MD02G1034900.v1.1

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013407
Physical Location & Seq
Forward (+)
2672129 .. 2673915
1787 bp
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UTR
Exon/CDS
Intron
MD02G1034900.v1.1.491

Sequence Viewer

Length: 666 bp
ATGGCGAGTAGCACTCCCAGCCATGAGAAGCAGAAGAGGGGAGGAGCCATGTCCACGTACAAATACAATCCGAGCAGCGGCCGTCACTTAAAGCCGGAATCCAAGCCTGTTACTGCAATGGCGGATAAGACCCATGCTTTACGAAACTGGTTCAATTTATCCATGAGAAAACCAAAACCTAGTCCGGAAATTGATGTAGTCCATTGTGACGAGAAGAGGAAGCAGGGCGGGAATGTTACTTATAGTTTAGATGGTAATTTTGGAAATGGAAGACGAGGAGGCGGAGGCGGAGGCAGAGGAGGAGGGGAAGTGATGGTGGTTGAGGTGGCCAGGAAGTCGGTGTCTCATGTGGAAACAAATTTGGCATCAGTGGCTTCATTTCTTCAAGTGAAGGTGTTGGCCTCGGACATGCCTGGGTTCATGCAAGTTCATGCCTTCCGCAGCGCCAGACGAACTTATGACAGCTTGGAGAAGTTTAGCTCAAAACACATGGCTTACAACTTAAAAAAGGAGTTTGATAAATTGTACGGGCCGGCATGGCATTGCATCGTGGGCTCGGGGTTCGGGTCGTTCGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGAAACTGTGCATTCTCTTGTTTAGAACTAAAATCCAGAAAGCTGTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

222

Amino Acids

24.42

Weight (kDa)

9.8

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 130 - 214 1.2e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 6 cut(s) 78, 122, 228, 282, 288, 439
AcoI YGGCCR 2 cut(s) 79, 327
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 59, 527
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 154, 386, 585, 609
AjnI CCWGG 2 cut(s) 329, 412
AluBI AGCT 3 cut(s) 465, 480, 656
AluI AGCT 3 cut(s) 465, 480, 656
Alw26I GTCTC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 556
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 4 cut(s) 79, 327, 399, 530
ApeKI GCWGC 2 cut(s) 75, 441
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 556
BalI TGGCCA 1 cut(s) 329
BanII GRGCYC 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 87, 453
BccI CCATC 2 cut(s) 245, 307
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 331, 414
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 447
BglI GCCNNNNNGGC 1 cut(s) 538
BisI GCNGC 3 cut(s) 76, 79, 442
BlsI GCNGC 3 cut(s) 77, 80, 443
Bme1390I CCNGG 2 cut(s) 331, 414
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 331, 414
BmsI GCATC 2 cut(s) 374, 555
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 402, 413
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 605, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 2 cut(s) 123, 541
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 2 cut(s) 331, 414
BseDI CCNNGG 2 cut(s) 402, 413
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 2 cut(s) 123, 541
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 4 cut(s) 57, 291, 312, 315
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 87, 453
BseYI CCCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 81, 329, 401, 532
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 3 cut(s) 95, 185, 533
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 4 cut(s) 81, 329, 401, 532
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 557
Bsp13I TCCGGA 1 cut(s) 184
BspACI CCGC 6 cut(s) 78, 122, 228, 282, 288, 439
BspANI GGCC 4 cut(s) 81, 329, 401, 532
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 123, 541
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 2 cut(s) 402, 413
Bst2UI CCWGG 2 cut(s) 331, 414
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 2 cut(s) 29, 209
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 534
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstMAI GTCTC 1 cut(s) 348
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 18, 371, 538, 552
BstNI CCWGG 2 cut(s) 331, 414
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 329, 412
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 87, 453
BstV2I GAAGAC 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 4 cut(s) 81, 329, 401, 532
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 58, 526
CviQI GTAC 2 cut(s) 58, 526
EaeI YGGCCR 2 cut(s) 79, 327
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 29, 209
EarI CTCTTC 2 cut(s) 29, 209
EciI GGCGGA 3 cut(s) 137, 297, 303
EclXI CGGCCG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 557
Eco52I CGGCCG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 329, 412
EcoT38I GRGCYC 1 cut(s) 557
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 76, 79, 442
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 3 cut(s) 76, 79, 442
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 445
GluI GCNGC 3 cut(s) 76, 79, 442
GsaI CCCAGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 4 cut(s) 81, 329, 401, 532
HapII CCGG 3 cut(s) 95, 185, 533
HhaI GCGC 1 cut(s) 446
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 1 cut(s) 98
HpaII CCGG 3 cut(s) 95, 185, 533
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 72, 406
Hpy188III TCNNGA 3 cut(s) 185, 574, 649
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 385, 445
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 116, 424, 546, 624
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 371, 538, 552
HpySE526I ACGT 1 cut(s) 56
HspAI GCGC 1 cut(s) 444
Kpn2I TCCGGA 1 cut(s) 184
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 87, 453
LweI GCATC 2 cut(s) 374, 555
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 5 cut(s) 83, 109, 206, 235, 574
MboII GAAGA 4 cut(s) 46, 226, 282, 374
MhlI GDGCHC 1 cut(s) 557
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 5 cut(s) 154, 189, 256, 358, 521
MluNI TGGCCA 1 cut(s) 329
Mox20I TGGCCA 1 cut(s) 329
MroI TCCGGA 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 532
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 89, 503
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 3 cut(s) 95, 185, 533
MspR9I CCNGG 2 cut(s) 331, 414
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 331, 414
MwoI GCNNNNNNNGC 4 cut(s) 18, 371, 538, 552
NaeI GCCGGC 1 cut(s) 534
NgoMIV GCCGGC 1 cut(s) 532
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 83, 206, 574
NspI RCATGY 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PctI GAATGC 1 cut(s) 624
PdiI GCCGGC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 77, 80, 443
Ppu21I YACGTR 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 329, 412
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 2 cut(s) 329, 412
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 530
RsaI GTAC 2 cut(s) 59, 527
RsaNI GTAC 2 cut(s) 58, 526
SaqAI TTAA 2 cut(s) 89, 503
SatI GCNGC 3 cut(s) 76, 79, 442
Sau96I GGNCC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 331, 414
SduI GDGCHC 1 cut(s) 557
SetI ASST 8 cut(s) 59, 181, 327, 396, 467, 482, 592, 658
SfaNI GCATC 2 cut(s) 374, 555
SfcI CTRYAG 1 cut(s) 657
Sse9I AATT 5 cut(s) 154, 189, 256, 358, 521
SsiI CCGC 6 cut(s) 78, 122, 228, 282, 288, 439
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 329, 412
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 1 cut(s) 59
TasI AATT 5 cut(s) 154, 189, 256, 358, 521
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 89, 503
Tru9I TTAA 2 cut(s) 89, 503
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 3 cut(s) 83, 206, 574
TseI GCWGC 2 cut(s) 75, 441
Tsp45I GTSAC 3 cut(s) 83, 206, 574
TspDTI ATGAA 3 cut(s) 366, 409, 419
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 358
XceI RCATGY 1 cut(s) 412
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.