pycom15g15870

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005962
Physical Location & Seq
Forward (+)
11068277 .. 11068780
504 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15870.1

Sequence Viewer

Length: 504 bp
ATGCAGGGTGGAAAAGATTTACATGCTTCTCTTTACAACAGAAAAACTGTATTGCCTGATGTGGATGTGGAAAGGAGGAAACCAAATGGTGATGTTGGGCGTGCGTTTTCTGTGAACCTTAAATCGAATGATAGTATTACGTGCTCTGTTGGTAGTTGTAGTATCGATACGAATGATTCCAATAAGTTACCTCCTCCTGTTTCAGCTAGTTCTACTGAAGATTTTGATGATCAGTTTTCTGATGCTGAATCTATTTGTCAATTGGGATATAAGGGAGGAATCTCTCTCCTTCCCGCTAAAGAAGAATTGGCAGCAGAGATCCATAGGTTAGAGTTGCATGCTTACCGTTGCACGATAGGGGCATTACATGCGTCAGGACCTTTAAGTTGGGAACAAGAAGAATTGGTGACAAATCTTCGTCTTTCACTCCATATATCAAATGATGAACATTTAATGGAGCTTAGAAACCTAATTTCTGGAGATACCAGCATTCATATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet ENT

Protein Analysis

168

Amino Acids

18.31

Weight (kDa)

5.16

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENT PF03735 105 - 162 3.6e-13 ENT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 237
AluBI AGCT 2 cut(s) 206, 460
AluI AGCT 2 cut(s) 206, 460
Alw21I GWGCWC 1 cut(s) 146
AlwI GGATC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 101, 418
AvaII GGWCC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 323
BclI TGATCA 1 cut(s) 229
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 165
BseGI GGATG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 229, 318
BspACI CCGC 1 cut(s) 294
BspDI ATCGAT 1 cut(s) 165
BspPI GGATC 1 cut(s) 313
BssMI GATC 2 cut(s) 229, 318
Bst4CI ACNGT 2 cut(s) 49, 347
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 102, 339
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 232, 321
BstMBI GATC 2 cut(s) 229, 318
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 3 cut(s) 26, 341, 371
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 102, 339
Cfr13I GGNCC 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 360
CviAII CATG 3 cut(s) 23, 338, 368
CviJI RGCY 2 cut(s) 206, 460
CviKI_1 RGCY 2 cut(s) 206, 460
DdeI CTNAG 1 cut(s) 461
DpnI GATC 2 cut(s) 231, 320
DpnII GATC 2 cut(s) 229, 318
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 377
FaeI CATG 3 cut(s) 26, 341, 371
FaiI YATR 8 cut(s) 24, 270, 324, 339, 369, 432, 434, 495
FatI CATG 3 cut(s) 22, 337, 367
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 498
HgaI GACGC 1 cut(s) 360
Hin1II CATG 3 cut(s) 26, 341, 371
HinfI GANTC 3 cut(s) 176, 248, 279
HphI GGTGA 2 cut(s) 101, 418
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 241, 500
Hpy188III TCNNGA 2 cut(s) 375, 477
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 49, 347
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 4, 337, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 26, 341, 371
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 229, 318
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 5 cut(s) 69, 210, 360, 462, 499
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 186, 406
MalI GATC 2 cut(s) 231, 320
MboI GATC 2 cut(s) 229, 318
MboII GAAGA 4 cut(s) 230, 314, 407, 410
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 4 cut(s) 260, 305, 401, 471
MnlI CCTC 4 cut(s) 69, 201, 204, 269
MseI TTAA 3 cut(s) 120, 383, 452
MunI CAATTG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 2 cut(s) 229, 318
NlaIII CATG 3 cut(s) 26, 341, 371
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 3 cut(s) 26, 341, 371
PaeI GCATGC 1 cut(s) 341
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 176, 248, 279
PkrI GCNGC 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
PspPI GGNCC 1 cut(s) 377
PspPPI RGGWCCY 1 cut(s) 377
PsuI RGATCY 1 cut(s) 318
SaqAI TTAA 3 cut(s) 120, 383, 452
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 229, 318
Sau96I GGNCC 1 cut(s) 377
SduI GDGCHC 1 cut(s) 146
SetI ASST 8 cut(s) 120, 143, 193, 208, 329, 382, 462, 471
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 377
SphI GCATGC 1 cut(s) 341
Sse9I AATT 4 cut(s) 260, 305, 401, 471
SsiI CCGC 1 cut(s) 294
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 49, 347
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 125, 165
TasI AATT 4 cut(s) 260, 305, 401, 471
TfiI GAWTC 3 cut(s) 176, 248, 279
Tru1I TTAA 3 cut(s) 120, 383, 452
Tru9I TTAA 3 cut(s) 120, 383, 452
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 459, 482
VpaK11BI GGWCC 1 cut(s) 377
XceI RCATGY 3 cut(s) 26, 341, 371
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.