Rh2CG042800

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013407
Physical Location & Seq
Forward (+)
3412036 .. 3413874
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG042800.1

Sequence Viewer

Length: 723 bp
ATGAATCAATCAATTTATACCCCTTTCCTTTGTGGCCATGATTCCACACAGTCCCCTTTTCCTCATTATATATATAGTTTTGTACCACAACAAACAAATCAACTAAAGAAAGAAAGCCAGAGAGTCCGAGTCGCAGAAATGAACACCCCTTTTCATGACCATGAGAAGAAGCAGAAGAAGAGTTTCATGTCCTCGTACAAACCCAGCCCCGGTCGTCACCTAAAGCCGGACTCTAAGCCTAACATGGTGGATAAATACCCGGTTTTACGTAGCTGGTTCAGTTTGTCCAGGAAGTCGAAAACACGTCAAGAAGTTCTAGATCAATTTGAGCATGCTCAGAGTCAAAGAGAAGAACCAAATAAGCAAGTTGGAGTGGTGGAGTCAGCAAGAAAGTCGGTGTCTCATGTCGAAAGCAACTTGGTATCAGTAGCTTCGTTTCTTCAAGTGAAGGTCTTGGTCTCAGACATGCCCGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCTAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCCAAACACATGGCTTACAACCTCAAAAAGGAGTTTGATAAAATGTATGGACCGGCATGGCATTGCATCGTGGGCTCAGGTTTCGGGTCATTCGTGACCCATTCGACTGGTTGTTTCCTGTATTTCTCAATGGAGAAGCTATGCATTTTGTTGTTCAGAACTAAAATCCAGAAAGCTGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

240

Amino Acids

27.8

Weight (kDa)

9.64

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 149 - 233 4.9e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 34
AfaI GTAC 2 cut(s) 84, 197
AfeI AGCGCT 1 cut(s) 502
AfiI CCNNNNNNNGG 3 cut(s) 209, 226, 565
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 443
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 273, 431, 676, 713
AluI AGCT 4 cut(s) 273, 431, 676, 713
Alw26I GTCTC 2 cut(s) 405, 463
Aor51HI AGCGCT 1 cut(s) 502
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 3 cut(s) 210, 260, 471
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 36
BanII GRGCYC 1 cut(s) 614
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 1 cut(s) 510
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 3 cut(s) 210, 260, 471
BcoDI GTCTC 2 cut(s) 405, 463
BfaI CTAG 2 cut(s) 317, 504
BfoI RGCGCY 1 cut(s) 504
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
Bme1390I CCNGG 4 cut(s) 210, 260, 289, 471
Bme18I GGWCC 1 cut(s) 587
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 587
BmrFI CCNGG 4 cut(s) 210, 260, 289, 471
BmsI GCATC 1 cut(s) 612
Bpu10I CCTNAGC 2 cut(s) 613, 714
BpuMI CCSGG 3 cut(s) 210, 260, 471
BsaAI YACGTR 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 226, 565
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 208
BseLI CCNNNNNNNGG 3 cut(s) 209, 226, 565
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 4 cut(s) 350, 474, 627, 705
BseNI ACTGG 1 cut(s) 649
BseXI GCAGC 1 cut(s) 510
BseYI CCCAGC 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 5 cut(s) 210, 227, 260, 471, 590
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 209, 226, 565
BsmAI GTCTC 2 cut(s) 405, 463
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 1 cut(s) 496
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 4 cut(s) 349, 473, 626, 706
BspHI TCATGA 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 598
BsrFI RCCGGY 1 cut(s) 589
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 51, 521
Bst6I CTCTTC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 5 cut(s) 234, 336, 460, 613, 714
BstENI CCTNNNNNAGG 1 cut(s) 563
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 405, 463
BstMBI GATC 1 cut(s) 319
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 2 cut(s) 335, 469
BstSCI CCNGG 4 cut(s) 208, 258, 287, 469
BstSNI TACGTA 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 510
BstXI CCANNNNNNTGG 2 cut(s) 547, 644
BsuRI GGCC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 83, 196
CviQI GTAC 2 cut(s) 83, 196
DdeI CTNAG 5 cut(s) 234, 336, 460, 613, 714
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco105I TACGTA 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 587
Eco47III AGCGCT 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 614
FaqI GGGAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 499
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 2 cut(s) 317, 504
GlaI GCGC 1 cut(s) 502
GluI GCNGC 1 cut(s) 499
GsaI CCCAGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 1 cut(s) 36
HapII CCGG 5 cut(s) 210, 227, 260, 471, 590
HhaI GCGC 1 cut(s) 503
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 7 cut(s) 4, 41, 123, 129, 230, 340, 380
HpaII CCGG 5 cut(s) 210, 227, 260, 471, 590
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 4 cut(s) 128, 339, 463, 695
Hpy188III TCNNGA 5 cut(s) 155, 308, 317, 631, 706
HpyAV CCTTC 2 cut(s) 442, 502
HpyCH4III ACNGT 2 cut(s) 51, 521
HpyCH4IV ACGT 2 cut(s) 268, 304
HpyCH4V TGCA 3 cut(s) 481, 603, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpyF3I CTNAG 5 cut(s) 234, 336, 460, 613, 714
HpySE526I ACGT 2 cut(s) 268, 304
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 1 cut(s) 612
MaeI CTAG 2 cut(s) 317, 504
MaeII ACGT 2 cut(s) 268, 304
MaeIII GTNAC 2 cut(s) 215, 631
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 6 cut(s) 178, 187, 190, 362, 431, 519
MhlI GDGCHC 1 cut(s) 614
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 2 cut(s) 12, 323
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 5 cut(s) 132, 138, 224, 349, 389
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 4 cut(s) 72, 202, 569, 709
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 683
MroXI GAANNNNTTC 1 cut(s) 182
MscI TGGCCA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 5 cut(s) 210, 227, 260, 471, 590
MspR9I CCNGG 4 cut(s) 210, 260, 289, 471
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 609
NciI CCSGG 3 cut(s) 210, 260, 471
NdeII GATC 1 cut(s) 319
NmuCI GTSAC 2 cut(s) 215, 631
NsiI ATGCAT 1 cut(s) 683
NspI RCATGY 2 cut(s) 335, 469
PaeI GCATGC 1 cut(s) 335
PagI TCATGA 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 4, 41
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 1 cut(s) 500
PleI GAGTC 5 cut(s) 131, 137, 224, 348, 388
PpsI GAGTC 5 cut(s) 131, 137, 224, 348, 388
Ppu21I YACGTR 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 1 cut(s) 587
RsaI GTAC 2 cut(s) 84, 197
RsaNI GTAC 2 cut(s) 83, 196
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 1 cut(s) 499
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 5 cut(s) 132, 138, 224, 349, 389
ScrFI CCNGG 4 cut(s) 210, 260, 289, 471
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 1 cut(s) 612
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 159
SnaBI TACGTA 1 cut(s) 269
SphI GCATGC 1 cut(s) 335
Sse9I AATT 2 cut(s) 12, 323
SsiI CCGC 1 cut(s) 496
SspMI CTAG 2 cut(s) 317, 504
StyD4I CCNGG 4 cut(s) 208, 258, 287, 469
TaaI ACNGT 2 cut(s) 51, 521
TaiI ACGT 2 cut(s) 271, 307
TaqI TCGA 3 cut(s) 296, 408, 641
TasI AATT 2 cut(s) 12, 323
TfiI GAWTC 2 cut(s) 4, 41
TseFI GTSAC 2 cut(s) 215, 631
TseI GCWGC 1 cut(s) 498
Tsp45I GTSAC 2 cut(s) 215, 631
TspDTI ATGAA 5 cut(s) 17, 143, 155, 175, 466
VpaK11BI GGWCC 1 cut(s) 587
XagI CCTNNNNNAGG 1 cut(s) 563
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 335, 469
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 317, 504
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.