Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Forward (+)

3247640 .. 3249077

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGATTCAAAAAAGGGAGCAATGTGGAAGTCCTGAGGAAGAAGGAGGTGCCTTCAGGATCTTGGTGCTGTGCCAAGATCATCTGCCGTGACGGCCACAAGTATACTGTTAGATATGATGGAGTAGAGGCTGCTAATGATGAGACCATTGTGGAGAGGGTACACAGAACTGCAATTAGGCCTTGCCCTCCTCCACTGGAAGTTACAGAGAATTGCGTTCCTGGTGATGTTGTTGAGGTATTCGACAATTTTTCATGGAAAATGGCAACCATTTCTGATGTTTTAGGGAGCAAGTACTTTTTGGTCAGGATAGTTGGATCCTGCCAGGAATATAAAGTTGGGAAACTGGAAGTTCGAGTCAGACAGTTCTGGCAAGATGACAAATGGGTTGTGGTTGGAAAGGGTTCAAGCCAATATGAGAATGGAAAGCATGGTGCAATTTCAACTCTAAAGTACAGCCAAAAATCATGCCTTGAAGCTCAGAAAGTCAATTTCCAGAAATCCCACACTGCATCCTCTCAGAATCTGAAGAGAGGATCATCCTACTTGTATTCTCAAGATGAAGCACATGCTGGAGGTACTGAGAAGTTTCGAGTAGTTGAGAAAGAAGGCAGGTGTCACAGAGTCATTGCTAGCAACTTATCTAGATTAGCTGAACAGGTAGATGTTGCTTTGCCAAGTCAGATGCTGTGTGGAAAAGAAATACATGCTTCTCTTAACAACAGAACAACTGTGTTGTCTGAGGTTGATTTAGAAAAGAGGAAACCAAGTGGTAATGTTGGGTGTTTATTTGCTGTTAACTTAAAGTCGGAAGATGTCGATACTGGTACGTGCTCGGTAGGTAGTTGTAGCATCGGTAGCAATGATCCCTATAAGTCACCTCTTCATGTTTCTTCTGGATCTACTGGAGATTTTGAAGTTCAGTTTTGTGACACTGAATCTGTTTGTCAGTTGGGATATGAGGAAGGAAACTGTGTCCTTCCCAGAAAGAAAGAATTGGCTGCTGAGATCCATAGGTTAGAGCTGCAAGCCTACCGTTGCACGATAGAGGCATTGCACGCATCAGGACCTTTAAGCTGGGAGCAAGAAGAATTGGTGACAAATCTTCGTCTTTCGCTTCATATATCAAATGATGAACACTTAATGGAGCTTAGAAACTTAATTTCTGCAGATAACAACATTCAAATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

398

Amino Acids

44.29

Weight (kDa)

6.65

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 64	2.4e-16	Agenet domain
ENT	PF03735	335 - 395	1.9e-13	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	104
AclWI	GGATC	7 cut(s)	67, 312, 325, 544, 860, 907, 1003
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	39, 548
AfaI	GTAC	5 cut(s)	162, 296, 455, 580, 829
AgsI	TTSAA	6 cut(s)	10, 408, 444, 476, 917, 1184
AjnI	CCWGG	2 cut(s)	220, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	5 cut(s)	479, 653, 1024, 1077, 1150
AluI	AGCT	5 cut(s)	479, 653, 1024, 1077, 1150
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	7 cut(s)	67, 312, 325, 544, 860, 907, 1003
AlwNI	CAGNNNCTG	2 cut(s)	526, 688
AoxI	GGCC	2 cut(s)	94, 179
ApeKI	GCWGC	3 cut(s)	131, 1001, 1024
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	1067
AsuHPI	GGTGA	3 cut(s)	236, 870, 1108
AsuNHI	GCTAGC	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	1067
AxyI	CCTNAGG	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	836
BbvI	GCAGC	3 cut(s)	118, 988, 1011
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	72, 109
BciT130I	CCWGG	2 cut(s)	222, 326
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	633, 645
BfmI	CTRYAG	1 cut(s)	1167
BfuAI	ACCTGC	1 cut(s)	603
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	132, 1002, 1025
BlsI	GCNGC	3 cut(s)	133, 1003, 1026
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	222, 326
Bme18I	GGWCC	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	1067
BmiI	GGNNCC	2 cut(s)	51, 319
BmrFI	CCNGG	2 cut(s)	222, 326
BmsI	GCATC	4 cut(s)	521, 675, 861, 1070
BmtI	GCTAGC	1 cut(s)	636
BpmI	CTGGAG	2 cut(s)	594, 927
BpuEI	CTTGAG	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	831
BsaI	GGTCTC	1 cut(s)	137
Bse1I	ACTGG	4 cut(s)	201, 351, 829, 910
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	4 cut(s)	28, 627, 868, 1052
BseBI	CCWGG	2 cut(s)	222, 326
BseGI	GGATG	2 cut(s)	512, 539
BseMI	GCAATG	4 cut(s)	28, 627, 868, 1052
BseMII	CTCAG	6 cut(s)	26, 494, 533, 573, 732, 996
BseNI	ACTGG	4 cut(s)	201, 351, 829, 910
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	118, 988, 1011
BseYI	CCCAGC	1 cut(s)	1077
BshFI	GGCC	2 cut(s)	96, 181
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	836
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	96, 181
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
BspANI	GGCC	2 cut(s)	96, 181
BspCNI	CTCAG	6 cut(s)	27, 493, 532, 574, 733, 997
BspLI	GGNNCC	2 cut(s)	51, 319
BspMAI	CTGCAG	1 cut(s)	1171
BspMI	ACCTGC	1 cut(s)	603
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	7 cut(s)	67, 312, 325, 544, 860, 907, 1003
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	4 cut(s)	28, 627, 868, 1052
BsrI	ACTGG	4 cut(s)	201, 351, 829, 910
BssMI	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
BssNAI	GTATAC	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	222, 326
Bst4CI	ACNGT	5 cut(s)	109, 366, 733, 974, 1037
Bst6I	CTCTTC	2 cut(s)	524, 888
BstBAI	YACGTR	1 cut(s)	831
BstC8I	GCNNGC	3 cut(s)	634, 1029, 1059
BstDEI	CTNAG	7 cut(s)	35, 480, 519, 582, 741, 1005, 1151
BstF5I	GGATG	2 cut(s)	512, 539
BstKTI	GATC	7 cut(s)	62, 81, 320, 539, 868, 902, 1011
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 858, 1058
BstNI	CCWGG	2 cut(s)	222, 326
BstNSI	RCATGY	2 cut(s)	572, 710
BstSCI	CCNGG	2 cut(s)	220, 324
BstSFI	CTRYAG	1 cut(s)	1167
BstV1I	GCAGC	3 cut(s)	118, 988, 1011
BstX2I	RGATCY	4 cut(s)	59, 317, 899, 1008
BstYI	RGATCY	4 cut(s)	59, 317, 899, 1008
BstZ17I	GTATAC	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	96, 181
BtsCI	GGATG	2 cut(s)	512, 539
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	194, 507, 933
BveI	ACCTGC	1 cut(s)	603
Cac8I	GCNNGC	3 cut(s)	634, 1029, 1059
CaiI	CAGNNNCTG	2 cut(s)	526, 688
Cfr13I	GGNCC	1 cut(s)	1067
Csp6I	GTAC	5 cut(s)	161, 295, 454, 579, 828
CviAII	CATG	6 cut(s)	255, 431, 468, 569, 707, 887
CviQI	GTAC	5 cut(s)	161, 295, 454, 579, 828
DdeI	CTNAG	7 cut(s)	35, 480, 519, 582, 741, 1005, 1151
DpnI	GATC	7 cut(s)	61, 80, 319, 538, 867, 901, 1010
DpnII	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	524, 888
EarI	CTCTTC	2 cut(s)	524, 888
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	39, 548
Eco81I	CCTNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoRII	CCWGG	2 cut(s)	220, 324
FaeI	CATG	6 cut(s)	258, 434, 471, 572, 710, 890
FatI	CATG	6 cut(s)	254, 430, 467, 568, 706, 886
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	132, 1002, 1025
FokI	GGATG	2 cut(s)	499, 526
Fsp4HI	GCNGC	3 cut(s)	132, 1002, 1025
FspBI	CTAG	2 cut(s)	633, 645
GluI	GCNGC	3 cut(s)	132, 1002, 1025
GsaI	CCCAGC	1 cut(s)	1081
GsuI	CTGGAG	2 cut(s)	594, 927
HaeIII	GGCC	2 cut(s)	96, 181
Hin1II	CATG	6 cut(s)	258, 434, 471, 572, 710, 890
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	5 cut(s)	6, 357, 523, 624, 938
HpaI	GTTAAC	1 cut(s)	799
HphI	GGTGA	3 cut(s)	236, 870, 1108
Hpy166II	GTNNAC	3 cut(s)	105, 163, 799
Hpy188I	TCNGA	8 cut(s)	277, 362, 483, 522, 528, 684, 742, 811
Hpy188III	TCNNGA	8 cut(s)	34, 57, 307, 496, 557, 645, 897, 1065
Hpy8I	GTNNAC	3 cut(s)	105, 163, 799
HpyAV	CCTTC	5 cut(s)	37, 63, 602, 959, 989
HpyCH4III	ACNGT	5 cut(s)	109, 366, 733, 974, 1037
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	7 cut(s)	173, 437, 512, 1027, 1041, 1057, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 858, 1058
HpyF3I	CTNAG	7 cut(s)	35, 480, 519, 582, 741, 1005, 1151
HpySE526I	ACGT	1 cut(s)	830
Hsp92II	CATG	6 cut(s)	258, 434, 471, 572, 710, 890
KspAI	GTTAAC	1 cut(s)	799
Kzo9I	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
LmnI	GCTCC	4 cut(s)	18, 288, 1081, 1147
Lsp1109I	GCAGC	3 cut(s)	118, 988, 1011
LweI	GCATC	4 cut(s)	521, 675, 861, 1070
MaeI	CTAG	2 cut(s)	633, 645
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	6 cut(s)	89, 202, 617, 876, 929, 1096
MalI	GATC	7 cut(s)	61, 80, 319, 538, 867, 901, 1010
MboI	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
MboII	GAAGA	7 cut(s)	52, 541, 824, 875, 885, 1097, 1100
MflI	RGATCY	4 cut(s)	59, 317, 899, 1008
MhlI	GDGCHC	1 cut(s)	836
MluCI	AATT	9 cut(s)	174, 211, 247, 438, 490, 995, 1091, 1161, 1185
MlyI	GAGTC	2 cut(s)	366, 633
MmeI	TCCRAC	3 cut(s)	295, 376, 789
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	6 cut(s)	717, 798, 803, 1073, 1142, 1160
MspR9I	CCNGG	2 cut(s)	222, 326
MvaI	CCWGG	2 cut(s)	222, 326
MwoI	GCNNNNNNNGC	3 cut(s)	93, 858, 1058
NdeII	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	6 cut(s)	258, 434, 471, 572, 710, 890
NlaIV	GGNNCC	2 cut(s)	51, 319
NmuCI	GTSAC	5 cut(s)	89, 617, 876, 929, 1096
NspI	RCATGY	2 cut(s)	572, 710
PaqCI	CACCTGC	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	6, 523, 938
PkrI	GCNGC	3 cut(s)	133, 1003, 1026
PleI	GAGTC	2 cut(s)	365, 632
PpsI	GAGTC	2 cut(s)	365, 632
Ppu21I	YACGTR	1 cut(s)	831
PpuMI	RGGWCCY	1 cut(s)	1067
Psp5II	RGGWCCY	1 cut(s)	1067
Psp6I	CCWGG	2 cut(s)	220, 324
PspFI	CCCAGC	1 cut(s)	1077
PspGI	CCWGG	2 cut(s)	220, 324
PspN4I	GGNNCC	2 cut(s)	51, 319
PspPI	GGNCC	1 cut(s)	1067
PspPPI	RGGWCCY	1 cut(s)	1067
PstI	CTGCAG	1 cut(s)	1171
PstNI	CAGNNNCTG	2 cut(s)	526, 688
PsuI	RGATCY	4 cut(s)	59, 317, 899, 1008
RsaI	GTAC	5 cut(s)	162, 296, 455, 580, 829
RsaNI	GTAC	5 cut(s)	161, 295, 454, 579, 828
SaqAI	TTAA	6 cut(s)	717, 798, 803, 1073, 1142, 1160
SatI	GCNGC	3 cut(s)	132, 1002, 1025
Sau3AI	GATC	7 cut(s)	59, 78, 317, 536, 865, 899, 1008
Sau96I	GGNCC	1 cut(s)	1067
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	2 cut(s)	366, 633
ScrFI	CCNGG	2 cut(s)	222, 326
SduI	GDGCHC	1 cut(s)	836
SfaNI	GCATC	4 cut(s)	521, 675, 861, 1070
SfcI	CTRYAG	1 cut(s)	1167
SinI	GGWCC	1 cut(s)	1067
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	9 cut(s)	174, 211, 247, 438, 490, 995, 1091, 1161, 1185
SseBI	AGGCCT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	633, 645
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	220, 324
TaaI	ACNGT	5 cut(s)	109, 366, 733, 974, 1037
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	4 cut(s)	243, 355, 592, 819
TasI	AATT	9 cut(s)	174, 211, 247, 438, 490, 995, 1091, 1161, 1185
TatI	WGTACW	2 cut(s)	294, 453
TfiI	GAWTC	3 cut(s)	6, 523, 938
Tru1I	TTAA	6 cut(s)	717, 798, 803, 1073, 1142, 1160
Tru9I	TTAA	6 cut(s)	717, 798, 803, 1073, 1142, 1160
TscAI	CASTG	3 cut(s)	201, 514, 940
TseFI	GTSAC	5 cut(s)	89, 617, 876, 929, 1096
TseI	GCWGC	3 cut(s)	131, 1001, 1024
Tsp45I	GTSAC	5 cut(s)	89, 617, 876, 929, 1096
TspDTI	ATGAA	5 cut(s)	243, 576, 875, 1109, 1149
TspRI	CASTG	3 cut(s)	201, 514, 940
VpaK11BI	GGWCC	1 cut(s)	1067
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	2 cut(s)	572, 710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	2 cut(s)	633, 645
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.