Rorug01G0490100

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005962
Physical Location & Seq
Reverse (-)
57584976 .. 57587093
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0490100.1

Sequence Viewer

Length: 1692 bp
ATGAACCACTTTACACTACATAGTGCAGACACTATAAATAAACACATACCAAATACCAGACTCATTGAATTATTTGAAGAGATGATGATGCCAAAAGTTCAGCAAATGCTAGAACTGAAACTTAATGAAACCTTTTCAATCCCTTTGCAACCTTTTCCTTTCCAATATATATTCCTTGTGGCCATTTTCTTCATTCTCTTACGCAGATGGTCCTCTTATAGAAACTCATCGGTACCACCTTCTCCACCAAAGCTACCCATCATTGGTAACCTTCACCAAGTAGGCTCGCTTCCTCATCGTTCACTTCAAACCTTATCTCAACGCCATGGGCCTGTCATGCTGCTCCATTTCGGAAGCAGGCCAGTCCTTGTCATCTCGTCGGCTGAGGCTGCCTCCCAGATCTTCAAAACCCATGACCTAATATTCTCCGACAGACCCAAGTTCATCTTCTTTGAAAAGATTATCTACAACTACAAGGACATTGTATCTGCCCCTTATGGTGAGTACTGGAGGCAGCTCAGAAGTATATGTGTCTTGAATCTTTTGAGCAACAAAAGGGTTCGTTCTTTTCATGTTGTAAGACAAGAGGAAACAAGATTGATGATAAGTAACATACTACAGTCTTGTAGTACTCTATCATCCTCCTCCTCTTCCTCCTCACCGGTTTTAAATCTAAGCAACATCTTTATGAAGCTTAGTAATGATGTCATATGCAAAGTTGCTATGGGGAGGAAGTACAGCGATCTCGGGGAAGATAGAGGGAAGATGTTCATGAGGATTTCTAAAGATTTGTCAGAGTTCTTCACACGTGTTAACATTGGTGACTATATTCCATGGCTTGCTTGGTTCACTCGCCTCAGTGGGTTTGACGCTAAATTAGATAACCTGGCTAAACGAGCGGATGCGTTTTTTGATATGGTTATTCAAGAGCATATTGATAAATCAAATAGTGGAATTGATGGTATGAACGAAAATGAAGACCAGAAGGATTTTGTGGACGTTTTACTTGCGGTTCAGAAAGAAAATGCAGCTCATGTCCTTACTGATCGAGTTGGCATAAAGGCAATCATCCTGGATATTTTTGCGGCTGGCAGTGATACTACATTTACATCCTTAGAGTGGGTTATGTCTGAGCTTATGAGGAATCCAAGGGTGATGACAAAATTGCAGAATGAGGTCAGGGAAGTAGTTGGAAACAAAGAAGATATAAAAGAGGATGATTTGGTGGAAATGAACTACTTGAAGGCAGTGATCAAAGAAACTTTTCGCTTGCATCCTCCATTTCCATTACTTGTTCCCAGGATGTCCAACCAAAATGTGAAAATAAACGGTTACAACATTAAGGCTAAAACACAAGTTATGGTGAATGCATGGGCAATTGGAAGAGATCCCAAGTCATACACAAATGCCGAGCAGTATGAGCCAGAAAGATTCTTAAACAGTACTATAGATTATAAAGGGAATGACTTTGAATTAATTCCATTTGGTTCTGGTAGGCGAGGATGCCCAGGAATCCAATTTTCCATTGCTATGATAGAGATTGTTTTGGCAAATATTGTTCACAAGTTTAACTGGAAATTGCCTGATGGTGCAAGAGCAGAGGATTTAGACATGAGTGAATCCACTGGCATAACCGCATCTAGAAAACATCCTCTCAAAGTGGTTGCCATACCATATTTTTCCTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet ENT

Protein Analysis

563

Amino Acids

64.44

Weight (kDa)

8.71

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 79 - 540 5.1e-105 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1455
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 899
AciI CCGC 4 cut(s) 899, 1010, 1085, 1635
AclWI GGATC 1 cut(s) 1382
AcoI YGGCCR 1 cut(s) 180
AcvI CACGTG 1 cut(s) 809
AfaI GTAC 5 cut(s) 234, 506, 631, 737, 1444
AfiI CCNNNNNNNGG 2 cut(s) 263, 1119
AflIII ACRYGT 2 cut(s) 806, 808
AgeI ACCGGT 1 cut(s) 661
AjnI CCWGG 4 cut(s) 885, 1071, 1298, 1507
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 253, 517, 694, 1031, 1135
AluI AGCT 5 cut(s) 253, 517, 694, 1031, 1135
AlwI GGATC 1 cut(s) 1382
Ama87I CYCGRG 1 cut(s) 746
AoxI GGCC 3 cut(s) 180, 329, 359
ApeKI GCWGC 4 cut(s) 340, 389, 514, 1028
AseI ATTAAT 1 cut(s) 1475
AsiGI ACCGGT 1 cut(s) 661
Asp700I GAANNNNTTC 3 cut(s) 767, 1263, 1476
Asp718I GGTACC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 210, 329
AsuHPI GGTGA 6 cut(s) 266, 512, 651, 833, 1165, 1375
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 1 cut(s) 210
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 232
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbrPI CACGTG 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 984
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 4 cut(s) 327, 376, 526, 1040
BccI CCATC 4 cut(s) 201, 266, 953, 1580
BciT130I CCWGG 4 cut(s) 887, 1073, 1300, 1509
BclI TGATCA 1 cut(s) 1251
BfaI CTAG 2 cut(s) 110, 1641
BfmI CTRYAG 2 cut(s) 617, 1446
BglII AGATCT 1 cut(s) 399
BisI GCNGC 5 cut(s) 341, 390, 515, 1029, 1086
BlsI GCNGC 5 cut(s) 342, 391, 516, 1030, 1087
BmcAI AGTACT 3 cut(s) 506, 631, 1444
Bme1390I CCNGG 4 cut(s) 887, 1073, 1300, 1509
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 210, 329
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 4 cut(s) 887, 1073, 1300, 1509
BmsI GCATC 5 cut(s) 78, 892, 1282, 1493, 1646
BpiI GAAGAC 1 cut(s) 984
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 1 cut(s) 529
Bpu10I CCTNAGC 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 809
BsaJI CCNNGG 5 cut(s) 325, 833, 1148, 1298, 1507
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 1119
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 4 cut(s) 362, 512, 1577, 1630
Bse3DI GCAATG 1 cut(s) 1524
BseBI CCWGG 4 cut(s) 887, 1073, 1300, 1509
BseDI CCNNGG 5 cut(s) 325, 833, 1148, 1298, 1507
BseGI GGATG 9 cut(s) 638, 907, 1068, 1109, 1222, 1273, 1308, 1508, 1648
BseLI CCNNNNNNNGG 2 cut(s) 263, 1119
BseMI GCAATG 1 cut(s) 1524
BseMII CTCAG 4 cut(s) 375, 532, 871, 1122
BseNI ACTGG 4 cut(s) 362, 512, 1577, 1630
BseRI GAGGAG 3 cut(s) 634, 637, 646
BseXI GCAGC 4 cut(s) 327, 376, 526, 1040
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 3 cut(s) 182, 331, 361
BshNI GGYRCC 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 1 cut(s) 662
BslI CCNNNNNNNGG 2 cut(s) 263, 1119
BsmI GAATGC 1 cut(s) 1372
BsnI GGCC 3 cut(s) 182, 331, 361
BsoBI CYCGRG 1 cut(s) 746
Bsp143I GATC 5 cut(s) 399, 742, 1045, 1251, 1387
Bsp19I CCATGG 2 cut(s) 325, 833
BspACI CCGC 4 cut(s) 899, 1010, 1085, 1635
BspANI GGCC 3 cut(s) 182, 331, 361
BspCNI CTCAG 4 cut(s) 376, 531, 870, 1123
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 1382
BspT107I GGYRCC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 899
BsrDI GCAATG 1 cut(s) 1524
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 4 cut(s) 362, 512, 1577, 1630
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 5 cut(s) 325, 833, 1148, 1298, 1507
BssMI GATC 5 cut(s) 399, 742, 1045, 1251, 1387
BssT1I CCWWGG 3 cut(s) 325, 833, 1148
Bst2UI CCWGG 4 cut(s) 887, 1073, 1300, 1509
Bst4CI ACNGT 3 cut(s) 621, 1331, 1442
Bst6I CTCTTC 3 cut(s) 72, 655, 1378
BstBAI YACGTR 1 cut(s) 809
BstC8I GCNNGC 5 cut(s) 287, 359, 840, 1090, 1271
BstDEI CTNAG 7 cut(s) 384, 518, 674, 695, 857, 1114, 1131
BstDSI CCRYGG 2 cut(s) 325, 833
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 9 cut(s) 638, 907, 1068, 1109, 1222, 1273, 1308, 1508, 1648
BstKTI GATC 5 cut(s) 402, 745, 1048, 1254, 1390
BstMBI GATC 5 cut(s) 399, 742, 1045, 1251, 1387
BstMWI GCNNNNNNNGC 4 cut(s) 337, 389, 896, 1420
BstNI CCWGG 4 cut(s) 887, 1073, 1300, 1509
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 4 cut(s) 885, 1071, 1298, 1507
BstSFI CTRYAG 2 cut(s) 617, 1446
BstV1I GCAGC 4 cut(s) 327, 376, 526, 1040
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 2 cut(s) 399, 1387
BstYI RGATCY 2 cut(s) 399, 1387
BsuRI GGCC 3 cut(s) 182, 331, 361
BtgI CCRYGG 2 cut(s) 325, 833
BtsCI GGATG 9 cut(s) 638, 907, 1068, 1109, 1222, 1273, 1308, 1508, 1648
BtsI GCAGTG 2 cut(s) 1099, 1254
BtsIMutI CAGTG 4 cut(s) 865, 1099, 1254, 1623
Cac8I GCNNGC 5 cut(s) 287, 359, 840, 1090, 1271
CciI TCATGA 1 cut(s) 771
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 210, 329
CseI GACGC 1 cut(s) 878
Csp6I GTAC 5 cut(s) 233, 505, 630, 736, 1443
CspAI ACCGGT 1 cut(s) 661
CviAII CATG 9 cut(s) 326, 337, 413, 572, 772, 834, 1034, 1371, 1612
CviQI GTAC 5 cut(s) 233, 505, 630, 736, 1443
DdeI CTNAG 7 cut(s) 384, 518, 674, 695, 857, 1114, 1131
DpnI GATC 5 cut(s) 401, 744, 1047, 1253, 1389
DpnII GATC 5 cut(s) 399, 742, 1045, 1251, 1387
DraI TTTAAA 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 72, 655, 1378
EarI CTCTTC 3 cut(s) 72, 655, 1378
Eco130I CCWWGG 3 cut(s) 325, 833, 1148
Eco47I GGWCC 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 809
Eco88I CYCGRG 1 cut(s) 746
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 4 cut(s) 885, 1071, 1298, 1507
EcoT14I CCWWGG 3 cut(s) 325, 833, 1148
EcoT22I ATGCAT 1 cut(s) 1372
ErhI CCWWGG 3 cut(s) 325, 833, 1148
FaeI CATG 9 cut(s) 329, 340, 416, 575, 775, 837, 1037, 1374, 1615
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 9 cut(s) 325, 336, 412, 571, 771, 833, 1033, 1370, 1611
FauNDI CATATG 1 cut(s) 710
FbaI TGATCA 1 cut(s) 1251
Fnu4HI GCNGC 5 cut(s) 341, 390, 515, 1029, 1086
FokI GGATG 9 cut(s) 625, 914, 1055, 1096, 1229, 1260, 1315, 1515, 1635
Fsp4HI GCNGC 5 cut(s) 341, 390, 515, 1029, 1086
FspBI CTAG 2 cut(s) 110, 1641
GluI GCNGC 5 cut(s) 341, 390, 515, 1029, 1086
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 3 cut(s) 182, 331, 361
HapII CCGG 1 cut(s) 662
HgaI GACGC 1 cut(s) 878
Hin1II CATG 9 cut(s) 329, 340, 416, 575, 775, 837, 1037, 1374, 1615
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 6 cut(s) 60, 538, 1144, 1431, 1512, 1619
HpaI GTTAAC 1 cut(s) 814
HpaII CCGG 1 cut(s) 662
HphI GGTGA 6 cut(s) 266, 512, 651, 833, 1165, 1375
Hpy166II GTNNAC 5 cut(s) 302, 814, 849, 997, 1561
Hpy188I TCNGA 7 cut(s) 353, 430, 521, 796, 1017, 1132, 1691
Hpy188III TCNNGA 4 cut(s) 535, 772, 926, 1641
Hpy8I GTNNAC 5 cut(s) 302, 814, 849, 997, 1561
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 4 cut(s) 249, 281, 979, 1237
HpyCH4III ACNGT 3 cut(s) 621, 1331, 1442
HpyCH4IV ACGT 2 cut(s) 808, 999
HpyCH4V TGCA 8 cut(s) 26, 148, 714, 1028, 1168, 1273, 1370, 1592
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 389, 896, 1420
HpyF3I CTNAG 7 cut(s) 384, 518, 674, 695, 857, 1114, 1131
HpySE526I ACGT 2 cut(s) 808, 999
Hsp92II CATG 9 cut(s) 329, 340, 416, 575, 775, 837, 1037, 1374, 1615
KpnI GGTACC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 1251
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 399, 742, 1045, 1251, 1387
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 4 cut(s) 327, 376, 526, 1040
LweI GCATC 5 cut(s) 78, 892, 1282, 1493, 1646
MaeI CTAG 2 cut(s) 110, 1641
MaeII ACGT 2 cut(s) 808, 999
MaeIII GTNAC 4 cut(s) 266, 608, 821, 1331
MalI GATC 5 cut(s) 401, 744, 1047, 1253, 1389
MbiI CCGCTC 1 cut(s) 899
MboI GATC 5 cut(s) 399, 742, 1045, 1251, 1387
MfeI CAATTG 1 cut(s) 1377
MflI RGATCY 2 cut(s) 399, 1387
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 9 cut(s) 68, 875, 954, 1163, 1377, 1472, 1476, 1517, 1577
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 3 cut(s) 453, 1171, 1332
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 1372
MroXI GAANNNNTTC 3 cut(s) 767, 1263, 1476
MscI TGGCCA 1 cut(s) 182
MseI TTAA 7 cut(s) 123, 668, 813, 1341, 1436, 1475, 1569
MslI CAYNNNNRTG 2 cut(s) 686, 1529
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 4 cut(s) 887, 1073, 1300, 1509
MunI CAATTG 1 cut(s) 1377
Mva1269I GAATGC 1 cut(s) 1372
MvaI CCWGG 4 cut(s) 887, 1073, 1300, 1509
MwoI GCNNNNNNNGC 4 cut(s) 337, 389, 896, 1420
NcoI CCATGG 2 cut(s) 325, 833
NdeI CATATG 1 cut(s) 710
NdeII GATC 5 cut(s) 399, 742, 1045, 1251, 1387
NlaIII CATG 9 cut(s) 329, 340, 416, 575, 775, 837, 1037, 1374, 1615
NlaIV GGNNCC 1 cut(s) 234
NmeAIII GCCGAG 1 cut(s) 1435
NmuCI GTSAC 1 cut(s) 821
NsiI ATGCAT 1 cut(s) 1372
PagI TCATGA 1 cut(s) 771
PctI GAATGC 1 cut(s) 1372
PdmI GAANNNNTTC 3 cut(s) 767, 1263, 1476
PfeI GAWTC 5 cut(s) 538, 1144, 1431, 1512, 1619
PfoI TCCNGGA 1 cut(s) 1071
PinAI ACCGGT 1 cut(s) 661
PkrI GCNGC 5 cut(s) 342, 391, 516, 1030, 1087
PleI GAGTC 1 cut(s) 54
PmaCI CACGTG 1 cut(s) 809
PmlI CACGTG 1 cut(s) 809
PpsI GAGTC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 809
PshBI ATTAAT 1 cut(s) 1475
PsiI TTATAA 1 cut(s) 1455
Psp6I CCWGG 4 cut(s) 885, 1071, 1298, 1507
PspCI CACGTG 1 cut(s) 809
PspEI GGTNACC 1 cut(s) 266
PspGI CCWGG 4 cut(s) 885, 1071, 1298, 1507
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 210, 329
PsuI RGATCY 2 cut(s) 399, 1387
RsaI GTAC 5 cut(s) 234, 506, 631, 737, 1444
RsaNI GTAC 5 cut(s) 233, 505, 630, 736, 1443
RseI CAYNNNNRTG 2 cut(s) 686, 1529
SaqAI TTAA 7 cut(s) 123, 668, 813, 1341, 1436, 1475, 1569
SatI GCNGC 5 cut(s) 341, 390, 515, 1029, 1086
Sau3AI GATC 5 cut(s) 399, 742, 1045, 1251, 1387
Sau96I GGNCC 2 cut(s) 210, 329
ScaI AGTACT 3 cut(s) 506, 631, 1444
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 4 cut(s) 887, 1073, 1300, 1509
SfaNI GCATC 5 cut(s) 78, 892, 1282, 1493, 1646
SfcI CTRYAG 2 cut(s) 617, 1446
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 686, 1529
Sse9I AATT 9 cut(s) 68, 875, 954, 1163, 1377, 1472, 1476, 1517, 1577
SsiI CCGC 4 cut(s) 899, 1010, 1085, 1635
SspI AATATT 2 cut(s) 423, 1555
SspMI CTAG 2 cut(s) 110, 1641
StyD4I CCNGG 4 cut(s) 885, 1071, 1298, 1507
StyI CCWWGG 3 cut(s) 325, 833, 1148
TaaI ACNGT 3 cut(s) 621, 1331, 1442
TaiI ACGT 2 cut(s) 811, 1002
TaqI TCGA 1 cut(s) 1048
TasI AATT 9 cut(s) 68, 875, 954, 1163, 1377, 1472, 1476, 1517, 1577
TatI WGTACW 4 cut(s) 504, 629, 735, 1442
TauI GCSGC 1 cut(s) 1088
TfiI GAWTC 5 cut(s) 538, 1144, 1431, 1512, 1619
Tru1I TTAA 7 cut(s) 123, 668, 813, 1341, 1436, 1475, 1569
Tru9I TTAA 7 cut(s) 123, 668, 813, 1341, 1436, 1475, 1569
TscAI CASTG 4 cut(s) 865, 1099, 1254, 1630
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 4 cut(s) 340, 389, 514, 1028
Tsp45I GTSAC 1 cut(s) 821
TspRI CASTG 4 cut(s) 865, 1099, 1254, 1630
VpaK11BI GGWCC 1 cut(s) 210
VspI ATTAAT 1 cut(s) 1475
XbaI TCTAGA 1 cut(s) 1640
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XmnI GAANNNNTTC 3 cut(s) 767, 1263, 1476
XspI CTAG 2 cut(s) 110, 1641
ZrmI AGTACT 3 cut(s) 506, 631, 1444
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.