Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Forward (+)

1965332 .. 1967840

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCAACTTGGCATAGAAACCATGCCATATTCGTTTTAAAACTAACACAAAACCACCACAACAAGAAGAAGAAGAGGAAGAATCAGAGAGTTCAAACTTTTTCTGATAACCAAATTTTTCTCTCTGAATTGGAGAAAAGGTTTTGTAATTGGGAATTTGCATATAGCATCATGAGATTCAAACGAGGGAGCATTGTCGAAGTATTGAGCAAAAAGGAGATGCCTTCAGGCTGCTGGTGCTCTGCTAAGATAATCTGCGGTAACGGCCACAACTACACTGTCAGATATGATGGATATGAGGGTAACGCTGATAACGCTGTTGTGGAGAGGGTATCCAGAGATGCCATCAGGCCTTGCCCACCTTCACTGGAAGTTTCAGGGAATTTGGTTCCTGGTGATGTCATTGAGTTTTTAGACAATTTTTCTTGGAAAATGGCAGCAATTACAAAGGTTTTGGGAAATGAGTGCTTTTTAATCAGGCCAGTCGGATCCTCCCGGCAATACAAGGTCGGAAAATTTGAAATCCGAGTCAGACAGTTTTGGCAAGATGACAAATGGGTTGTGATTGGAAAGGGTTTGAACAATTACGAGAATAAAAAACGTGGTGAATTTTTAACTCCAAAGTTCAATCAACATTCATATCGTAAAGCTCAGAAGAACGAAACGCTGACTGCCTCCTCTCATCTGAAGAGAAGATCACCCTACCTGTGTTCTCAAGATGAAGCATATGGTGGACCTGCTGAGAAGTTTAGAGCTGTTGAAAAAGAGGGAAGGTGTCTCCGAGTAATTGCTGCGAATTTCTGTACATTTTCTGAACAGGTAGATGTTGCTTTACCAGGACGTATGCAGGGTGGAAAAGATATACGTGCTTCTCTTAACAACAGAAAAAGTGTATTGTCTGATGTGGATGTTGAAAGGAGGAAACCAAGTGGTGATGTTGGGCGTTTGTTTGCTGTGAACCTAAATTCGAATGATGCTGATGGTGTTACATGCTCTGTTGGTAGTTGTAGTATTGATAGCAAAGATTTCAATAAGTTGCCTCCTCCTGTTTCTGCTAGTTCTACTGAAGATTTTGATGATCAGTTTTCCGATGCCGAATCTTCTTTTCAATTGAGATACGAGGAAGGAAACTCTCTCCTTCCTGCTAAAGAAGAATTAGCAGATGAGATCCATAGGTTAGAGTTGCATGCTTACCGTTGCACAATAGGGGCATTACATGCGTCAGGACCTTTAAGTTGGGAACAAGAAGAATTGGTGACGAATCTTCGCCTTTCACTCCATATATCAAATGATGAACATTTAATGGAGCTTAGAAACTTAATTTCTGGAGATACCAGCATTCATATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

451

Amino Acids

51.1

Weight (kDa)

8.6

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	3 cut(s)	483, 496, 1162
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	7 cut(s)	114, 155, 382, 515, 608, 796, 964
AcuI	CTGAAG	3 cut(s)	210, 707, 1086
AfaI	GTAC	1 cut(s)	805
AgsI	TTSAA	9 cut(s)	95, 181, 521, 580, 628, 761, 914, 1030, 1109
AjnI	CCWGG	2 cut(s)	391, 835
AluBI	AGCT	3 cut(s)	650, 755, 1309
AluI	AGCT	3 cut(s)	650, 755, 1309
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	782
AlwI	GGATC	3 cut(s)	483, 496, 1162
AoxI	GGCC	3 cut(s)	265, 350, 479
ApeKI	GCWGC	3 cut(s)	231, 437, 791
ApoI	RAATTY	7 cut(s)	114, 155, 382, 515, 608, 796, 964
AspS9I	GGNCC	2 cut(s)	734, 1226
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	5 cut(s)	407, 617, 690, 944, 1267
AsuII	TTCGAA	1 cut(s)	968
AvaII	GGWCC	2 cut(s)	734, 1226
BamHI	GGATCC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	218, 449, 778
BccI	CCATC	3 cut(s)	284, 353, 974
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	393, 837
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	1078
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	782
BfaI	CTAG	1 cut(s)	1056
BfuAI	ACCTGC	1 cut(s)	745
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	232, 438, 792
BlsI	GCNGC	3 cut(s)	233, 439, 793
Bme1390I	CCNGG	3 cut(s)	393, 496, 837
Bme18I	GGWCC	2 cut(s)	734, 1226
BmgT120I	GGNCC	2 cut(s)	734, 1226
BmiI	GGNNCC	2 cut(s)	390, 490
BmrFI	CCNGG	3 cut(s)	393, 496, 837
BmsI	GCATC	5 cut(s)	177, 210, 331, 964, 1081
BpmI	CTGGAG	1 cut(s)	1347
Bpu14I	TTCGAA	1 cut(s)	968
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	2 cut(s)	372, 482
BseBI	CCWGG	2 cut(s)	393, 837
BseGI	GGATG	1 cut(s)	913
BseMII	CTCAG	2 cut(s)	665, 732
BseNI	ACTGG	2 cut(s)	372, 482
BseRI	GAGGAG	2 cut(s)	667, 1032
BseXI	GCAGC	3 cut(s)	218, 449, 778
BshFI	GGCC	3 cut(s)	267, 352, 481
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	782
BsmI	GAATGC	1 cut(s)	1338
BsnI	GGCC	3 cut(s)	267, 352, 481
Bsp119I	TTCGAA	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp1407I	TGTACA	1 cut(s)	803
Bsp143I	GATC	4 cut(s)	488, 695, 1078, 1167
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	3 cut(s)	267, 352, 481
BspCNI	CTCAG	2 cut(s)	664, 733
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	390, 490
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	3 cut(s)	483, 496, 1162
BspT104I	TTCGAA	1 cut(s)	968
BsrGI	TGTACA	1 cut(s)	803
BsrI	ACTGG	2 cut(s)	372, 482
BssMI	GATC	4 cut(s)	488, 695, 1078, 1167
Bst2UI	CCWGG	2 cut(s)	393, 837
Bst4CI	ACNGT	3 cut(s)	280, 537, 1196
Bst6I	CTCTTC	2 cut(s)	68, 683
BstAPI	GCANNNNNTGC	1 cut(s)	1217
BstAUI	TGTACA	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	866
BstBI	TTCGAA	1 cut(s)	968
BstC8I	GCNNGC	1 cut(s)	1188
BstDEI	CTNAG	4 cut(s)	246, 651, 741, 1310
BstF5I	GGATG	1 cut(s)	913
BstKTI	GATC	4 cut(s)	491, 698, 1081, 1170
BstMAI	GTCTC	1 cut(s)	782
BstMBI	GATC	4 cut(s)	488, 695, 1078, 1167
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 264, 314, 1217
BstNI	CCWGG	2 cut(s)	393, 837
BstNSI	RCATGY	3 cut(s)	993, 1190, 1220
BstSCI	CCNGG	3 cut(s)	391, 494, 835
BstV1I	GCAGC	3 cut(s)	218, 449, 778
BstX2I	RGATCY	2 cut(s)	488, 1167
BstYI	RGATCY	2 cut(s)	488, 1167
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	267, 352, 481
BtsCI	GGATG	1 cut(s)	913
BtsIMutI	CAGTG	2 cut(s)	276, 365
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	1 cut(s)	1188
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	734, 1226
CseI	GACGC	1 cut(s)	1209
Csp6I	GTAC	1 cut(s)	804
CviAII	CATG	5 cut(s)	23, 172, 990, 1187, 1217
CviJI	RGCY	7 cut(s)	231, 267, 352, 481, 650, 755, 1309
CviKI_1	RGCY	7 cut(s)	231, 267, 352, 481, 650, 755, 1309
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	4 cut(s)	246, 651, 741, 1310
DpnI	GATC	4 cut(s)	490, 697, 1080, 1169
DpnII	GATC	4 cut(s)	488, 695, 1078, 1167
DraI	TTTAAA	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	68, 683
EarI	CTCTTC	2 cut(s)	68, 683
Eco147I	AGGCCT	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	734, 1226
Eco57I	CTGAAG	3 cut(s)	210, 707, 1086
EcoO109I	RGGNCCY	1 cut(s)	1226
EcoRII	CCWGG	2 cut(s)	391, 835
FaeI	CATG	5 cut(s)	26, 175, 993, 1190, 1220
FatI	CATG	5 cut(s)	22, 171, 989, 1186, 1216
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	3 cut(s)	232, 438, 792
FokI	GGATG	1 cut(s)	920
Fsp4HI	GCNGC	3 cut(s)	232, 438, 792
FspBI	CTAG	1 cut(s)	1056
GluI	GCNGC	3 cut(s)	232, 438, 792
GsuI	CTGGAG	1 cut(s)	1347
HaeIII	GGCC	3 cut(s)	267, 352, 481
HapII	CCGG	1 cut(s)	496
HgaI	GACGC	1 cut(s)	1209
Hin1II	CATG	5 cut(s)	26, 175, 993, 1190, 1220
HinfI	GANTC	5 cut(s)	82, 177, 528, 1097, 1261
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	5 cut(s)	407, 617, 690, 944, 1267
Hpy166II	GTNNAC	2 cut(s)	734, 958
Hpy188III	TCNNGA	5 cut(s)	172, 336, 716, 1224, 1326
Hpy8I	GTNNAC	2 cut(s)	734, 958
HpyAV	CCTTC	5 cut(s)	234, 372, 765, 1118, 1148
HpyCH4III	ACNGT	3 cut(s)	280, 537, 1196
HpyCH4IV	ACGT	3 cut(s)	601, 841, 865
HpyCH4V	TGCA	4 cut(s)	161, 847, 1186, 1200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 264, 314, 1217
HpyF3I	CTNAG	4 cut(s)	246, 651, 741, 1310
HpySE526I	ACGT	3 cut(s)	601, 841, 865
Hsp92II	CATG	5 cut(s)	26, 175, 993, 1190, 1220
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	4 cut(s)	488, 695, 1078, 1167
LmnI	GCTCC	2 cut(s)	189, 1306
Lsp1109I	GCAGC	3 cut(s)	218, 449, 778
LweI	GCATC	5 cut(s)	177, 210, 331, 964, 1081
MaeI	CTAG	1 cut(s)	1056
MaeII	ACGT	3 cut(s)	601, 841, 865
MaeIII	GTNAC	4 cut(s)	260, 302, 985, 1255
MalI	GATC	4 cut(s)	490, 697, 1080, 1169
MboI	GATC	4 cut(s)	488, 695, 1078, 1167
MfeI	CAATTG	1 cut(s)	1109
MflI	RGATCY	2 cut(s)	488, 1167
MhlI	GDGCHC	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	537
MmeI	TCCRAC	2 cut(s)	466, 490
MseI	TTAA	7 cut(s)	38, 473, 614, 876, 1232, 1301, 1319
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	3 cut(s)	393, 496, 837
MunI	CAATTG	1 cut(s)	1109
Mva1269I	GAATGC	1 cut(s)	1338
MvaI	CCWGG	2 cut(s)	393, 837
MwoI	GCNNNNNNNGC	4 cut(s)	237, 264, 314, 1217
NciI	CCSGG	1 cut(s)	496
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	4 cut(s)	488, 695, 1078, 1167
NlaIII	CATG	5 cut(s)	26, 175, 993, 1190, 1220
NlaIV	GGNNCC	2 cut(s)	390, 490
NmuCI	GTSAC	1 cut(s)	1255
NspI	RCATGY	3 cut(s)	993, 1190, 1220
NspV	TTCGAA	1 cut(s)	968
PaeI	GCATGC	1 cut(s)	1190
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	352
PctI	GAATGC	1 cut(s)	1338
PfeI	GAWTC	4 cut(s)	82, 177, 1097, 1261
PkrI	GCNGC	3 cut(s)	233, 439, 793
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	1226
Psp5II	RGGWCCY	1 cut(s)	1226
Psp6I	CCWGG	2 cut(s)	391, 835
PspGI	CCWGG	2 cut(s)	391, 835
PspN4I	GGNNCC	2 cut(s)	390, 490
PspPI	GGNCC	2 cut(s)	734, 1226
PspPPI	RGGWCCY	1 cut(s)	1226
PsuI	RGATCY	2 cut(s)	488, 1167
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
SaqAI	TTAA	7 cut(s)	38, 473, 614, 876, 1232, 1301, 1319
SatI	GCNGC	3 cut(s)	232, 438, 792
Sau3AI	GATC	4 cut(s)	488, 695, 1078, 1167
Sau96I	GGNCC	2 cut(s)	734, 1226
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	3 cut(s)	393, 496, 837
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	5 cut(s)	177, 210, 331, 964, 1081
SfuI	TTCGAA	1 cut(s)	968
SinI	GGWCC	2 cut(s)	734, 1226
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
SphI	GCATGC	1 cut(s)	1190
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	1056
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	391, 494, 835
TaaI	ACNGT	3 cut(s)	280, 537, 1196
TaiI	ACGT	3 cut(s)	604, 844, 868
TaqI	TCGA	2 cut(s)	198, 968
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	4 cut(s)	82, 177, 1097, 1261
Tru1I	TTAA	7 cut(s)	38, 473, 614, 876, 1232, 1301, 1319
Tru9I	TTAA	7 cut(s)	38, 473, 614, 876, 1232, 1301, 1319
TscAI	CASTG	2 cut(s)	283, 372
TseFI	GTSAC	1 cut(s)	1255
TseI	GCWGC	3 cut(s)	231, 437, 791
Tsp45I	GTSAC	1 cut(s)	1255
TspDTI	ATGAA	4 cut(s)	627, 735, 1308, 1331
TspRI	CASTG	2 cut(s)	283, 372
VpaK11BI	GGWCC	2 cut(s)	734, 1226
XapI	RAATTY	7 cut(s)	114, 155, 382, 515, 608, 796, 964
XceI	RCATGY	3 cut(s)	993, 1190, 1220
XspI	CTAG	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.