KpnI	GGTACC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	78, 118, 369
Lsp1109I	GCAGC	2 cut(s)	556, 772
LweI	GCATC	4 cut(s)	181, 802, 854, 921
MaeI	CTAG	2 cut(s)	558, 711
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	4 cut(s)	206, 319, 704, 713
MalI	GATC	3 cut(s)	80, 120, 371
MboI	GATC	3 cut(s)	78, 118, 369
MboII	GAAGA	8 cut(s)	163, 253, 605, 617, 620, 623, 626, 627
MluCI	AATT	1 cut(s)	902
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	497, 731
Mph1103I	ATGCAT	1 cut(s)	817
MroI	TCCGGA	1 cut(s)	848
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	110, 126
MspI	CCGG	2 cut(s)	702, 849
MspR9I	CCNGG	2 cut(s)	64, 204
MvaI	CCWGG	2 cut(s)	64, 204
MwoI	GCNNNNNNNGC	1 cut(s)	569
NarI	GGCGCC	1 cut(s)	60
NdeII	GATC	3 cut(s)	78, 118, 369
NlaIII	CATG	4 cut(s)	115, 376, 658, 867
NlaIV	GGNNCC	5 cut(s)	51, 61, 144, 301, 765
NmuCI	GTSAC	3 cut(s)	206, 319, 713
NsiI	ATGCAT	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	914
PagI	TCATGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	6, 439
PinAI	ACCGGT	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	571, 787
PleI	GAGTC	2 cut(s)	496, 730
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	2 cut(s)	496, 730
Psp6I	CCWGG	2 cut(s)	62, 202
PspGI	CCWGG	2 cut(s)	62, 202
PspN4I	GGNNCC	5 cut(s)	51, 61, 144, 301, 765
PspPI	GGNCC	1 cut(s)	851
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	785
RsaI	GTAC	5 cut(s)	133, 144, 388, 498, 967
RsaNI	GTAC	5 cut(s)	132, 143, 387, 497, 966
RseI	CAYNNNNRTG	2 cut(s)	110, 126
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	2 cut(s)	570, 786
Sau3AI	GATC	3 cut(s)	78, 118, 369
Sau96I	GGNCC	1 cut(s)	851
ScaI	AGTACT	1 cut(s)	967
SchI	GAGTC	2 cut(s)	497, 731
ScrFI	CCNGG	2 cut(s)	64, 204
SfaNI	GCATC	4 cut(s)	181, 802, 854, 921
SfcI	CTRYAG	1 cut(s)	72
SfoI	GGCGCC	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	110, 126
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	902
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	1 cut(s)	67
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	2 cut(s)	558, 711
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	62, 202
StyI	CCWWGG	2 cut(s)	258, 581
TaaI	ACNGT	3 cut(s)	109, 275, 965
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	3 cut(s)	27, 831, 914
TasI	AATT	1 cut(s)	902
TatI	WGTACW	1 cut(s)	965
TfiI	GAWTC	2 cut(s)	6, 439
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	3 cut(s)	112, 312, 679
TseFI	GTSAC	3 cut(s)	206, 319, 713
TseI	GCWGC	2 cut(s)	569, 785
Tsp45I	GTSAC	3 cut(s)	206, 319, 713
TspDTI	ATGAA	3 cut(s)	450, 672, 785
TspGWI	ACGGA	2 cut(s)	538, 884
TspRI	CASTG	3 cut(s)	112, 312, 679
VpaK11BI	GGWCC	1 cut(s)	851
XcmI	CCANNNNNNNNNTGG	2 cut(s)	60, 861
XspI	CTAG	2 cut(s)	558, 711
ZrmI	AGTACT	1 cut(s)	967
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.