Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276293.1

Orthogroup ID

OG0005962

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 735

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atggcaactatttctgatgttttagggagcaagtactttttggtcaggatagttggatcctgccgggaatataaagttgggaaactggaagttcgagtcagacagttctggcaagatgacaaatgggttgtggttggaaagggttcaagccaatatgagaatggaaagcatggtgcaatttcaactctaaagtacagccaaaaatcatgccttgaagctcagaaagtcaatttccagaaatcccacactgcatcctcgcagaatctgaagagaggatcatcctacttgtattctcaagatgaagcacatggtggaggtactgagaagtttcgagtagttgagaaagaaggcaggtgtcacagagtcattgctagcaacttatctagattagctgaacaggtagatgttgctttgccaagtcagatgctgggtggaaaagaaatacgtgcttctcttaacaacagaacaactgtattgtctgaggttgatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

9.49

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20030 AT5G20030
fragaria_vesca	FvH4_1g03900 FvH4_1g03900
malus_domestica	MD02G1037200.v1.1 MD15G1177400.v1.1
prunus_persica	Prupe.7G238100_v2.0.a1
pyrus_communis	pycom02g03050 pycom15g15870
rosa_chinensis	RchiOBHm_Chr2g0089371
rosa_laevigata	RLG00000016021
rosa_multiflora	Rmu_co8276293.1_g000001 Rmu_sc0000197.1_g000025 Rmu_sc0003382.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152020
rosa_rugosa	Rorug01G0489600 Rorug01G0489700 Rorug01G0489800 Rorug01G0489900 Rorug01G0490000 Rorug01G0490100 Rorug01G0490200
rosa_samantha	Rh2AG045300 Rh2BG043800 Rh2CG045700 Rh2DG045200
rosa_wichuraiana	Rw2G003740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	342
AclWI	GGATC	3 cut(s)	51, 64, 283
AcuI	CTGAAG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	3 cut(s)	35, 194, 319
AgsI	TTSAA	3 cut(s)	147, 183, 215
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	2 cut(s)	218, 392
AluI	AGCT	2 cut(s)	218, 392
AlwI	GGATC	3 cut(s)	51, 64, 283
AlwNI	CAGNNNCTG	2 cut(s)	265, 427
Asp700I	GAANNNNTTC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	65
BfaI	CTAG	2 cut(s)	372, 384
BfuAI	ACCTGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	260, 414
BmtI	GCTAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	251, 278
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	233, 312, 471
BseNI	ACTGG	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	56, 275
BspCNI	CTCAG	3 cut(s)	232, 313, 472
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	342
BspOI	GCTAGC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	51, 64, 283
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	56, 275
Bst4CI	ACNGT	2 cut(s)	105, 472
Bst6I	CTCTTC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	219, 321, 480
BstF5I	GGATG	2 cut(s)	251, 278
BstKTI	GATC	2 cut(s)	59, 278
BstMBI	GATC	2 cut(s)	56, 275
BstSCI	CCNGG	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	251, 278
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	2 cut(s)	265, 427
Csp6I	GTAC	3 cut(s)	34, 193, 318
CviAII	CATG	3 cut(s)	170, 207, 308
CviJI	RGCY	4 cut(s)	150, 198, 218, 392
CviKI_1	RGCY	4 cut(s)	150, 198, 218, 392
CviQI	GTAC	3 cut(s)	34, 193, 318
DdeI	CTNAG	3 cut(s)	219, 321, 480
DpnI	GATC	2 cut(s)	58, 277
DpnII	GATC	2 cut(s)	56, 275
DraIII	CACNNNGTG	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	287
FaeI	CATG	3 cut(s)	173, 210, 311
FaiI	YATR	5 cut(s)	72, 156, 171, 208, 309
FatI	CATG	3 cut(s)	169, 206, 307
FokI	GGATG	2 cut(s)	238, 265
FspBI	CTAG	2 cut(s)	372, 384
GsaI	CCCAGC	1 cut(s)	431
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	3 cut(s)	173, 210, 311
HinfI	GANTC	3 cut(s)	96, 262, 363
HpaII	CCGG	1 cut(s)	64
Hpy188I	TCNGA	6 cut(s)	16, 101, 222, 267, 423, 481
Hpy188III	TCNNGA	4 cut(s)	46, 235, 296, 384
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	105, 472
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	176, 251
HpyF3I	CTNAG	3 cut(s)	219, 321, 480
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	173, 210, 311
Kzo9I	GATC	2 cut(s)	56, 275
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	9 cut(s)	31, 71, 73, 77, 94, 248, 337, 383, 413
LweI	GCATC	2 cut(s)	260, 414
MaeI	CTAG	2 cut(s)	372, 384
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	2 cut(s)	58, 277
MboI	GATC	2 cut(s)	56, 275
MboII	GAAGA	1 cut(s)	280
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	2 cut(s)	177, 229
MlyI	GAGTC	2 cut(s)	105, 372
MmeI	TCCRAC	2 cut(s)	34, 115
MnlI	CCTC	4 cut(s)	265, 266, 308, 475
MroXI	GAANNNNTTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	456
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	56, 275
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	173, 210, 311
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	356
PaqCI	CACCTGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	104, 371
PpsI	GAGTC	2 cut(s)	104, 371
Ppu21I	YACGTR	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	58
PstNI	CAGNNNCTG	2 cut(s)	265, 427
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	3 cut(s)	35, 194, 319
RsaNI	GTAC	3 cut(s)	34, 193, 318
SaqAI	TTAA	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	56, 275
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	2 cut(s)	105, 372
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	7 cut(s)	220, 319, 356, 394, 402, 448, 486
SfaNI	GCATC	2 cut(s)	260, 414
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	177, 229
SspMI	CTAG	2 cut(s)	372, 384
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	105, 472
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	94, 331
TasI	AATT	2 cut(s)	177, 229
TatI	WGTACW	2 cut(s)	33, 192
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	2 cut(s)	372, 384
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.