Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003382.1

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Reverse (-)

34714 .. 35187

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003382.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgagattcaaaaaagggagcaatgtggaagtcctgaggaaaagggaggtgccttcaggatcttggtgctgtgccaagatcatctgcagtgacggccacaagtatactgttagatatgatggagtagaggctgctaatgatgagaccattgtggagagggtacacagaactgcaattaggccttgccctcctccactggaagttacagagaattgggttcctggtgatgttgttgaggtattcgacaatttttcatggaaaatggccaccatttccgaggtattagctatatactccaaatataccaaaaataccctacatactgctgacagaaaacccacacctcacaacaccatgcccttgtttggtcttctttctttaccttcttcacaactctataccaaaatccctgtcctctatctccgtaacagacagcagacagagagctatcatggtaggcttcaatcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

157

Amino Acids

17.97

Weight (kDa)

9.08

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	2 cut(s)	94, 264
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	10, 464
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	287, 447
AluI	AGCT	2 cut(s)	287, 447
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	3 cut(s)	94, 179, 264
ApeKI	GCWGC	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AsuHPI	GGTGA	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	51, 219
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	201
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	3 cut(s)	96, 181, 266
BshNI	GGYRCC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	96, 181, 266
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	59, 78
BspANI	GGCC	3 cut(s)	96, 181, 266
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	51, 219
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	59, 78
BssNAI	GTATAC	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	62, 81
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	59, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	96, 181, 266
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 194
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	3 cut(s)	255, 355, 452
CviJI	RGCY	7 cut(s)	96, 131, 181, 266, 287, 447, 460
CviKI_1	RGCY	7 cut(s)	96, 131, 181, 266, 287, 447, 460
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	61, 80
DpnII	GATC	2 cut(s)	59, 78
EaeI	YGGCCR	2 cut(s)	94, 264
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	258, 358, 455
FatI	CATG	3 cut(s)	254, 354, 451
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	96, 181, 266
Hin1II	CATG	3 cut(s)	258, 358, 455
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	105, 163
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	34, 57
Hpy8I	GTNNAC	2 cut(s)	105, 163
HpyAV	CCTTC	2 cut(s)	63, 393
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	87, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	258, 358, 455
Kzo9I	GATC	2 cut(s)	59, 78
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	42, 47, 182, 207, 234, 423
Lsp1109I	GCAGC	1 cut(s)	118
MaeIII	GTNAC	3 cut(s)	89, 202, 425
MalI	GATC	2 cut(s)	61, 80
MboI	GATC	2 cut(s)	59, 78
MboII	GAAGA	2 cut(s)	362, 378
MflI	RGATCY	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	174, 211, 247
MluNI	TGGCCA	1 cut(s)	266
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	2 cut(s)	59, 78
NlaIII	CATG	3 cut(s)	258, 358, 455
NlaIV	GGNNCC	2 cut(s)	51, 219
NmuCI	GTSAC	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	51, 219
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	59, 78
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	7 cut(s)	51, 240, 282, 289, 346, 385, 449
SfcI	CTRYAG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	174, 211, 247
SseBI	AGGCCT	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	174, 211, 247
TfiI	GAWTC	1 cut(s)	6
TscAI	CASTG	2 cut(s)	94, 201
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	94, 201
XmiI	GTMKAC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.