Rw2G003490

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013407
Physical Location & Seq
Reverse (-)
3239368 .. 3240715
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G003490.1

Sequence Viewer

Length: 588 bp
ATGAACACCCCTTTTCATGACCATGAGAAGAAGCAGAAGAAGAGTTTCATGTCCTCGTACAAACCCAGCCCCGGACGTCACCTAAAGCCGGACTCTAAGCCTAACATGGTGGATAAATACCCGGTTTTACGTAGCTGGTTCAGTTTGTCCAGGAAGTCGAAAACACGTCAAGATGTTCTAGATCAATTTGAGCATGCTCAGAGTCAAAAAGAAGAACCAAATAAGCAAGTTGGAGTGGTGGTGGAGTCAGCAAGAAAGTCGGTGTCTCATGTCGAAAGCAACTTGGTATCAGTAGCTTCGTTTCTTCAAGTGAAGGTCTTGGTCTCAGACATGCCCGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCTAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCCAAACACATGGCTTACAACCTCAAAAAGGAGTTTGATAAAATGTATGGACCGGCATGGCATTGCATCGTGGGCTCAGGTTTCGGGTCATTCGTGACCCATTCGACTGGTTGTTTCCTTTATTTCTCAATGGAGAAGCTATGCATTTTGTTGTTCAGAACTAAAATCCAGAAAGCTGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

195

Amino Acids

22.47

Weight (kDa)

9.71

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 104 - 188 3.1e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 79
AciI CCGC 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 71, 88, 430
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 308
AjiI CACGTC 1 cut(s) 167
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 4 cut(s) 135, 296, 541, 578
AluI AGCT 4 cut(s) 135, 296, 541, 578
Alw26I GTCTC 2 cut(s) 270, 328
Aor51HI AGCGCT 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 3 cut(s) 72, 122, 336
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 3 cut(s) 72, 122, 336
BcoDI GTCTC 2 cut(s) 270, 328
BfaI CTAG 2 cut(s) 179, 369
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 4 cut(s) 72, 122, 151, 336
Bme18I GGWCC 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 4 cut(s) 72, 122, 151, 336
BmsI GCATC 1 cut(s) 477
Bpu10I CCTNAGC 2 cut(s) 478, 579
BpuMI CCSGG 3 cut(s) 72, 122, 336
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 88, 430
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 71, 88, 430
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 4 cut(s) 212, 339, 492, 570
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 1 cut(s) 375
BseYI CCCAGC 1 cut(s) 65
BsiSI CCGG 5 cut(s) 72, 89, 122, 336, 455
BslI CCNNNNNNNGG 3 cut(s) 71, 88, 430
BsmAI GTCTC 2 cut(s) 270, 328
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 361
BspCNI CTCAG 4 cut(s) 211, 338, 491, 571
BspHI TCATGA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 5 cut(s) 96, 198, 325, 478, 579
BstENI CCTNNNNNAGG 1 cut(s) 428
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 270, 328
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 2 cut(s) 197, 334
BstSCI CCNGG 4 cut(s) 70, 120, 149, 334
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 375
BstXI CCANNNNNNTGG 2 cut(s) 412, 509
BtrI CACGTC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 58
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 5 cut(s) 96, 198, 325, 478, 579
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco105I TACGTA 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 479
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 452
Eco47III AGCGCT 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 479
Fnu4HI GCNGC 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 2 cut(s) 179, 369
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 364
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 5 cut(s) 72, 89, 122, 336, 455
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 3 cut(s) 92, 202, 245
HpaII CCGG 5 cut(s) 72, 89, 122, 336, 455
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 201, 328, 560
Hpy188III TCNNGA 5 cut(s) 17, 170, 179, 496, 571
HpyAV CCTTC 2 cut(s) 307, 367
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 76, 130, 166
HpyCH4V TGCA 3 cut(s) 346, 468, 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 5 cut(s) 96, 198, 325, 478, 579
HpySE526I ACGT 3 cut(s) 76, 130, 166
Hsp92I GRCGYC 1 cut(s) 76
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 477
MaeI CTAG 2 cut(s) 179, 369
MaeII ACGT 3 cut(s) 76, 130, 166
MaeIII GTNAC 2 cut(s) 77, 496
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 6 cut(s) 40, 49, 52, 224, 296, 384
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 1 cut(s) 185
MlyI GAGTC 3 cut(s) 86, 211, 254
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 64, 434, 574
Mph1103I ATGCAT 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 5 cut(s) 72, 89, 122, 336, 455
MspR9I CCNGG 4 cut(s) 72, 122, 151, 336
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 474
NciI CCSGG 3 cut(s) 72, 122, 336
NdeII GATC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 77, 496
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 2 cut(s) 197, 334
PaeI GCATGC 1 cut(s) 197
PagI TCATGA 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 3 cut(s) 86, 210, 253
PpsI GAGTC 3 cut(s) 86, 210, 253
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 452
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 3 cut(s) 86, 211, 254
ScrFI CCNGG 4 cut(s) 72, 122, 151, 336
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 1 cut(s) 477
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 131
SphI GCATGC 1 cut(s) 197
Sse9I AATT 1 cut(s) 185
SsiI CCGC 1 cut(s) 361
SspMI CTAG 2 cut(s) 179, 369
StyD4I CCNGG 4 cut(s) 70, 120, 149, 334
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 79, 133, 169
TaqI TCGA 3 cut(s) 158, 273, 506
TasI AATT 1 cut(s) 185
TseFI GTSAC 2 cut(s) 77, 496
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 2 cut(s) 77, 496
TspDTI ATGAA 4 cut(s) 5, 17, 37, 331
VpaK11BI GGWCC 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 428
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 2 cut(s) 197, 334
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 2 cut(s) 179, 369
ZraI GACGTC 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.