Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Forward (+)

2061901 .. 2064473

Gene Structure 2573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03900.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGATTCAAAAAAGGGAGCAATGTGGAAGTCCTGAGGAAAAAGGAGGTGCCTTCAGGATCTTGGTGGTGTGCCAAGATCATCTGCCGTGACGGCCACAAGTATACTGTTAGATATGGAGTAGAGGTTGCTAATGATGAGACTGTTGTGGAGAGGGTACACAGAACAGCAATCAGGCCTTGCCCTCCTCCAGTGGAAGTTACAGAGAGTTGGGTTCCTGGTGATATTGTGGAGGTTTTTGACAATTTCTCATGGAAAATGGCAACCATTTCTGAGGTTTTAGGAAACAAGTACTTTTTGGTCAGGATAGTTGGATCCTGCCGGGAATATAAGGTTGGGAAACTGGAAGTTCGAGTTAGACAGTTCTGGCAAGATGACAAATGGGTTGTGGTTGGAAAGGGTTCAAGTCAATATGATAATGGAAAGCAAGGTGCAATCTTGAGTCTAAAAGCTCAGAAAGTCAGTTTCAAGAAGTCCCACACTGCATCCTCTCAGAATCTGAAGAGAGGATCATCACACTTGCAAGATGAATCATATGGTGGAGCTACTGAGAAGTTTCGAGCAGTTGAGAGAGAAGGCAGGTGTCAAAGAGTCATTGCTAGCAACTTATCTAGGTTAGCTGAACATGTAGATGTTGCTTTGCCAAGTCGGATGCTGGGTGGAAAAGAAATATGTGCTTCTCTGAACAACAGAACAACTGTATTGTCTGAGGTTGATTTAGTAAAGAGGAAACCGAGTGGTAATGCTGGGTGTTTGTTTTCTGTTAACTTGAAGTCAGATGATGTTGATACTGTTACGTGCTCAGTAGGTAGTTGTAGCATCGGTAGCAATGATCCCTATAAGTCACCTCATCATGTTTCTTCTGGTTCTACTGGAGATTTCAAAGACCAGTTTTGTGATGCTGAATCTGTTTGTCACTTGGGATATGAGGAAGGAAACTCTGTCCTTCCCACAAAGAAAGAATTGGCAGCTGAGATCCATAGGTTAGAGCTGCAAGCCTACCGTTGCACGATAGAGGCATTGCATGCATCAGGACCTTTAAGCTGGGAACAAGAAGAATTGGTGACAAATCTTCGTCTTTCGCTTCATATATCGAATGATGAACATTTAATGGAGCTTAGAAACTTAATTTCTGCAGATAACAACATTCATATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

387

Amino Acids

43.08

Weight (kDa)

8.19

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 63	4.3e-16	Agenet domain
ENT	PF03735	324 - 383	2.6e-13	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	570
Acc36I	ACCTGC	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	104
AclWI	GGATC	6 cut(s)	67, 309, 322, 517, 827, 970
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	39, 521
AfaI	GTAC	2 cut(s)	159, 293
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	5 cut(s)	10, 405, 469, 772, 883
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	7 cut(s)	452, 545, 620, 971, 991, 1044, 1117
AluI	AGCT	7 cut(s)	452, 545, 620, 971, 991, 1044, 1117
Alw21I	GWGCWC	1 cut(s)	803
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	6 cut(s)	67, 309, 322, 517, 827, 970
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	2 cut(s)	94, 176
ApeKI	GCWGC	2 cut(s)	968, 991
Asp700I	GAANNNNTTC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	1034
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	3 cut(s)	233, 837, 1075
AsuNHI	GCTAGC	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	1034
AxyI	CCTNAGG	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	803
BbvI	GCAGC	2 cut(s)	978, 980
BceAI	ACGGC	2 cut(s)	72, 109
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	600, 612
BfmI	CTRYAG	1 cut(s)	1134
BfuAI	ACCTGC	1 cut(s)	570
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	969, 992
BlsI	GCNGC	2 cut(s)	970, 993
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	219, 323
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	1 cut(s)	1034
BmiI	GGNNCC	3 cut(s)	51, 216, 316
BmrFI	CCNGG	2 cut(s)	219, 323
BmsI	GCATC	5 cut(s)	494, 642, 828, 889, 1037
BmtI	GCTAGC	1 cut(s)	603
BpmI	CTGGAG	2 cut(s)	174, 894
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	798
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	4 cut(s)	191, 348, 877, 889
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	4 cut(s)	28, 594, 835, 1019
BseBI	CCWGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	485, 657
BseMI	GCAATG	4 cut(s)	28, 594, 835, 1019
BseMII	CTCAG	8 cut(s)	26, 264, 467, 506, 540, 699, 816, 963
BseNI	ACTGG	4 cut(s)	191, 348, 877, 889
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	978, 980
BseYI	CCCAGC	3 cut(s)	655, 746, 1044
BshFI	GGCC	2 cut(s)	96, 178
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	96, 178
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp143I	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
BspANI	GGCC	2 cut(s)	96, 178
BspCNI	CTCAG	8 cut(s)	27, 265, 466, 505, 541, 700, 815, 964
BspLI	GGNNCC	3 cut(s)	51, 216, 316
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	1 cut(s)	570
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	6 cut(s)	67, 309, 322, 517, 827, 970
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	4 cut(s)	28, 594, 835, 1019
BsrI	ACTGG	4 cut(s)	191, 348, 877, 889
BssMI	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
BssNAI	GTATAC	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	6 cut(s)	109, 145, 363, 700, 793, 1004
Bst6I	CTCTTC	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstBAI	YACGTR	1 cut(s)	798
BstC8I	GCNNGC	3 cut(s)	601, 996, 1026
BstDEI	CTNAG	9 cut(s)	35, 273, 453, 492, 549, 708, 802, 972, 1118
BstF5I	GGATG	2 cut(s)	485, 657
BstKTI	GATC	6 cut(s)	62, 81, 317, 512, 835, 978
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 825, 1025
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	2 cut(s)	629, 1028
BstSCI	CCNGG	2 cut(s)	217, 321
BstSFI	CTRYAG	1 cut(s)	1134
BstV1I	GCAGC	2 cut(s)	978, 980
BstX2I	RGATCY	3 cut(s)	59, 314, 975
BstYI	RGATCY	3 cut(s)	59, 314, 975
BstZ17I	GTATAC	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	96, 178
BtsCI	GGATG	2 cut(s)	485, 657
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	198, 480
BveI	ACCTGC	1 cut(s)	570
Cac8I	GCNNGC	3 cut(s)	601, 996, 1026
CaiI	CAGNNNCTG	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	1034
Csp6I	GTAC	2 cut(s)	158, 292
CviAII	CATG	4 cut(s)	252, 626, 854, 1025
CviQI	GTAC	2 cut(s)	158, 292
DdeI	CTNAG	9 cut(s)	35, 273, 453, 492, 549, 708, 802, 972, 1118
DpnI	GATC	6 cut(s)	61, 80, 316, 511, 834, 977
DpnII	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	1034
Eco57I	CTGAAG	2 cut(s)	39, 521
Eco81I	CCTNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	1030
FaeI	CATG	4 cut(s)	255, 629, 857, 1028
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	4 cut(s)	251, 625, 853, 1024
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	969, 992
FokI	GGATG	2 cut(s)	472, 664
Fsp4HI	GCNGC	2 cut(s)	969, 992
FspBI	CTAG	2 cut(s)	600, 612
GluI	GCNGC	2 cut(s)	969, 992
GsaI	CCCAGC	3 cut(s)	659, 750, 1048
GsuI	CTGGAG	2 cut(s)	174, 894
HaeIII	GGCC	2 cut(s)	96, 178
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	4 cut(s)	255, 629, 857, 1028
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	6 cut(s)	6, 442, 496, 530, 591, 905
HpaI	GTTAAC	1 cut(s)	766
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	3 cut(s)	233, 837, 1075
Hpy166II	GTNNAC	3 cut(s)	105, 160, 766
Hpy188I	TCNGA	8 cut(s)	274, 456, 495, 501, 651, 684, 709, 778
Hpy188III	TCNNGA	6 cut(s)	34, 57, 304, 439, 469, 1032
Hpy8I	GTNNAC	3 cut(s)	105, 160, 766
HpyAV	CCTTC	4 cut(s)	63, 569, 926, 956
HpyCH4III	ACNGT	6 cut(s)	109, 145, 363, 700, 793, 1004
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	8 cut(s)	434, 485, 523, 994, 1008, 1024, 1028, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 825, 1025
HpyF3I	CTNAG	9 cut(s)	35, 273, 453, 492, 549, 708, 802, 972, 1118
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	4 cut(s)	255, 629, 857, 1028
KspAI	GTTAAC	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
LmnI	GCTCC	3 cut(s)	18, 542, 1114
Lsp1109I	GCAGC	2 cut(s)	978, 980
LweI	GCATC	5 cut(s)	494, 642, 828, 889, 1037
MaeI	CTAG	2 cut(s)	600, 612
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	6 cut(s)	89, 199, 793, 843, 914, 1063
MalI	GATC	6 cut(s)	61, 80, 316, 511, 834, 977
MboI	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
MboII	GAAGA	4 cut(s)	514, 852, 1064, 1067
MflI	RGATCY	3 cut(s)	59, 314, 975
MhlI	GDGCHC	1 cut(s)	803
MluCI	AATT	4 cut(s)	244, 962, 1058, 1128
MlyI	GAGTC	2 cut(s)	451, 600
MmeI	TCCRAC	3 cut(s)	292, 373, 629
Mph1103I	ATGCAT	1 cut(s)	1030
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	4 cut(s)	765, 1040, 1109, 1127
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	219, 323
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	93, 825, 1025
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	4 cut(s)	255, 629, 857, 1028
NlaIV	GGNNCC	3 cut(s)	51, 216, 316
NmuCI	GTSAC	4 cut(s)	89, 843, 914, 1063
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	2 cut(s)	629, 1028
PaeI	GCATGC	1 cut(s)	1028
PaqCI	CACCTGC	1 cut(s)	570
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	6, 496, 530, 905
PkrI	GCNGC	2 cut(s)	970, 993
PleI	GAGTC	2 cut(s)	450, 599
PpsI	GAGTC	2 cut(s)	450, 599
Ppu21I	YACGTR	1 cut(s)	798
PpuMI	RGGWCCY	1 cut(s)	1034
PscI	ACATGT	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	3 cut(s)	655, 746, 1044
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	51, 216, 316
PspPI	GGNCC	1 cut(s)	1034
PspPPI	RGGWCCY	1 cut(s)	1034
PstI	CTGCAG	1 cut(s)	1138
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	3 cut(s)	59, 314, 975
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	2 cut(s)	159, 293
RsaNI	GTAC	2 cut(s)	158, 292
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	765, 1040, 1109, 1127
SatI	GCNGC	2 cut(s)	969, 992
Sau3AI	GATC	6 cut(s)	59, 78, 314, 509, 832, 975
Sau96I	GGNCC	1 cut(s)	1034
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	2 cut(s)	451, 600
ScrFI	CCNGG	2 cut(s)	219, 323
SduI	GDGCHC	1 cut(s)	803
SfaNI	GCATC	5 cut(s)	494, 642, 828, 889, 1037
SfcI	CTRYAG	1 cut(s)	1134
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SphI	GCATGC	1 cut(s)	1028
Sse9I	AATT	4 cut(s)	244, 962, 1058, 1128
SseBI	AGGCCT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	600, 612
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	217, 321
TaaI	ACNGT	6 cut(s)	109, 145, 363, 700, 793, 1004
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	3 cut(s)	352, 559, 1094
TasI	AATT	4 cut(s)	244, 962, 1058, 1128
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	4 cut(s)	6, 496, 530, 905
Tru1I	TTAA	4 cut(s)	765, 1040, 1109, 1127
Tru9I	TTAA	4 cut(s)	765, 1040, 1109, 1127
TscAI	CASTG	2 cut(s)	198, 487
TseFI	GTSAC	4 cut(s)	89, 843, 914, 1063
TseI	GCWGC	2 cut(s)	968, 991
Tsp45I	GTSAC	4 cut(s)	89, 843, 914, 1063
TspDTI	ATGAA	4 cut(s)	543, 1076, 1116, 1139
TspRI	CASTG	2 cut(s)	198, 487
VpaK11BI	GGWCC	1 cut(s)	1034
XceI	RCATGY	2 cut(s)	629, 1028
XmiI	GTMKAC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	600, 612
ZrmI	AGTACT	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.