Rorug01G0487300

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013407
Physical Location & Seq
Reverse (-)
57307459 .. 57308631
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0487300.1

Sequence Viewer

Length: 939 bp
ATGTCAGACAGTAATGGCCAGCCTCCGCGACGCCACCGCATCGGCTACGCCTTCCCGCCGAAGAAAGAGCAGACCTTCATCCAACCGTCGCTGATCGCCCACGCCGGACAACACGGCATCGATCTGGTCCCCGTCGATGCCTCCAAAGCCTTGACCCAGCAGGGCCCCTTCGACTGCATCATCCACAAGCTCTACGACGACGACTGGAATCAGCAATTGAAGGAATACTCGTCTCTCTATCCCCGCACCGTCATCCTCGATCCGCCCGAGTCCATCGCCCGCCTCCACAACCGGGTGTCGATGCTCGACGTCATCAACGCCGCCTTCAAAGCCCCTCGAGTCGAGAATGTCGGGGTCCCCAAGCAGGTCCTGATCCACGACCCGGCCGAACTGGAATCCGATCTGGGATTGAAATTTCCGGTCATCGCAAAGCCTGTGCTGGCCAATGGCAGCGCCAAGTCGCACCAAATGTCTATGGTTTTCAGCGGCGAGGGGTTGAAGAAGGTCGAGACCCCCATTTTGCTGCAGGAGTTTGTCAACCACGGCGGCACCATCTTCAAGGTCTACGTCATCGGGGATTACACCGAGTGCGTCAAGCGTAGGTCGCTGCCCGACATCTCCGACGAGCAGCGCACCAAATTGGCAGGGGTTGTGGTGCCTTTCTCCCAGATTTCCAATGAAGAAGTTGACATTGAGGGTGTTGAGATGCCGCCACCTGGGTTTGTGGAGGAGCTGGCCAAGGGGATTTGCGACGGCCTCAAACTCAATTTCTTCAACTTCGATGTCATCAGGGATTCCAATGACAAGCATAGCTATTATGTTATTGACATCAATTACTTTCCTGGCTATGCCAAACTCCACAACTTCGAGCACCTTTTGACGGACTTTTTCTTGGCTGTACTTTCCAACAAGTCCATGTCTCAGCTTGAACAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

312

Amino Acids

35.02

Weight (kDa)

5.57

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ins134_P3_kin_N PF17927 13 - 92 4.5e-29 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin PF05770 115 - 298 6.7e-64 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 355
AccB1I GGYRCC 2 cut(s) 548, 655
AccI GTMKAC 1 cut(s) 564
AccII CGCG 1 cut(s) 28
AclWI GGATC 2 cut(s) 254, 367
AcoI YGGCCR 4 cut(s) 16, 384, 441, 735
AcsI RAATTY 1 cut(s) 413
AcyI GRCGYC 2 cut(s) 31, 309
AdeI CACNNNGTG 1 cut(s) 588
AfaI GTAC 1 cut(s) 900
AfiI CCNNNNNNNGG 5 cut(s) 292, 364, 382, 716, 880
AgsI TTSAA 7 cut(s) 220, 328, 412, 499, 559, 775, 929
AjnI CCWGG 2 cut(s) 715, 841
AluBI AGCT 4 cut(s) 190, 733, 813, 925
AluI AGCT 4 cut(s) 190, 733, 813, 925
Alw21I GWGCWC 1 cut(s) 873
Alw26I GTCTC 3 cut(s) 237, 503, 924
AlwI GGATC 2 cut(s) 254, 367
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 2 cut(s) 266, 336
AoxI GGCC 6 cut(s) 16, 163, 384, 441, 735, 754
ApaI GGGCCC 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 450, 523, 607, 628
ApoI RAATTY 1 cut(s) 413
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
AspLEI GCGC 2 cut(s) 455, 633
AspS9I GGNCC 5 cut(s) 127, 163, 164, 355, 367
AsuC2I CCSGG 2 cut(s) 293, 383
AvaI CYCGRG 2 cut(s) 266, 336
AvaII GGWCC 3 cut(s) 127, 355, 367
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 3 cut(s) 18, 443, 737
BanI GGYRCC 2 cut(s) 548, 655
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 873
BbvI GCAGC 4 cut(s) 462, 510, 594, 640
BccI CCATC 2 cut(s) 281, 560
BceAI ACGGC 3 cut(s) 130, 559, 769
BciT130I CCWGG 2 cut(s) 717, 843
BcnI CCSGG 2 cut(s) 293, 383
BcoDI GTCTC 3 cut(s) 237, 503, 924
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 8 cut(s) 321, 451, 487, 524, 547, 608, 629, 710
BlsI GCNGC 8 cut(s) 322, 452, 488, 525, 548, 609, 630, 711
Bme1390I CCNGG 4 cut(s) 293, 383, 717, 843
Bme18I GGWCC 3 cut(s) 127, 355, 367
BmeT110I CYCGRG 2 cut(s) 266, 336
BmgT120I GGNCC 5 cut(s) 127, 163, 164, 355, 367
BmiI GGNNCC 7 cut(s) 129, 165, 166, 356, 357, 550, 657
BmrFI CCNGG 4 cut(s) 293, 383, 717, 843
BmsI GCATC 6 cut(s) 48, 126, 127, 186, 291, 696
BpuMI CCSGG 2 cut(s) 293, 383
Bsa29I ATCGAT 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 31, 309
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 541, 716, 738
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 364, 382, 716, 880
Bse1I ACTGG 2 cut(s) 209, 396
BseBI CCWGG 2 cut(s) 717, 843
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 541, 716, 738
BseGI GGATG 3 cut(s) 78, 180, 252
BseLI CCNNNNNNNGG 5 cut(s) 292, 364, 382, 716, 880
BseMII CTCAG 1 cut(s) 935
BseNI ACTGG 2 cut(s) 209, 396
BseRI GAGGAG 1 cut(s) 743
BseSI GKGCMC 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 4 cut(s) 462, 510, 594, 640
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 28
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 6 cut(s) 18, 165, 386, 443, 737, 756
BshNI GGYRCC 2 cut(s) 548, 655
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 873
BsiHKCI CYCGRG 2 cut(s) 266, 336
BsiSI CCGG 4 cut(s) 105, 292, 383, 419
BslFI GGGAC 2 cut(s) 113, 341
BslI CCNNNNNNNGG 5 cut(s) 292, 364, 382, 716, 880
BsmAI GTCTC 3 cut(s) 237, 503, 924
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 113, 341
BsnI GGCC 6 cut(s) 18, 165, 386, 443, 737, 756
Bso31I GGTCTC 1 cut(s) 503
BsoBI CYCGRG 2 cut(s) 266, 336
Bsp120I GGGCCC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 167, 873
Bsp143I GATC 5 cut(s) 93, 121, 259, 372, 400
BspANI GGCC 6 cut(s) 18, 165, 386, 443, 737, 756
BspCNI CTCAG 1 cut(s) 934
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 7 cut(s) 129, 165, 166, 356, 357, 550, 657
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 2 cut(s) 254, 367
BspT107I GGYRCC 2 cut(s) 548, 655
BspTNI GGTCTC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 209, 396
BssECI CCNNGG 3 cut(s) 541, 716, 738
BssMI GATC 5 cut(s) 93, 121, 259, 372, 400
BssNI GRCGYC 2 cut(s) 31, 309
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 717, 843
Bst4CI ACNGT 3 cut(s) 11, 87, 250
BstACI GRCGYC 2 cut(s) 31, 309
BstC8I GCNNGC 4 cut(s) 20, 280, 441, 735
BstDEI CTNAG 1 cut(s) 921
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 3 cut(s) 78, 180, 252
BstFNI CGCG 1 cut(s) 28
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 2 cut(s) 455, 633
BstKTI GATC 5 cut(s) 96, 124, 262, 375, 403
BstMAI GTCTC 3 cut(s) 237, 503, 924
BstMBI GATC 5 cut(s) 93, 121, 259, 372, 400
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 3 cut(s) 146, 329, 604
BstNI CCWGG 2 cut(s) 717, 843
BstSCI CCNGG 4 cut(s) 291, 381, 715, 841
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 462, 510, 594, 640
BstZI CGGCCG 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 6 cut(s) 18, 165, 386, 443, 737, 756
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 541
BtgZI GCGATG 2 cut(s) 259, 409
BtsCI GGATG 3 cut(s) 78, 180, 252
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 4 cut(s) 20, 280, 441, 735
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 2 cut(s) 455, 633
Cfr13I GGNCC 5 cut(s) 127, 163, 164, 355, 367
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 2 cut(s) 39, 580
Csp6I GTAC 1 cut(s) 899
CviAII CATG 1 cut(s) 916
CviQI GTAC 1 cut(s) 899
DdeI CTNAG 1 cut(s) 921
DpnI GATC 5 cut(s) 95, 123, 261, 374, 402
DpnII GATC 5 cut(s) 93, 121, 259, 372, 400
DraIII CACNNNGTG 1 cut(s) 588
EaeI YGGCCR 4 cut(s) 16, 384, 441, 735
EagI CGGCCG 1 cut(s) 384
EciI GGCGGA 1 cut(s) 252
EclXI CGGCCG 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 3 cut(s) 127, 355, 367
Eco52I CGGCCG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 266, 336
EcoO109I RGGNCCY 4 cut(s) 163, 164, 355, 367
EcoRII CCWGG 2 cut(s) 715, 841
EcoT14I CCWWGG 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 1 cut(s) 919
FaiI YATR 5 cut(s) 476, 810, 819, 849, 917
FaqI GGGAC 2 cut(s) 113, 341
FatI CATG 1 cut(s) 915
FauI CCCGC 3 cut(s) 63, 251, 287
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 8 cut(s) 321, 451, 487, 524, 547, 608, 629, 710
FokI GGATG 3 cut(s) 65, 167, 239
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 8 cut(s) 321, 451, 487, 524, 547, 608, 629, 710
GlaI GCGC 2 cut(s) 454, 632
GluI GCNGC 8 cut(s) 321, 451, 487, 524, 547, 608, 629, 710
GsaI CCCAGC 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 6 cut(s) 18, 165, 386, 443, 737, 756
HapII CCGG 4 cut(s) 105, 292, 383, 419
HgaI GACGC 2 cut(s) 39, 580
HhaI GCGC 2 cut(s) 455, 633
Hin1I GRCGYC 2 cut(s) 31, 309
Hin1II CATG 1 cut(s) 919
Hin6I GCGC 2 cut(s) 453, 631
HinP1I GCGC 2 cut(s) 453, 631
HincII GTYRAC 2 cut(s) 538, 688
HindII GTYRAC 2 cut(s) 538, 688
HinfI GANTC 5 cut(s) 208, 269, 339, 395, 794
HpaII CCGG 4 cut(s) 105, 292, 383, 419
Hpy166II GTNNAC 3 cut(s) 538, 565, 688
Hpy188I TCNGA 3 cut(s) 7, 400, 622
Hpy188III TCNNGA 3 cut(s) 343, 370, 508
Hpy8I GTNNAC 3 cut(s) 538, 565, 688
Hpy99I CGWCG 8 cut(s) 33, 91, 137, 200, 203, 311, 626, 755
HpyAV CCTTC 6 cut(s) 61, 85, 178, 214, 334, 496
HpyCH4III ACNGT 3 cut(s) 11, 87, 250
HpyCH4IV ACGT 2 cut(s) 309, 567
HpyCH4V TGCA 2 cut(s) 177, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 329, 604
HpyF3I CTNAG 1 cut(s) 921
HpySE526I ACGT 2 cut(s) 309, 567
Hsp92I GRCGYC 2 cut(s) 31, 309
Hsp92II CATG 1 cut(s) 919
HspAI GCGC 2 cut(s) 453, 631
KflI GGGWCCC 1 cut(s) 355
Kzo9I GATC 5 cut(s) 93, 121, 259, 372, 400
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 4 cut(s) 462, 510, 594, 640
LweI GCATC 6 cut(s) 48, 126, 127, 186, 291, 696
MaeII ACGT 2 cut(s) 309, 567
MalI GATC 5 cut(s) 95, 123, 261, 374, 402
MboI GATC 5 cut(s) 93, 121, 259, 372, 400
MboII GAAGA 5 cut(s) 73, 511, 547, 692, 763
MfeI CAATTG 1 cut(s) 215
MhlI GDGCHC 2 cut(s) 167, 873
MlsI TGGCCA 3 cut(s) 18, 443, 737
MluCI AATT 5 cut(s) 215, 413, 638, 766, 832
MluNI TGGCCA 3 cut(s) 18, 443, 737
MlyI GAGTC 2 cut(s) 278, 348
MmeI TCCRAC 3 cut(s) 106, 645, 930
MnlI CCTC 9 cut(s) 33, 151, 266, 293, 345, 484, 688, 721, 767
Mox20I TGGCCA 3 cut(s) 18, 443, 737
MscI TGGCCA 3 cut(s) 18, 443, 737
Msp20I TGGCCA 3 cut(s) 18, 443, 737
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 4 cut(s) 105, 292, 383, 419
MspR9I CCNGG 4 cut(s) 293, 383, 717, 843
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 2 cut(s) 717, 843
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 3 cut(s) 146, 329, 604
NciI CCSGG 2 cut(s) 293, 383
NdeII GATC 5 cut(s) 93, 121, 259, 372, 400
NlaIII CATG 1 cut(s) 919
NlaIV GGNNCC 7 cut(s) 129, 165, 166, 356, 357, 550, 657
PaeR7I CTCGAG 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 384
PfeI GAWTC 3 cut(s) 208, 395, 794
PkrI GCNGC 8 cut(s) 322, 452, 488, 525, 548, 609, 630, 711
PleI GAGTC 2 cut(s) 277, 347
PpsI GAGTC 2 cut(s) 277, 347
PpuMI RGGWCCY 2 cut(s) 355, 367
Psp5II RGGWCCY 2 cut(s) 355, 367
Psp6I CCWGG 2 cut(s) 715, 841
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 2 cut(s) 715, 841
PspN4I GGNNCC 7 cut(s) 129, 165, 166, 356, 357, 550, 657
PspOMI GGGCCC 1 cut(s) 163
PspPI GGNCC 5 cut(s) 127, 163, 164, 355, 367
PspPPI RGGWCCY 2 cut(s) 355, 367
PspXI VCTCGAGB 1 cut(s) 336
PstI CTGCAG 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 370
RsaI GTAC 1 cut(s) 900
RsaNI GTAC 1 cut(s) 899
SatI GCNGC 8 cut(s) 321, 451, 487, 524, 547, 608, 629, 710
Sau3AI GATC 5 cut(s) 93, 121, 259, 372, 400
Sau96I GGNCC 5 cut(s) 127, 163, 164, 355, 367
SchI GAGTC 2 cut(s) 278, 348
ScrFI CCNGG 4 cut(s) 293, 383, 717, 843
SduI GDGCHC 2 cut(s) 167, 873
SfaNI GCATC 6 cut(s) 48, 126, 127, 186, 291, 696
SfcI CTRYAG 1 cut(s) 524
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 3 cut(s) 127, 355, 367
SlaI CTCGAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 5 cut(s) 215, 413, 638, 766, 832
StyD4I CCNGG 4 cut(s) 291, 381, 715, 841
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 3 cut(s) 11, 87, 250
TaiI ACGT 2 cut(s) 312, 570
TasI AATT 5 cut(s) 215, 413, 638, 766, 832
TatI WGTACW 1 cut(s) 898
TauI GCSGC 4 cut(s) 323, 489, 549, 712
TfiI GAWTC 3 cut(s) 208, 395, 794
TseI GCWGC 4 cut(s) 450, 523, 607, 628
TspDTI ATGAA 2 cut(s) 67, 693
TspGWI ACGGA 1 cut(s) 896
VpaK11BI GGWCC 3 cut(s) 127, 355, 367
XapI RAATTY 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 564
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.