Rorug01G0489700

Tudor-like domain present in plant sequences.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
57509068 .. 57510090
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0489700.1

Sequence Viewer

Length: 1023 bp
ATGCCCATTGGGGTTCGCCAACAGAAGAGGGCGAAGCAAGGCTCTCAGACGGTGACCGTGGCCGCTGCTGGGGAGGTGCCGACGAGCGAGTTGGACTCCTTTGCCTCGTACGCCGAGTTTTTGACCGATCCCGAGCGGGAGTTTCTCTTCCACCTTTGTGAGCAGCTCTGGTTCGGCAGGATGGACGGGACGGTGCATCCGACGGCCCTGCAACAATTGTCATTTAGCTCGACCTTTGGGCACTTATCGGTCGGGCTGCATGAGCTATTTCTGGAGGCGTCGAAGTCATCGCCTATTGAGCCGCAGCTGAGGGACGAAGTCGAGGGTCTCCGTAAGGAGCTAGGGGAGATGTCCAAGAAGCTGGCGGACACCGAGGGCTGCCTTTCAAAGGCAGAGCTGGACCTGGTGGATGTTCGGGGCAAGCTGGATGTCGCCATCGACCGAGATGTTGAGCGGAACAACCGGGTAGCGCAGCTAGAGAAAGACATGGCCCTGCTGCAGGAGCAGGTAGTGGCAAAGGGTAGGCGTGCCGAGGTCCTTCAGCAAGAGGTCGCCACCAAGGCTGCGGAGTTAAAGCGGTTGGAAGGCGAGGTCACCCGACTGAGAGTTGAGAGGGACCAGGCAGATGCCGCTGCTGTAGAGGTCTACAAGCGGTCGCCTGAGTTCAAGCATGCTCTAACAGAGGCAGCAAAGGCTGGTGCCGCTGCTAACTTCAAAATGTTGGACCAGAAGGGCGTCATCAACTGGGACAAAGCGCCCCGGCCAACCGGGACGTCGAGCGAGCCTCAGGTATCTGTAGCCGGGCCGGCCGCCAAAGAATCGGAGGGTGTACGCTCTAGCAGTGGTGAGAGCGGTCAACGTGCGGTGGACGGGTCTCAGCAGACGCCGATGCCTACTCCCTCAGACGTGTCCCGTGCCGACTTCCTGGCGGCTCACACAAGGGCGGATGGCACCATAGTAACGCCGAGCCCCACCGCTCCTGGGTCTGACCAGACAAGCCGTACAGTCGTCCAACCCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

340

Amino Acids

36.82

Weight (kDa)

5.37

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 776
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 76, 698, 950
AccBSI CCGCTC 4 cut(s) 136, 454, 852, 977
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 1019
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 3 cut(s) 60, 761, 807
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 4 cut(s) 278, 735, 773, 884
AfaI GTAC 3 cut(s) 110, 831, 1003
AfiI CCNNNNNNNGG 4 cut(s) 69, 388, 499, 981
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 3 cut(s) 387, 667, 715
AjiI CACGTC 1 cut(s) 907
AjnI CCWGG 4 cut(s) 402, 618, 924, 979
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 9 cut(s) 166, 228, 265, 307, 340, 361, 397, 424, 475
AluI AGCT 9 cut(s) 166, 228, 265, 307, 340, 361, 397, 424, 475
Alw26I GTCTC 2 cut(s) 332, 879
AlwI GGATC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 6 cut(s) 60, 204, 489, 761, 803, 807
AspLEI GCGC 2 cut(s) 472, 757
AspS9I GGNCC 7 cut(s) 205, 400, 490, 535, 616, 724, 803
AsuC2I CCSGG 4 cut(s) 464, 760, 769, 802
AsuHPI GGTGA 3 cut(s) 64, 586, 857
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 4 cut(s) 400, 535, 616, 724
AxyI CCTNAGG 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 243
BanI GGYRCC 3 cut(s) 76, 698, 950
BanII GRGCYC 1 cut(s) 971
BbvCI CCTCAGC 1 cut(s) 308
BccI CCATC 3 cut(s) 175, 443, 941
BceAI ACGGC 2 cut(s) 219, 984
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 4 cut(s) 404, 620, 926, 981
BcnI CCSGG 4 cut(s) 464, 760, 769, 802
BcoDI GTCTC 2 cut(s) 332, 879
BfaI CTAG 3 cut(s) 341, 476, 837
BfmI CTRYAG 3 cut(s) 497, 636, 795
BfoI RGCGCY 1 cut(s) 758
BfuAI ACCTGC 1 cut(s) 496
BglI GCCNNNNNGGC 2 cut(s) 560, 806
Bme1390I CCNGG 8 cut(s) 404, 464, 620, 760, 769, 802, 926, 981
Bme18I GGWCC 4 cut(s) 400, 535, 616, 724
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 907
BmgT120I GGNCC 7 cut(s) 205, 400, 490, 535, 616, 724, 803
BmiI GGNNCC 4 cut(s) 78, 617, 700, 952
BmrFI CCNGG 8 cut(s) 404, 464, 620, 760, 769, 802, 926, 981
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 3 cut(s) 205, 616, 879
BmuI ACTGGG 1 cut(s) 754
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 769, 801
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 308
BpuMI CCSGG 4 cut(s) 464, 760, 769, 802
BsaHI GRCGYC 4 cut(s) 278, 735, 773, 884
BsaI GGTCTC 2 cut(s) 332, 879
BsaJI CCNNGG 6 cut(s) 57, 372, 531, 558, 758, 980
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 388, 499, 981
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 1 cut(s) 749
Bse21I CCTNAGG 1 cut(s) 786
BseBI CCWGG 4 cut(s) 404, 620, 926, 981
BseDI CCNNGG 6 cut(s) 57, 372, 531, 558, 758, 980
BseGI GGATG 5 cut(s) 186, 196, 415, 433, 952
BseLI CCNNNNNNNGG 4 cut(s) 69, 388, 499, 981
BseMII CTCAG 7 cut(s) 59, 299, 593, 651, 800, 890, 915
BseNI ACTGG 1 cut(s) 749
BseSI GKGCMC 1 cut(s) 243
BseX3I CGGCCG 1 cut(s) 807
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 1019
Bsh1285I CGRYCG 4 cut(s) 252, 442, 656, 810
BshFI GGCC 6 cut(s) 62, 206, 491, 763, 805, 809
BshNI GGYRCC 3 cut(s) 76, 698, 950
BsiEI CGRYCG 4 cut(s) 252, 442, 656, 810
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 5 cut(s) 463, 760, 768, 801, 806
BsiWI CGTACG 1 cut(s) 108
BslFI GGGAC 6 cut(s) 202, 326, 629, 761, 784, 895
BslI CCNNNNNNNGG 4 cut(s) 69, 388, 499, 981
BsmAI GTCTC 2 cut(s) 332, 879
BsmFI GGGAC 6 cut(s) 202, 326, 629, 761, 784, 895
BsnI GGCC 6 cut(s) 62, 206, 491, 763, 805, 809
Bso31I GGTCTC 2 cut(s) 332, 879
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 243, 971
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 6 cut(s) 62, 206, 491, 763, 805, 809
BspCNI CTCAG 7 cut(s) 58, 300, 594, 652, 799, 889, 914
BspFNI CGCG 1 cut(s) 1019
BspLI GGNNCC 4 cut(s) 78, 617, 700, 952
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 3 cut(s) 76, 698, 950
BspTNI GGTCTC 2 cut(s) 332, 879
BsrBI CCGCTC 4 cut(s) 136, 454, 852, 977
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 1 cut(s) 749
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 6 cut(s) 57, 372, 531, 558, 758, 980
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 4 cut(s) 278, 735, 773, 884
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 4 cut(s) 404, 620, 926, 981
Bst4CI ACNGT 4 cut(s) 52, 58, 193, 1006
Bst6I CTCTTC 2 cut(s) 20, 152
BstACI GRCGYC 4 cut(s) 278, 735, 773, 884
BstC8I GCNNGC 6 cut(s) 363, 422, 528, 672, 782, 807
BstDEI CTNAG 7 cut(s) 45, 308, 602, 660, 786, 876, 901
BstDSI CCRYGG 1 cut(s) 57
BstEII GGTNACC 2 cut(s) 52, 592
BstENI CCTNNNNNAGG 2 cut(s) 386, 497
BstF5I GGATG 5 cut(s) 186, 196, 415, 433, 952
BstFNI CGCG 1 cut(s) 1019
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 2 cut(s) 472, 757
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 332, 879
BstMBI GATC 1 cut(s) 127
BstMCI CGRYCG 4 cut(s) 252, 442, 656, 810
BstMWI GCNNNNNNNGC 9 cut(s) 110, 262, 298, 502, 560, 629, 692, 701, 806
BstNI CCWGG 4 cut(s) 404, 620, 926, 981
BstNSI RCATGY 1 cut(s) 674
BstPI GGTNACC 2 cut(s) 52, 592
BstSCI CCNGG 8 cut(s) 402, 462, 618, 758, 767, 800, 924, 979
BstSFI CTRYAG 3 cut(s) 497, 636, 795
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 1019
BstXI CCANNNNNNTGG 1 cut(s) 361
BstZI CGGCCG 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 786
BsuRI GGCC 6 cut(s) 62, 206, 491, 763, 805, 809
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 907
BtsCI GGATG 5 cut(s) 186, 196, 415, 433, 952
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 1 cut(s) 847
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 6 cut(s) 363, 422, 528, 672, 782, 807
CfoI GCGC 2 cut(s) 472, 757
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 7 cut(s) 205, 400, 490, 535, 616, 724, 803
CseI GACGC 3 cut(s) 267, 724, 892
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 3 cut(s) 109, 830, 1002
CviAII CATG 3 cut(s) 260, 487, 671
CviQI GTAC 3 cut(s) 109, 830, 1002
DdeI CTNAG 7 cut(s) 45, 308, 602, 660, 786, 876, 901
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 3 cut(s) 60, 761, 807
EagI CGGCCG 1 cut(s) 807
Eam1104I CTCTTC 2 cut(s) 20, 152
EarI CTCTTC 2 cut(s) 20, 152
EciI GGCGGA 2 cut(s) 380, 959
EclXI CGGCCG 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 971
Eco31I GGTCTC 2 cut(s) 332, 879
Eco47I GGWCC 4 cut(s) 400, 535, 616, 724
Eco52I CGGCCG 1 cut(s) 807
Eco57I CTGAAG 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 131
Eco91I GGTNACC 2 cut(s) 52, 592
EcoNI CCTNNNNNAGG 2 cut(s) 386, 497
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 2 cut(s) 52, 592
EcoRII CCWGG 4 cut(s) 402, 618, 924, 979
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 971
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 3 cut(s) 263, 490, 674
FaiI YATR 4 cut(s) 261, 488, 672, 956
FaqI GGGAC 6 cut(s) 202, 326, 629, 761, 784, 895
FatI CATG 3 cut(s) 259, 486, 670
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 1 cut(s) 645
FokI GGATG 5 cut(s) 183, 193, 422, 440, 959
FriOI GRGCYC 1 cut(s) 971
FseI GGCCGGCC 1 cut(s) 809
FspBI CTAG 3 cut(s) 341, 476, 837
GlaI GCGC 2 cut(s) 471, 756
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 6 cut(s) 62, 206, 491, 763, 805, 809
HapII CCGG 5 cut(s) 463, 760, 768, 801, 806
HgaI GACGC 3 cut(s) 267, 724, 892
HhaI GCGC 2 cut(s) 472, 757
Hin1I GRCGYC 4 cut(s) 278, 735, 773, 884
Hin1II CATG 3 cut(s) 263, 490, 674
Hin6I GCGC 2 cut(s) 470, 755
HinP1I GCGC 2 cut(s) 470, 755
HincII GTYRAC 1 cut(s) 857
HindII GTYRAC 1 cut(s) 857
HinfI GANTC 2 cut(s) 95, 818
HpaII CCGG 5 cut(s) 463, 760, 768, 801, 806
HphI GGTGA 3 cut(s) 64, 586, 857
Hpy166II GTNNAC 4 cut(s) 646, 830, 857, 868
Hpy188I TCNGA 5 cut(s) 48, 201, 823, 904, 988
Hpy188III TCNNGA 2 cut(s) 131, 272
Hpy8I GTNNAC 4 cut(s) 646, 830, 857, 868
Hpy99I CGWCG 4 cut(s) 85, 205, 283, 778
HpyAV CCTTC 3 cut(s) 548, 578, 724
HpyCH4III ACNGT 4 cut(s) 52, 58, 193, 1006
HpyCH4IV ACGT 3 cut(s) 773, 859, 906
HpyCH4V TGCA 4 cut(s) 196, 211, 259, 499
HpyF10VI GCNNNNNNNGC 9 cut(s) 110, 262, 298, 502, 560, 629, 692, 701, 806
HpyF3I CTNAG 7 cut(s) 45, 308, 602, 660, 786, 876, 901
HpySE526I ACGT 3 cut(s) 773, 859, 906
Hsp92I GRCGYC 4 cut(s) 278, 735, 773, 884
Hsp92II CATG 3 cut(s) 263, 490, 674
HspAI GCGC 2 cut(s) 470, 755
KroI GCCGGC 1 cut(s) 805
KroNI GCCGGC 1 cut(s) 807
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 337, 502, 982
LweI GCATC 3 cut(s) 205, 616, 879
MabI ACCWGGT 1 cut(s) 402
MaeI CTAG 3 cut(s) 341, 476, 837
MaeII ACGT 3 cut(s) 773, 859, 906
MaeIII GTNAC 3 cut(s) 52, 592, 958
MalI GATC 1 cut(s) 129
MbiI CCGCTC 4 cut(s) 136, 454, 852, 977
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 37, 139
MfeI CAATTG 1 cut(s) 215
MhlI GDGCHC 2 cut(s) 243, 971
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 4 cut(s) 72, 224, 561, 702
MroNI GCCGGC 1 cut(s) 805
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 4 cut(s) 65, 307, 632, 704
MspI CCGG 5 cut(s) 463, 760, 768, 801, 806
MspR9I CCNGG 8 cut(s) 404, 464, 620, 760, 769, 802, 926, 981
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 4 cut(s) 404, 620, 926, 981
MvnI CGCG 1 cut(s) 1019
MwoI GCNNNNNNNGC 9 cut(s) 110, 262, 298, 502, 560, 629, 692, 701, 806
NaeI GCCGGC 1 cut(s) 807
NciI CCSGG 4 cut(s) 464, 760, 769, 802
NdeII GATC 1 cut(s) 127
NgoMIV GCCGGC 1 cut(s) 805
NlaIII CATG 3 cut(s) 263, 490, 674
NlaIV GGNNCC 4 cut(s) 78, 617, 700, 952
NmeAIII GCCGAG 3 cut(s) 139, 556, 990
NmuCI GTSAC 2 cut(s) 52, 592
NspI RCATGY 1 cut(s) 674
OliI CACNNNNGTG 1 cut(s) 156
PaeI GCATGC 1 cut(s) 674
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 807
PfeI GAWTC 1 cut(s) 818
Pfl23II CGTACG 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 317
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 4 cut(s) 402, 618, 924, 979
PspEI GGTNACC 2 cut(s) 52, 592
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 4 cut(s) 402, 618, 924, 979
PspLI CGTACG 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 78, 617, 700, 952
PspPI GGNCC 7 cut(s) 205, 400, 490, 535, 616, 724, 803
PspPPI RGGWCCY 1 cut(s) 535
PstI CTGCAG 1 cut(s) 501
PsyI GACNNNGTC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 307
RigI GGCCGGCC 1 cut(s) 809
RsaI GTAC 3 cut(s) 110, 831, 1003
RsaNI GTAC 3 cut(s) 109, 830, 1002
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 572
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 7 cut(s) 205, 400, 490, 535, 616, 724, 803
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 8 cut(s) 404, 464, 620, 760, 769, 802, 926, 981
SduI GDGCHC 2 cut(s) 243, 971
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 3 cut(s) 205, 616, 879
SfcI CTRYAG 3 cut(s) 497, 636, 795
SinI GGWCC 4 cut(s) 400, 535, 616, 724
SmiMI CAYNNNNRTG 1 cut(s) 156
SphI GCATGC 1 cut(s) 674
Sse9I AATT 1 cut(s) 215
SspMI CTAG 3 cut(s) 341, 476, 837
StyD4I CCNGG 8 cut(s) 402, 462, 618, 758, 767, 800, 924, 979
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 4 cut(s) 52, 58, 193, 1006
TaiI ACGT 3 cut(s) 776, 862, 909
TaqI TCGA 5 cut(s) 230, 281, 321, 438, 776
TaqII GACCGA 3 cut(s) 140, 238, 456
TasI AATT 1 cut(s) 215
TauI GCSGC 6 cut(s) 65, 304, 632, 704, 812, 932
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 1 cut(s) 847
TseFI GTSAC 2 cut(s) 52, 592
Tsp45I GTSAC 2 cut(s) 52, 592
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 847
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 4 cut(s) 400, 535, 616, 724
XagI CCTNNNNNAGG 2 cut(s) 386, 497
XceI RCATGY 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 3 cut(s) 341, 476, 837
ZraI GACGTC 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.