Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Forward (+)

13887675 .. 13890321

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1177400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGATTCAAACGAGGGAGCAACGTAGAAGTACTGAGCAAAAAGGAGATGCCTTCAGGCTGCTGGTGCTGTGCTAAGATAATCTGTGGTAATGGCCACAACTACACAGTCAGATATGATGCATATGAGGGTAATGCTGATAACGCCGTTGTGGAGAGGGTATCCAGGGATGCCATCAGGCCTTGCCCACCTCCACTGGAAGTTTCAGAGAATTTAATTCCTGGTGATGTCATTGAGGTTTTTGACAAATTTTCTTGGAAAATGGCAACAATTACAAAGGTTTTGGGAATGGAGTGCTTTTTAATCAGGACAGTCGGATCCTCCCGGCAGCACAAGGTCAGAAAATTTGAAATCCGAGTCAGACAGTTTTGGCAAGATGACAAATGGGTTGTGATTGGAAAGGGTTTGAACCATTATGAGAATCGACAACGTGGTGAACTTTTAACTCTAAAGTTCAACCAAAATTCATACCTTAAAGCTCAGAAGAATGTAACAAAGACTGCCTCCTCTCATCTGAAGAGAAGATCACCTTACTTTTGTTCTCAAGATGAAGCATATGATGGATCTGCTGAGAAGTTTAGAGCTGTTGATATAGAGGGCAGGTGTCTCCGAGTAATTTCTGCGAATTTATCTACATTTTCTGAACAGGTAGATGTTGATTTACCAAGACGTATGCAGGGTGGAAAAGATTTACGTGCTTCTCTTTACAACAGAAAAGCTGTATTGCCTGATGTGGATGTGGAAAGGAGGAAACCAAATGGTGATGTTGGGCGTGCGTTTGCTGTGAACCTTAAATCGAACGATGCTGATAGTATTACGTGCTCTGTTGGTAGTTGTAGTATCGATACGAATGATTCCAATAAGTTACCTCCTCCTGTTTCAGCTAGTTCTACTGAAGATTTTGATGATCAGTTTTCTGATGCCGAATCTATTTGTCAATTGGGATATGAGGAAGGAATCTCTCTCCTTCCCGCTAAAGAAGAATTGGCAGCGGAGATCCATAGGTTAGAGTTGCATGCTTACCGTTGCACAATAGGGGCATTACATGCATCAGGACCTTTAAGTTGGGAACAAGAAGAATTGGTGACAAATCTTCGTCTTTCACTCCATATATCAAATGATGAACATTTAATGGAGCTTAGAAACCTAATTTCTGGAGATACCAGCATTCATATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

394

Amino Acids

44.29

Weight (kDa)

6.57

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 64	2.6e-17	Agenet domain
ENT	PF03735	331 - 388	1.6e-12	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	591
Acc36I	ACCTGC	1 cut(s)	591
AciI	CCGC	2 cut(s)	972, 992
AclWI	GGATC	4 cut(s)	312, 325, 571, 991
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	5 cut(s)	211, 248, 344, 463, 625
AcuI	CTGAAG	3 cut(s)	39, 536, 915
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	10, 350, 409, 457
AjnI	CCWGG	2 cut(s)	164, 220
AluBI	AGCT	5 cut(s)	479, 584, 719, 884, 1138
AluI	AGCT	5 cut(s)	479, 584, 719, 884, 1138
Alw21I	GWGCWC	1 cut(s)	824
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	4 cut(s)	312, 325, 571, 991
AoxI	GGCC	2 cut(s)	94, 179
ApeKI	GCWGC	3 cut(s)	60, 328, 989
ApoI	RAATTY	5 cut(s)	211, 248, 344, 463, 625
AspS9I	GGNCC	1 cut(s)	1055
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	5 cut(s)	236, 446, 519, 773, 1096
AvaII	GGWCC	1 cut(s)	1055
BalI	TGGCCA	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	824
BbvI	GCAGC	3 cut(s)	47, 340, 1001
BccI	CCATC	2 cut(s)	182, 554
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	166, 222
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	885
BfuAI	ACCTGC	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	3 cut(s)	61, 329, 990
BlsI	GCNGC	3 cut(s)	62, 330, 991
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	166, 222, 325
Bme18I	GGWCC	1 cut(s)	1055
BmgT120I	GGNCC	1 cut(s)	1055
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	3 cut(s)	166, 222, 325
BmsI	GCATC	6 cut(s)	39, 109, 160, 793, 910, 1058
BpmI	CTGGAG	1 cut(s)	1176
BpuEI	CTTGAG	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	843
BsaAI	YACGTR	2 cut(s)	695, 819
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	166, 222
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	175, 742
BseMII	CTCAG	3 cut(s)	26, 494, 561
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	2 cut(s)	496, 861
BseXI	GCAGC	3 cut(s)	47, 340, 1001
BshFI	GGCC	2 cut(s)	96, 181
BshVI	ATCGAT	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	824
BsiSI	CCGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	2 cut(s)	96, 181
Bsp1286I	GDGCHC	1 cut(s)	824
Bsp143I	GATC	5 cut(s)	317, 524, 563, 907, 996
BspACI	CCGC	2 cut(s)	972, 992
BspANI	GGCC	2 cut(s)	96, 181
BspCNI	CTCAG	3 cut(s)	27, 493, 562
BspDI	ATCGAT	1 cut(s)	843
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	312, 325, 571, 991
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	5 cut(s)	317, 524, 563, 907, 996
Bst2UI	CCWGG	2 cut(s)	166, 222
Bst4CI	ACNGT	4 cut(s)	109, 313, 366, 1025
Bst6I	CTCTTC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	1046
BstBAI	YACGTR	2 cut(s)	695, 819
BstC8I	GCNNGC	2 cut(s)	774, 1017
BstDEI	CTNAG	5 cut(s)	35, 75, 480, 570, 1139
BstF5I	GGATG	2 cut(s)	175, 742
BstKTI	GATC	5 cut(s)	320, 527, 566, 910, 999
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	5 cut(s)	317, 524, 563, 907, 996
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 143, 1046
BstNI	CCWGG	2 cut(s)	166, 222
BstNSI	RCATGY	2 cut(s)	1019, 1049
BstSCI	CCNGG	3 cut(s)	164, 220, 323
BstV1I	GCAGC	3 cut(s)	47, 340, 1001
BstX2I	RGATCY	3 cut(s)	317, 563, 996
BstYI	RGATCY	3 cut(s)	317, 563, 996
Bsu15I	ATCGAT	1 cut(s)	843
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	96, 181
BsuTUI	ATCGAT	1 cut(s)	843
BtsCI	GGATG	2 cut(s)	175, 742
BtsIMutI	CAGTG	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	2 cut(s)	774, 1017
Cfr13I	GGNCC	1 cut(s)	1055
ClaI	ATCGAT	1 cut(s)	843
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	2 cut(s)	1016, 1046
CviJI	RGCY	8 cut(s)	60, 96, 181, 479, 584, 719, 884, 1138
CviKI_1	RGCY	8 cut(s)	60, 96, 181, 479, 584, 719, 884, 1138
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	5 cut(s)	35, 75, 480, 570, 1139
DpnI	GATC	5 cut(s)	319, 526, 565, 909, 998
DpnII	GATC	5 cut(s)	317, 524, 563, 907, 996
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	1055
Eco57I	CTGAAG	3 cut(s)	39, 536, 915
EcoO109I	RGGNCCY	1 cut(s)	1055
EcoRII	CCWGG	2 cut(s)	164, 220
EcoT22I	ATGCAT	2 cut(s)	124, 1051
FaeI	CATG	2 cut(s)	1019, 1049
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	2 cut(s)	1015, 1045
FauI	CCCGC	1 cut(s)	979
FauNDI	CATATG	2 cut(s)	124, 556
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	3 cut(s)	61, 329, 990
FokI	GGATG	2 cut(s)	182, 749
Fsp4HI	GCNGC	3 cut(s)	61, 329, 990
FspBI	CTAG	1 cut(s)	885
GluI	GCNGC	3 cut(s)	61, 329, 990
GsuI	CTGGAG	1 cut(s)	1176
HaeIII	GGCC	2 cut(s)	96, 181
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	2 cut(s)	1019, 1049
HinfI	GANTC	6 cut(s)	6, 357, 421, 854, 926, 957
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	5 cut(s)	236, 446, 519, 773, 1096
Hpy166II	GTNNAC	2 cut(s)	437, 787
Hpy188III	TCNNGA	4 cut(s)	307, 545, 1053, 1155
Hpy8I	GTNNAC	2 cut(s)	437, 787
HpyAV	CCTTC	3 cut(s)	63, 947, 977
HpyCH4III	ACNGT	4 cut(s)	109, 313, 366, 1025
HpyCH4IV	ACGT	5 cut(s)	24, 430, 670, 694, 818
HpyCH4V	TGCA	5 cut(s)	122, 676, 1015, 1029, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 143, 1046
HpyF3I	CTNAG	5 cut(s)	35, 75, 480, 570, 1139
HpySE526I	ACGT	5 cut(s)	24, 430, 670, 694, 818
Hsp92II	CATG	2 cut(s)	1019, 1049
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	5 cut(s)	317, 524, 563, 907, 996
LmnI	GCTCC	2 cut(s)	18, 1135
Lsp1109I	GCAGC	3 cut(s)	47, 340, 1001
LweI	GCATC	6 cut(s)	39, 109, 160, 793, 910, 1058
MaeI	CTAG	1 cut(s)	885
MaeII	ACGT	5 cut(s)	24, 430, 670, 694, 818
MaeIII	GTNAC	3 cut(s)	490, 864, 1084
MalI	GATC	5 cut(s)	319, 526, 565, 909, 998
MboI	GATC	5 cut(s)	317, 524, 563, 907, 996
MboII	GAAGA	7 cut(s)	496, 529, 534, 908, 992, 1085, 1088
MfeI	CAATTG	1 cut(s)	938
MflI	RGATCY	3 cut(s)	317, 563, 996
MhlI	GDGCHC	1 cut(s)	824
MlsI	TGGCCA	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	96
Mph1103I	ATGCAT	2 cut(s)	124, 1051
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	7 cut(s)	215, 302, 443, 474, 792, 1061, 1130
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	166, 222, 325
MunI	CAATTG	1 cut(s)	938
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	2 cut(s)	166, 222
MwoI	GCNNNNNNNGC	3 cut(s)	66, 143, 1046
NciI	CCSGG	1 cut(s)	325
NdeI	CATATG	2 cut(s)	124, 556
NdeII	GATC	5 cut(s)	317, 524, 563, 907, 996
NlaIII	CATG	2 cut(s)	1019, 1049
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	1084
NsiI	ATGCAT	2 cut(s)	124, 1051
NspI	RCATGY	2 cut(s)	1019, 1049
PaeI	GCATGC	1 cut(s)	1019
PaqCI	CACCTGC	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	181
PctI	GAATGC	1 cut(s)	1167
PfeI	GAWTC	5 cut(s)	6, 421, 854, 926, 957
PkrI	GCNGC	3 cut(s)	62, 330, 991
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Ppu21I	YACGTR	2 cut(s)	695, 819
PpuMI	RGGWCCY	1 cut(s)	1055
Psp5II	RGGWCCY	1 cut(s)	1055
Psp6I	CCWGG	2 cut(s)	164, 220
PspGI	CCWGG	2 cut(s)	164, 220
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	1055
PspPPI	RGGWCCY	1 cut(s)	1055
PsuI	RGATCY	3 cut(s)	317, 563, 996
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	7 cut(s)	215, 302, 443, 474, 792, 1061, 1130
SatI	GCNGC	3 cut(s)	61, 329, 990
Sau3AI	GATC	5 cut(s)	317, 524, 563, 907, 996
Sau96I	GGNCC	1 cut(s)	1055
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	3 cut(s)	166, 222, 325
SduI	GDGCHC	1 cut(s)	824
SfaNI	GCATC	6 cut(s)	39, 109, 160, 793, 910, 1058
SinI	GGWCC	1 cut(s)	1055
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	1019
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	972, 992
SspMI	CTAG	1 cut(s)	885
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	3 cut(s)	164, 220, 323
TaaI	ACNGT	4 cut(s)	109, 313, 366, 1025
TaiI	ACGT	5 cut(s)	27, 433, 673, 697, 821
TaqI	TCGA	3 cut(s)	424, 797, 843
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	5 cut(s)	6, 421, 854, 926, 957
Tru1I	TTAA	7 cut(s)	215, 302, 443, 474, 792, 1061, 1130
Tru9I	TTAA	7 cut(s)	215, 302, 443, 474, 792, 1061, 1130
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	1084
TseI	GCWGC	3 cut(s)	60, 328, 989
Tsp45I	GTSAC	1 cut(s)	1084
TspDTI	ATGAA	4 cut(s)	456, 564, 1137, 1160
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	1055
XapI	RAATTY	5 cut(s)	211, 248, 344, 463, 625
XceI	RCATGY	2 cut(s)	1019, 1049
XspI	CTAG	1 cut(s)	885
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	124, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.