MD00G1106900.v1.1

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0013407
Physical Location & Seq
Forward (+)
22444097 .. 22445922
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1106900.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGCGAGTAGCACTCCCAGCCATGAGAAGCAGAAGAGAGGAGGAGCCATGTCCACGTACAAATACAATCCGAGCAGCGGCCGTCACTTAAAGCCGGAATCCAGGCCTGTTACTACAATGGCGGATAAAACCCATGCTTTACGAAACTGGTTCAATTCATCCATGAGAAAACCAAAACCTCGTCCAGAAATTGATGTACTCCATTGTGACGAGAAGAGGCAGCAGGGCGGGAATGAAACTTATAGTTTAGATGGTAATTTTGGAAATGGAAGACGAGGAGGGGGAGGCGGAGGAGGTGGAGAAGTGATGGTGGCGAGGAAGTCTGTGTCTCATGTGGAAACTAATTTGGCATCAGTGGCTTCATTTCTTCAAGTGAAGGTGTTGGTCTCGGACATGCCTGGGTTCATGCAAGTTCATGCCTTTCGTAGCGCTAGACGAACTTATGACAGCTTGGAGAAGTTTAGCACAAGACACATGGCTTATAACTTAAAAAAGGAGTTTGATAAATTGTACGGGCCGGCATGGCATTGCATAGTGGGCTCGGGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGAAACTGTGCATTCTCTTGTTTAGAACTAAAATCCAGAAAGCAGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

217

Amino Acids

24.08

Weight (kDa)

9.81

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 125 - 209 9.7e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AccI GTMKAC 1 cut(s) 645
AciI CCGC 4 cut(s) 78, 122, 228, 288
AcoI YGGCCR 1 cut(s) 79
AfaI GTAC 3 cut(s) 59, 198, 512
AfeI AGCGCT 1 cut(s) 430
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 154, 371, 570, 594
AjnI CCWGG 2 cut(s) 101, 397
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 333, 391
Ama87I CYCGRG 1 cut(s) 541
Aor51HI AGCGCT 1 cut(s) 430
AoxI GGCC 3 cut(s) 79, 104, 515
ApeKI GCWGC 2 cut(s) 75, 220
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 541
BanII GRGCYC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 87, 232
BccI CCATC 2 cut(s) 245, 301
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 103, 399
BcoDI GTCTC 2 cut(s) 333, 391
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 432
BglI GCCNNNNNGGC 1 cut(s) 523
BisI GCNGC 3 cut(s) 76, 79, 221
BlsI GCNGC 3 cut(s) 77, 80, 222
Bme1390I CCNGG 2 cut(s) 103, 399
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 103, 399
BmsI GCATC 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 2 cut(s) 103, 399
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 526
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 4 cut(s) 54, 57, 291, 306
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 87, 232
BseYI CCCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 81, 106, 517
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 2 cut(s) 95, 518
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 333, 391
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 3 cut(s) 81, 106, 517
Bso31I GGTCTC 1 cut(s) 391
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 542
BspACI CCGC 4 cut(s) 78, 122, 228, 288
BspANI GGCC 3 cut(s) 81, 106, 517
BspLI GGNNCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 103, 399
Bst4CI ACNGT 1 cut(s) 606
Bst6I CTCTTC 2 cut(s) 29, 209
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 519
BstF5I GGATG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstMAI GTCTC 2 cut(s) 333, 391
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 18, 356, 523, 537
BstNI CCWGG 2 cut(s) 103, 399
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 101, 397
BstV1I GCAGC 2 cut(s) 87, 232
BstV2I GAAGAC 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 3 cut(s) 81, 106, 517
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 515
Csp6I GTAC 3 cut(s) 58, 197, 511
CviQI GTAC 3 cut(s) 58, 197, 511
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 29, 209
EarI CTCTTC 2 cut(s) 29, 209
EciI GGCGGA 2 cut(s) 137, 303
EclXI CGGCCG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 391
Eco47III AGCGCT 1 cut(s) 430
Eco52I CGGCCG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 101, 397
EcoT38I GRGCYC 1 cut(s) 542
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 76, 79, 221
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 76, 79, 221
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 430
GluI GCNGC 3 cut(s) 76, 79, 221
GsaI CCCAGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 3 cut(s) 81, 106, 517
HapII CCGG 2 cut(s) 95, 518
HhaI GCGC 1 cut(s) 431
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HinfI GANTC 1 cut(s) 98
HpaII CCGG 2 cut(s) 95, 518
Hpy166II GTNNAC 2 cut(s) 54, 646
Hpy188I TCNGA 2 cut(s) 72, 391
Hpy188III TCNNGA 2 cut(s) 185, 634
Hpy8I GTNNAC 2 cut(s) 54, 646
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 606
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 409, 531, 609
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 356, 523, 537
HpySE526I ACGT 1 cut(s) 56
HspAI GCGC 1 cut(s) 429
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 87, 232
LweI GCATC 1 cut(s) 359
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 4 cut(s) 83, 109, 206, 559
MboII GAAGA 4 cut(s) 46, 226, 282, 359
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 5 cut(s) 154, 189, 256, 343, 506
MroNI GCCGGC 1 cut(s) 517
MseI TTAA 2 cut(s) 89, 488
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 2 cut(s) 95, 518
MspR9I CCNGG 2 cut(s) 103, 399
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 2 cut(s) 103, 399
MwoI GCNNNNNNNGC 4 cut(s) 18, 356, 523, 537
NaeI GCCGGC 1 cut(s) 519
NgoMIV GCCGGC 1 cut(s) 517
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 83, 206, 559
NspI RCATGY 1 cut(s) 397
PceI AGGCCT 1 cut(s) 106
PctI GAATGC 1 cut(s) 609
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 77, 80, 222
Ppu21I YACGTR 1 cut(s) 57
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 101, 397
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 2 cut(s) 101, 397
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 515
RsaI GTAC 3 cut(s) 59, 198, 512
RsaNI GTAC 3 cut(s) 58, 197, 511
SaqAI TTAA 2 cut(s) 89, 488
SatI GCNGC 3 cut(s) 76, 79, 221
Sau96I GGNCC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 103, 399
SduI GDGCHC 1 cut(s) 542
SetI ASST 6 cut(s) 59, 181, 298, 381, 452, 577
SfaNI GCATC 1 cut(s) 359
Sse9I AATT 5 cut(s) 154, 189, 256, 343, 506
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 78, 122, 228, 288
SspMI CTAG 1 cut(s) 432
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 101, 397
TaaI ACNGT 1 cut(s) 606
TaiI ACGT 1 cut(s) 59
TasI AATT 5 cut(s) 154, 189, 256, 343, 506
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 89, 488
Tru9I TTAA 2 cut(s) 89, 488
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 3 cut(s) 83, 206, 559
TseI GCWGC 2 cut(s) 75, 220
Tsp45I GTSAC 3 cut(s) 83, 206, 559
TspDTI ATGAA 5 cut(s) 147, 249, 351, 394, 404
TspRI CASTG 1 cut(s) 360
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.