AT5G20110

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013407
Physical Location & Seq
Reverse (-)
6791360 .. 6793419
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20110.2

Sequence Viewer

Length: 630 bp
ATGAATGAAGAGAGACCCAAAAAGTCGAAGAAGAAAAGTCTCATGAACTTCTACAAATTCTCAATCACTTCGTCGAAACACTCACTCATAAACCCTAAATCCAAACCAAAGATCCCGATCAGTACACCATCAATATCTCAACAAGAAGTAGAAGAAAAACCAATCGTCCAGTCGAATAAAAGTCATCAAAACCATGTGATGAGGGATATATTCGAGTTAGAGACTACTTGTAGTAGAAATAATGAAAGAAAGAAAGGCGGTGGCGCGGCGGAGGAGGGGAGAAAATCGGTGTCTCACGTGGAGAGGGATACGGCGGCGAGGATAGAGGCAGCGGCGGAGATGTTGACGGTGAGGATACTAGCTGCGGACATGCCGGGGTTTATGCAGGCACATGCGTTTAGGTGTGCGAGAATGACTTTAGATAGTTTGGAGAAGTTTAGTTCGAAGCACATGGCTTTCAATCTCAAGAAGGAGTTTGACAAAGGGTATGGACCAGCATGGCATTGCATAGTGGGATCAAGTTTCGGGTCGTTTGTGACACATTCGACAGGTTGTTTTATTTATTTCTCAATGGACAAACTCTACGTTCTCCTCTTCAAAACCAAAGTTCGTCCTGCTTCTCCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

209

Amino Acids

23.63

Weight (kDa)

9.67

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AciI CCGC 7 cut(s) 258, 266, 269, 314, 332, 335, 365
AclWI GGATC 2 cut(s) 106, 523
AcsI RAATTY 1 cut(s) 56
AcvI CACGTG 1 cut(s) 298
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 2 cut(s) 460, 598
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw26I GTCTC 4 cut(s) 7, 44, 215, 297
AlwI GGATC 2 cut(s) 106, 523
ApeKI GCWGC 2 cut(s) 329, 362
ApoI RAATTY 1 cut(s) 56
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 491
BbrPI CACGTG 1 cut(s) 298
BbvI GCAGC 2 cut(s) 341, 349
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 327
BciVI GTATCC 2 cut(s) 301, 348
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 4 cut(s) 7, 44, 215, 297
BfaI CTAG 1 cut(s) 359
BfuI GTATCC 2 cut(s) 301, 348
BisI GCNGC 5 cut(s) 267, 315, 330, 333, 363
BlsI GCNGC 5 cut(s) 268, 316, 331, 334, 364
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 374
BseJI GATNNNNATC 1 cut(s) 116
BseMI GCAATG 1 cut(s) 502
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 287, 581
BseXI GCAGC 2 cut(s) 341, 349
Bsh1236I CGCG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 374
BsmAI GTCTC 4 cut(s) 7, 44, 215, 297
Bso31I GGTCTC 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 443
Bsp143I GATC 3 cut(s) 111, 117, 515
BspACI CCGC 7 cut(s) 258, 266, 269, 314, 332, 335, 365
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 42
BspPI GGATC 2 cut(s) 106, 523
BspT104I TTCGAA 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 3 cut(s) 111, 117, 515
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 2 cut(s) 3, 599
BstBAI YACGTR 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 387
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 114, 120, 518
BstMAI GTCTC 4 cut(s) 7, 44, 215, 297
BstMBI GATC 3 cut(s) 111, 117, 515
BstNSI RCATGY 2 cut(s) 373, 395
BstSCI CCNGG 1 cut(s) 373
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 341, 349
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuI GTATCC 2 cut(s) 301, 348
Cac8I GCNNGC 1 cut(s) 387
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 491
Csp6I GTAC 1 cut(s) 123
CviAII CATG 6 cut(s) 43, 194, 370, 392, 451, 498
CviJI RGCY 2 cut(s) 362, 455
CviKI_1 RGCY 2 cut(s) 362, 455
CviQI GTAC 1 cut(s) 123
DpnI GATC 3 cut(s) 113, 119, 517
DpnII GATC 3 cut(s) 111, 117, 515
Eam1104I CTCTTC 2 cut(s) 3, 599
EarI CTCTTC 2 cut(s) 3, 599
EciI GGCGGA 2 cut(s) 284, 350
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 491
Eco72I CACGTG 1 cut(s) 298
FaeI CATG 6 cut(s) 46, 197, 373, 395, 454, 501
FatI CATG 6 cut(s) 42, 193, 369, 391, 450, 497
Fnu4HI GCNGC 5 cut(s) 267, 315, 330, 333, 363
Fsp4HI GCNGC 5 cut(s) 267, 315, 330, 333, 363
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 265
GluI GCNGC 5 cut(s) 267, 315, 330, 333, 363
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 266
Hin1II CATG 6 cut(s) 46, 197, 373, 395, 454, 501
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 125, 345
Hpy188III TCNNGA 3 cut(s) 43, 115, 466
Hpy8I GTNNAC 2 cut(s) 125, 345
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 297, 585
HpyCH4V TGCA 2 cut(s) 385, 507
HpySE526I ACGT 2 cut(s) 297, 585
Hsp92II CATG 6 cut(s) 46, 197, 373, 395, 454, 501
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 111, 117, 515
LpnPI CCDG 5 cut(s) 182, 371, 387, 507, 534
Lsp1109I GCAGC 2 cut(s) 341, 349
MaeI CTAG 1 cut(s) 359
MaeII ACGT 2 cut(s) 297, 585
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 113, 119, 517
MboI GATC 3 cut(s) 111, 117, 515
MboII GAAGA 5 cut(s) 20, 40, 43, 164, 586
MflI RGATCY 1 cut(s) 111
MluCI AATT 1 cut(s) 56
MnlI CCTC 8 cut(s) 195, 265, 268, 297, 312, 319, 345, 602
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 266
NciI CCSGG 1 cut(s) 375
NdeII GATC 3 cut(s) 111, 117, 515
NlaIII CATG 6 cut(s) 46, 197, 373, 395, 454, 501
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 2 cut(s) 373, 395
NspV TTCGAA 1 cut(s) 443
PagI TCATGA 1 cut(s) 42
PkrI GCNGC 5 cut(s) 268, 316, 331, 334, 364
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 298
PspCI CACGTG 1 cut(s) 298
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 5 cut(s) 267, 315, 330, 333, 363
Sau3AI GATC 3 cut(s) 111, 117, 515
Sau96I GGNCC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 375
SetI ASST 5 cut(s) 300, 364, 404, 553, 588
SfuI TTCGAA 1 cut(s) 443
SinI GGWCC 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 56
SsiI CCGC 7 cut(s) 258, 266, 269, 314, 332, 335, 365
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 300, 588
TaqI TCGA 6 cut(s) 26, 74, 173, 213, 443, 545
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 122
TauI GCSGC 3 cut(s) 269, 317, 335
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 329, 362
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 4 cut(s) 17, 21, 59, 258
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 373, 395
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.