FvH4_1g03560

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013407
Physical Location & Seq
Forward (+)
1947027 .. 1948988
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03560.t1

Sequence Viewer

Length: 597 bp
ATGAACACCCCCTTTCATGACCATGACAAGAAGCAGAAGAAGGGTTTCATGTCCTCGTACAAACCCAGCCCCGGACGTCACCTGAAGCCGGATTCTAAGCCTGACATGGTAGATAAGTACCCGGTTTTACGTAGCTGGTTCAGTTTATCCAGGAAGTCGAAAACACGTCAAGAAGTAGTAGTAGATCAGTTGGAGCATGCTGATGATCAGAGTCAAAGAGAAGAACCAGATAAGAAAGTTGTAGTGTTGGTGGAAGCTTCAAGAAAGTCGGTTTCTCATGTCGAAACCAACTTGGCATCAGTGGCTTCGTTTCTGCAAGTGAAGGTCTTGGTTTCAGACATGCCTGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCCAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCCAAACACATGGCTTACAACCTCAAAAAGGAGTTTGATAAAACGTATGGACCGGCATGGCATTGCATCGTGGGATCCGGTTTCGGGTCGTTTGTGACGCATTCGACAGGTTGCTTCCTATATTTCTCAATGGAGAAGCTATGCATTTTGTTGTTCAGAACCAAAATCCAGAAAGCTGCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

199

Amino Acids

22.71

Weight (kDa)

9.57

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 107 - 191 1.8e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 79
AciI CCGC 2 cut(s) 370, 590
AclWI GGATC 2 cut(s) 480, 493
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 2 cut(s) 59, 119
AfiI CCNNNNNNNGG 4 cut(s) 71, 88, 439, 495
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 261
AjiI CACGTC 1 cut(s) 167
AjnI CCWGG 2 cut(s) 149, 343
AluBI AGCT 4 cut(s) 135, 257, 550, 587
AluI AGCT 4 cut(s) 135, 257, 550, 587
AlwI GGATC 2 cut(s) 480, 493
ApeKI GCWGC 2 cut(s) 372, 587
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 2 cut(s) 72, 122
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 384, 574
BciT130I CCWGG 2 cut(s) 151, 345
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 2 cut(s) 72, 122
BfoI RGCGCY 1 cut(s) 378
BisI GCNGC 2 cut(s) 373, 588
BlsI GCNGC 2 cut(s) 374, 589
Bme1390I CCNGG 4 cut(s) 72, 122, 151, 345
Bme18I GGWCC 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 4 cut(s) 72, 122, 151, 345
BmsI GCATC 2 cut(s) 305, 486
BpuMI CCSGG 2 cut(s) 72, 122
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 88, 439, 495
Bse118I RCCGGY 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 2 cut(s) 151, 345
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 4 cut(s) 71, 88, 439, 495
BseMI GCAATG 1 cut(s) 472
BseXI GCAGC 2 cut(s) 384, 574
BseYI CCCAGC 1 cut(s) 65
BsiSI CCGG 5 cut(s) 72, 89, 122, 464, 489
BslI CCNNNNNNNGG 4 cut(s) 71, 88, 439, 495
BsmI GAATGC 1 cut(s) 511
Bsp143I GATC 3 cut(s) 184, 205, 485
BspACI CCGC 2 cut(s) 370, 590
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 487
BspPI GGATC 2 cut(s) 480, 493
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 184, 205, 485
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 151, 345
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 437
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 3 cut(s) 187, 208, 488
BstMBI GATC 3 cut(s) 184, 205, 485
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 2 cut(s) 151, 345
BstNSI RCATGY 2 cut(s) 200, 343
BstSCI CCNGG 4 cut(s) 70, 120, 149, 343
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 384, 574
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 1 cut(s) 485
BtrI CACGTC 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 461
CseI GACGC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 58, 118
CviQI GTAC 2 cut(s) 58, 118
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 186, 207, 487
DpnII GATC 3 cut(s) 184, 205, 485
Eco105I TACGTA 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 149, 343
EcoT22I ATGCAT 1 cut(s) 557
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 373, 588
Fsp4HI GCNGC 2 cut(s) 373, 588
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 373, 588
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 378
HapII CCGG 5 cut(s) 72, 89, 122, 464, 489
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 92, 211
HpaII CCGG 5 cut(s) 72, 89, 122, 464, 489
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 210, 337, 569
Hpy188III TCNNGA 4 cut(s) 17, 170, 261, 580
HpyAV CCTTC 3 cut(s) 34, 316, 376
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 4 cut(s) 76, 130, 166, 455
HpyCH4V TGCA 4 cut(s) 316, 355, 477, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 4 cut(s) 76, 130, 166, 455
Hsp92I GRCGYC 1 cut(s) 76
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 184, 205, 485
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 2 cut(s) 384, 574
LweI GCATC 2 cut(s) 305, 486
MaeII ACGT 4 cut(s) 76, 130, 166, 455
MaeIII GTNAC 2 cut(s) 77, 505
MalI GATC 3 cut(s) 186, 207, 487
MboI GATC 3 cut(s) 184, 205, 485
MboII GAAGA 3 cut(s) 49, 233, 393
MflI RGATCY 1 cut(s) 485
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 2 cut(s) 64, 443
Mph1103I ATGCAT 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 44
MslI CAYNNNNRTG 2 cut(s) 21, 201
MspI CCGG 5 cut(s) 72, 89, 122, 464, 489
MspR9I CCNGG 4 cut(s) 72, 122, 151, 345
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 2 cut(s) 151, 345
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 2 cut(s) 72, 122
NdeII GATC 3 cut(s) 184, 205, 485
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 2 cut(s) 77, 505
NsiI ATGCAT 1 cut(s) 557
NspI RCATGY 2 cut(s) 200, 343
PaeI GCATGC 1 cut(s) 200
PagI TCATGA 1 cut(s) 16
PctI GAATGC 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 2 cut(s) 374, 589
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 149, 343
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 2 cut(s) 149, 343
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 2 cut(s) 59, 119
RsaNI GTAC 2 cut(s) 58, 118
RseI CAYNNNNRTG 2 cut(s) 21, 201
SatI GCNGC 2 cut(s) 373, 588
Sau3AI GATC 3 cut(s) 184, 205, 485
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 4 cut(s) 72, 122, 151, 345
SfaNI GCATC 2 cut(s) 305, 486
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 21, 201
SnaBI TACGTA 1 cut(s) 131
SphI GCATGC 1 cut(s) 200
SsiI CCGC 2 cut(s) 370, 590
StyD4I CCNGG 4 cut(s) 70, 120, 149, 343
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 4 cut(s) 79, 133, 169, 458
TaqI TCGA 3 cut(s) 158, 282, 515
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 2 cut(s) 77, 505
TseI GCWGC 2 cut(s) 372, 587
Tsp45I GTSAC 2 cut(s) 77, 505
TspDTI ATGAA 4 cut(s) 5, 17, 37, 340
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 437
XceI RCATGY 2 cut(s) 200, 343
XmnI GAANNNNTTC 1 cut(s) 44
ZraI GACGTC 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.