Rh2AG042700

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013407
Physical Location & Seq
Forward (+)
3327317 .. 3329201
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG042700.1

Sequence Viewer

Length: 441 bp
ATGAACACCCCTTTTCATGACCATGAGAAGAAGCAGAAGAAGAGTTTCATGTCCTCGTACAAACCCAGCCCCGGACGTCACCTAAAGCCGGACTCTAAGCCTAACATGGTGGATAAATACCCGGTTTTACGTAGCTGGTTCAGTTTGTCCAGGAAGTCGAAAACACGTCAAGATGTTCTAGATCAATTTGAGCATGCTCAGAGTCAAAGAGAAGAACCAAATAAGCAAGTTGGAGTGGTGGTGGAGTCAGCAAGAAAGTCGGTGTCTCATGTCGAAAGCAACTTGGTATCAGTAGCTTCGTTTCTTCAAGTGAAGGTCTTGGTCTCAGACATGCCCGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCTAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCCAAACACATGGCTTACAACCTCAAAAAGGTACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

146

Amino Acids

16.95

Weight (kDa)

10.11

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 79
AciI CCGC 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 2 cut(s) 59, 435
AfeI AGCGCT 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 71, 88, 430
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 308
AjiI CACGTC 1 cut(s) 167
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 135, 296
AluI AGCT 2 cut(s) 135, 296
Alw26I GTCTC 2 cut(s) 270, 328
Aor51HI AGCGCT 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 368
AsuC2I CCSGG 3 cut(s) 72, 122, 336
AsuHPI GGTGA 1 cut(s) 71
BbvI GCAGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 3 cut(s) 72, 122, 336
BcoDI GTCTC 2 cut(s) 270, 328
BfaI CTAG 2 cut(s) 179, 369
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 4 cut(s) 72, 122, 151, 336
BmgBI CACGTC 1 cut(s) 167
BmrFI CCNGG 4 cut(s) 72, 122, 151, 336
BpuMI CCSGG 3 cut(s) 72, 122, 336
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 88, 430
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 71, 88, 430
BseMII CTCAG 2 cut(s) 212, 339
BseXI GCAGC 1 cut(s) 375
BseYI CCCAGC 1 cut(s) 65
BsiSI CCGG 4 cut(s) 72, 89, 122, 336
BslI CCNNNNNNNGG 3 cut(s) 71, 88, 430
BsmAI GTCTC 2 cut(s) 270, 328
Bso31I GGTCTC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 361
BspCNI CTCAG 2 cut(s) 211, 338
BspHI TCATGA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 96, 198, 325
BstENI CCTNNNNNAGG 1 cut(s) 428
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 270, 328
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 2 cut(s) 197, 334
BstSCI CCNGG 4 cut(s) 70, 120, 149, 334
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 375
BstXI CCANNNNNNTGG 1 cut(s) 412
BtrI CACGTC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 58, 434
CviJI RGCY 8 cut(s) 69, 88, 100, 135, 296, 339, 402, 416
CviKI_1 RGCY 8 cut(s) 69, 88, 100, 135, 296, 339, 402, 416
CviQI GTAC 2 cut(s) 58, 434
DdeI CTNAG 3 cut(s) 96, 198, 325
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco105I TACGTA 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 364
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 2 cut(s) 179, 369
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 364
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 4 cut(s) 72, 89, 122, 336
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 3 cut(s) 92, 202, 245
HpaII CCGG 4 cut(s) 72, 89, 122, 336
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 201, 328
Hpy188III TCNNGA 3 cut(s) 17, 170, 179
HpyAV CCTTC 2 cut(s) 307, 367
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 76, 130, 166
HpyCH4V TGCA 1 cut(s) 346
HpyF3I CTNAG 3 cut(s) 96, 198, 325
HpySE526I ACGT 3 cut(s) 76, 130, 166
Hsp92I GRCGYC 1 cut(s) 76
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 79, 85, 102, 121, 135, 136, 163, 349
Lsp1109I GCAGC 1 cut(s) 375
MaeI CTAG 2 cut(s) 179, 369
MaeII ACGT 3 cut(s) 76, 130, 166
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 6 cut(s) 40, 49, 52, 224, 296, 384
MluCI AATT 1 cut(s) 185
MlyI GAGTC 3 cut(s) 86, 211, 254
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 2 cut(s) 64, 434
MroXI GAANNNNTTC 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 4 cut(s) 72, 89, 122, 336
MspR9I CCNGG 4 cut(s) 72, 122, 151, 336
MvaI CCWGG 1 cut(s) 151
NciI CCSGG 3 cut(s) 72, 122, 336
NdeII GATC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 2 cut(s) 197, 334
PaeI GCATGC 1 cut(s) 197
PagI TCATGA 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 3 cut(s) 86, 210, 253
PpsI GAGTC 3 cut(s) 86, 210, 253
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 149
RsaI GTAC 2 cut(s) 59, 435
RsaNI GTAC 2 cut(s) 58, 434
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 3 cut(s) 86, 211, 254
ScrFI CCNGG 4 cut(s) 72, 122, 151, 336
SmiMI CAYNNNNRTG 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 131
SphI GCATGC 1 cut(s) 197
Sse9I AATT 1 cut(s) 185
SsiI CCGC 1 cut(s) 361
SspMI CTAG 2 cut(s) 179, 369
StyD4I CCNGG 4 cut(s) 70, 120, 149, 334
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 79, 133, 169
TaqI TCGA 2 cut(s) 158, 273
TasI AATT 1 cut(s) 185
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 5, 17, 37, 331
XagI CCTNNNNNAGG 1 cut(s) 428
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 2 cut(s) 197, 334
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 2 cut(s) 179, 369
ZraI GACGTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.