Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Reverse (-)

123829 .. 124338

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgctgggtggaaaagaaatacgtgcttctcttaacaacagaacaactgtattgtctgaggttgatttagaaaagaggaacccaagtggtaatgttgggtgtttatttgctgttaacttaaagtcggaagatgtcgatactgttacgtgctcagtaggtagttgtagcatcggtagcaatgatccctataagtcacctcatcatgtttcttctggatctactggagattttgaagaccagttttgtgatgctcaatctgtttgtcagttgggatatgaggaaggaaactgtgtccttcccacaaagaaagaattggctgctgagatccataggttagagctgcaagcctaccgttgcacgatagaggcattgcatgcatcaggacctttaagctgggagcaagaagaattggtgacaaatcttcgtctttcgcttcatatatcaaatgatgaacatttaatggagcttagaaacttaatttctgcagataacaacattcaaattagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

169

Amino Acids

18.59

Weight (kDa)

4.89

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	176, 223, 319
AgsI	TTSAA	2 cut(s)	233, 500
AluBI	AGCT	3 cut(s)	340, 393, 466
AluI	AGCT	3 cut(s)	340, 393, 466
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	176, 223, 319
ApeKI	GCWGC	2 cut(s)	317, 340
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	186, 424
AvaII	GGWCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	304, 327
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	2 cut(s)	318, 341
BlsI	GCNGC	2 cut(s)	319, 342
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	3 cut(s)	177, 238, 386
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	243
BsaAI	YACGTR	2 cut(s)	23, 147
Bse1I	ACTGG	2 cut(s)	226, 238
Bse3DI	GCAATG	2 cut(s)	184, 368
BseMI	GCAATG	2 cut(s)	184, 368
BseMII	CTCAG	3 cut(s)	48, 165, 312
BseNI	ACTGG	2 cut(s)	226, 238
BseXI	GCAGC	2 cut(s)	304, 327
BseYI	CCCAGC	2 cut(s)	4, 393
BsiHKAI	GWGCWC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	181, 215, 324
BspCNI	CTCAG	3 cut(s)	49, 164, 313
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	3 cut(s)	176, 223, 319
BsrDI	GCAATG	2 cut(s)	184, 368
BsrI	ACTGG	2 cut(s)	226, 238
BssMI	GATC	3 cut(s)	181, 215, 324
Bst4CI	ACNGT	4 cut(s)	49, 142, 290, 353
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	2 cut(s)	23, 147
BstC8I	GCNNGC	2 cut(s)	345, 375
BstDEI	CTNAG	4 cut(s)	57, 151, 321, 467
BstKTI	GATC	3 cut(s)	184, 218, 327
BstMBI	GATC	3 cut(s)	181, 215, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 374
BstNSI	RCATGY	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	304, 327
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	215, 324
BstYI	RGATCY	2 cut(s)	215, 324
Cac8I	GCNNGC	2 cut(s)	345, 375
Cfr13I	GGNCC	1 cut(s)	383
CviAII	CATG	2 cut(s)	203, 374
CviJI	RGCY	5 cut(s)	317, 340, 347, 393, 466
CviKI_1	RGCY	5 cut(s)	317, 340, 347, 393, 466
DdeI	CTNAG	4 cut(s)	57, 151, 321, 467
DpnI	GATC	3 cut(s)	183, 217, 326
DpnII	GATC	3 cut(s)	181, 215, 324
Eco47I	GGWCC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	383
EcoT22I	ATGCAT	1 cut(s)	379
FaeI	CATG	2 cut(s)	206, 377
FaiI	YATR	7 cut(s)	189, 204, 276, 330, 375, 438, 440
FatI	CATG	2 cut(s)	202, 373
Fnu4HI	GCNGC	2 cut(s)	318, 341
Fsp4HI	GCNGC	2 cut(s)	318, 341
GluI	GCNGC	2 cut(s)	318, 341
GsaI	CCCAGC	2 cut(s)	8, 397
GsuI	CTGGAG	1 cut(s)	243
Hin1II	CATG	2 cut(s)	206, 377
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HpaI	GTTAAC	1 cut(s)	115
HphI	GGTGA	2 cut(s)	186, 424
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	58, 127
Hpy188III	TCNNGA	2 cut(s)	213, 381
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	275, 305
HpyCH4III	ACNGT	4 cut(s)	49, 142, 290, 353
HpyCH4IV	ACGT	2 cut(s)	22, 146
HpyCH4V	TGCA	5 cut(s)	343, 357, 373, 377, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 374
HpyF3I	CTNAG	4 cut(s)	57, 151, 321, 467
HpySE526I	ACGT	2 cut(s)	22, 146
Hsp92II	CATG	2 cut(s)	206, 377
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	181, 215, 324
LmnI	GCTCC	2 cut(s)	397, 463
LpnPI	CCDG	5 cut(s)	198, 207, 251, 366, 379
Lsp1109I	GCAGC	2 cut(s)	304, 327
LweI	GCATC	3 cut(s)	177, 238, 386
MaeII	ACGT	2 cut(s)	22, 146
MaeIII	GTNAC	3 cut(s)	142, 192, 412
MalI	GATC	3 cut(s)	183, 217, 326
MboI	GATC	3 cut(s)	181, 215, 324
MboII	GAAGA	5 cut(s)	140, 201, 245, 413, 416
MflI	RGATCY	2 cut(s)	215, 324
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	4 cut(s)	311, 407, 477, 501
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	52, 69, 207, 271, 358
Mph1103I	ATGCAT	1 cut(s)	379
MseI	TTAA	6 cut(s)	33, 114, 119, 389, 458, 476
MwoI	GCNNNNNNNGC	2 cut(s)	174, 374
NdeII	GATC	3 cut(s)	181, 215, 324
NlaIII	CATG	2 cut(s)	206, 377
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	192, 412
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	319, 342
Ppu21I	YACGTR	2 cut(s)	23, 147
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
PspFI	CCCAGC	2 cut(s)	4, 393
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	383
PspPPI	RGGWCCY	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	215, 324
SaqAI	TTAA	6 cut(s)	33, 114, 119, 389, 458, 476
SatI	GCNGC	2 cut(s)	318, 341
Sau3AI	GATC	3 cut(s)	181, 215, 324
Sau96I	GGNCC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	3 cut(s)	177, 238, 386
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	383
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	4 cut(s)	311, 407, 477, 501
TaaI	ACNGT	4 cut(s)	49, 142, 290, 353
TaiI	ACGT	2 cut(s)	25, 149
TaqI	TCGA	1 cut(s)	135
TasI	AATT	4 cut(s)	311, 407, 477, 501
Tru1I	TTAA	6 cut(s)	33, 114, 119, 389, 458, 476
Tru9I	TTAA	6 cut(s)	33, 114, 119, 389, 458, 476
TseFI	GTSAC	2 cut(s)	192, 412
TseI	GCWGC	2 cut(s)	317, 340
Tsp45I	GTSAC	2 cut(s)	192, 412
TspDTI	ATGAA	2 cut(s)	425, 465
VpaK11BI	GGWCC	1 cut(s)	383
XceI	RCATGY	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.