pycom02g02850

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013407
Physical Location & Seq
Forward (+)
1803742 .. 1805361
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02850.2

Sequence Viewer

Length: 666 bp
ATGGCGAGTAGCACTCCCAGCCATGAGAAGCAGAAGAGGGGAGGAGCCATGTCCACGTACCAATACAATCCGAGCAGCGGCCGTCACTTAAAGCCGGAATCCAAGCCTGTTACTACAATGGCGGATAAGACCCATGCTTTACGAAACTGGTTCAATTTATCCATGAGAAAACCAAAACCTAGTCCGGAAATTGATGTAGTCCATTGTGACGAGAAGAGGAAGCAGGGCGGGAATGTTACTTATAGTTTAGATGGTAATTTTGGAAATGGAAGACGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGGGAAGTGATGGTGGTTGAGGCGGCCAGGAAGTCGGTGTCTCATGTGGAAACAAATTTGGCATCAGTGGCTTCATTTCTTCAAGTGAAGGTGTTGGCCTCTGATATGCCGGGATTCATGCAAGTTCATGCCTTCCGCAGCGCCAGACGAACTTATGACAGCTTGGAGAAGTTTAGCTCAAAACACATGGCTTATAACTTAAAAAAGGAGTTTGATAAATTGTACGGGCCGGCATGGCATTGTATCGTGGGCTCGGGTTTCGGGTCGTTCGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGAAGCTGTGCATTCTCTTGTTTAGAACAAAAATCCAGAAAGCTGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

222

Amino Acids

24.31

Weight (kDa)

9.7

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 7 cut(s) 78, 122, 228, 288, 294, 326, 439
AcoI YGGCCR 2 cut(s) 79, 327
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 59, 527
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 154, 386, 585, 609
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 4 cut(s) 465, 480, 619, 656
AluI AGCT 4 cut(s) 465, 480, 619, 656
Alw26I GTCTC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 556
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 4 cut(s) 79, 327, 399, 530
ApeKI GCWGC 2 cut(s) 75, 441
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 530
AsuC2I CCSGG 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 556
BanII GRGCYC 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 87, 453
BccI CCATC 2 cut(s) 245, 307
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 447
BglI GCCNNNNNGGC 1 cut(s) 538
BisI GCNGC 4 cut(s) 76, 79, 327, 442
BlsI GCNGC 4 cut(s) 77, 80, 328, 443
Bme1390I CCNGG 2 cut(s) 331, 414
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 331, 414
BmsI GCATC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 605, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 152
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 6 cut(s) 57, 291, 294, 297, 312, 315
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 87, 453
BseYI CCCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 81, 329, 401, 532
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 4 cut(s) 95, 185, 413, 533
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 4 cut(s) 81, 329, 401, 532
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 557
Bsp13I TCCGGA 1 cut(s) 184
BspACI CCGC 7 cut(s) 78, 122, 228, 288, 294, 326, 439
BspANI GGCC 4 cut(s) 81, 329, 401, 532
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 331
Bst6I CTCTTC 2 cut(s) 29, 209
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 534
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstMAI GTCTC 1 cut(s) 348
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 18, 371, 538
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 329, 412
BstV1I GCAGC 2 cut(s) 87, 453
BstV2I GAAGAC 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 4 cut(s) 81, 329, 401, 532
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 58, 526
CviAII CATG 9 cut(s) 23, 49, 134, 163, 347, 421, 431, 490, 537
CviQI GTAC 2 cut(s) 58, 526
EaeI YGGCCR 2 cut(s) 79, 327
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 29, 209
EarI CTCTTC 2 cut(s) 29, 209
EciI GGCGGA 3 cut(s) 137, 303, 309
EclXI CGGCCG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 557
Eco52I CGGCCG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 557
FaeI CATG 9 cut(s) 26, 52, 137, 166, 350, 424, 434, 493, 540
FatI CATG 9 cut(s) 22, 48, 133, 162, 346, 420, 430, 489, 536
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 4 cut(s) 76, 79, 327, 442
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 4 cut(s) 76, 79, 327, 442
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 445
GluI GCNGC 4 cut(s) 76, 79, 327, 442
GsaI CCCAGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 4 cut(s) 81, 329, 401, 532
HapII CCGG 4 cut(s) 95, 185, 413, 533
HhaI GCGC 1 cut(s) 446
Hin1II CATG 9 cut(s) 26, 52, 137, 166, 350, 424, 434, 493, 540
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 2 cut(s) 98, 417
HpaII CCGG 4 cut(s) 95, 185, 413, 533
Hpy166II GTNNAC 2 cut(s) 54, 661
Hpy188I TCNGA 2 cut(s) 72, 406
Hpy188III TCNNGA 3 cut(s) 185, 574, 649
Hpy8I GTNNAC 2 cut(s) 54, 661
HpyAV CCTTC 2 cut(s) 385, 445
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 424, 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 371, 538
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 9 cut(s) 26, 52, 137, 166, 350, 424, 434, 493, 540
HspAI GCGC 1 cut(s) 444
Kpn2I TCCGGA 1 cut(s) 184
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 87, 453
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 5 cut(s) 83, 109, 206, 235, 574
MboII GAAGA 4 cut(s) 46, 226, 282, 374
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 5 cut(s) 154, 189, 256, 358, 521
MroI TCCGGA 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 532
MseI TTAA 2 cut(s) 89, 503
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 4 cut(s) 95, 185, 413, 533
MspR9I CCNGG 2 cut(s) 331, 414
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 18, 371, 538
NaeI GCCGGC 1 cut(s) 534
NciI CCSGG 1 cut(s) 414
NgoMIV GCCGGC 1 cut(s) 532
NlaIII CATG 9 cut(s) 26, 52, 137, 166, 350, 424, 434, 493, 540
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 83, 206, 574
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PctI GAATGC 1 cut(s) 624
PdiI GCCGGC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 98, 417
PkrI GCNGC 4 cut(s) 77, 80, 328, 443
Ppu21I YACGTR 1 cut(s) 57
PsiI TTATAA 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 530
RsaI GTAC 2 cut(s) 59, 527
RsaNI GTAC 2 cut(s) 58, 526
SaqAI TTAA 2 cut(s) 89, 503
SatI GCNGC 4 cut(s) 76, 79, 327, 442
Sau96I GGNCC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 331, 414
SduI GDGCHC 1 cut(s) 557
SetI ASST 8 cut(s) 59, 181, 396, 467, 482, 592, 621, 658
SfaNI GCATC 1 cut(s) 374
Sse9I AATT 5 cut(s) 154, 189, 256, 358, 521
SsiI CCGC 7 cut(s) 78, 122, 228, 288, 294, 326, 439
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 329, 412
TaiI ACGT 1 cut(s) 59
TasI AATT 5 cut(s) 154, 189, 256, 358, 521
TauI GCSGC 2 cut(s) 81, 329
TfiI GAWTC 2 cut(s) 98, 417
Tru1I TTAA 2 cut(s) 89, 503
Tru9I TTAA 2 cut(s) 89, 503
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 3 cut(s) 83, 206, 574
TseI GCWGC 2 cut(s) 75, 441
Tsp45I GTSAC 3 cut(s) 83, 206, 574
TspDTI ATGAA 3 cut(s) 366, 409, 419
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 358
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.