RchiOBHm_Chr2g0089081

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013407
Physical Location & Seq
Forward (+)
3398637 .. 3399963
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46438

Sequence Viewer

Length: 588 bp
ATGAACACCCCTTTTCATGACCATGAGAAGAAGCAGAAGAAGAGTTTCATGTCCTCGTACAAACCCAGCCCCGGACGTCACCTAAAGCCGGACTCTAAGCCTAACATGGTGGATAAATACCCGGTTTTACGTAGCTGGTTCAGTTTGTCCAGGAAGTCGAAAACACGTCAAGATGTTCTAGATCAATTTGAGCACGCTCAGATTCAAAGAGAAGAACCAAATAAGCAAGTTGGAGTGGTGGCGGAGTCAGCAAGAAAGTCGGTGTCTCATGTCGAAAGCAACTTGGTATCAGTAGCTTCGTTTCTTCAAGTGAAGGTCTTGGTCTCAGACATGCCCGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCTAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCCAAACACATGGCTTACAACCTCAAAAAGGAGTTTGATAAAATGTATGGACCGGCATGGCATTGCATCGTGGGCTCAGGTTTCGGGTCATTCGTGACCCATTCGACTGGTTGTTTCCTTTATTTCTCAATGGAGAAGCTATGCATTTTGTTGTTCAGAACTAAAATCCAGAAAGCTGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

195

Amino Acids

22.5

Weight (kDa)

9.73

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 104 - 188 3.1e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 79
AciI CCGC 2 cut(s) 242, 361
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 71, 88, 430
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 206, 308
AjiI CACGTC 1 cut(s) 167
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 4 cut(s) 135, 296, 541, 578
AluI AGCT 4 cut(s) 135, 296, 541, 578
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 270, 328
Aor51HI AGCGCT 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 3 cut(s) 72, 122, 336
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 3 cut(s) 72, 122, 336
BcoDI GTCTC 2 cut(s) 270, 328
BfaI CTAG 2 cut(s) 179, 369
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 4 cut(s) 72, 122, 151, 336
Bme18I GGWCC 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 4 cut(s) 72, 122, 151, 336
BmsI GCATC 1 cut(s) 477
Bpu10I CCTNAGC 2 cut(s) 478, 579
BpuMI CCSGG 3 cut(s) 72, 122, 336
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 88, 430
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 71, 88, 430
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 4 cut(s) 212, 339, 492, 570
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 1 cut(s) 375
BseYI CCCAGC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 5 cut(s) 72, 89, 122, 336, 455
BslI CCNNNNNNNGG 3 cut(s) 71, 88, 430
BsmAI GTCTC 2 cut(s) 270, 328
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 195, 479
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 2 cut(s) 242, 361
BspCNI CTCAG 4 cut(s) 211, 338, 491, 571
BspHI TCATGA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 5 cut(s) 96, 198, 325, 478, 579
BstENI CCTNNNNNAGG 1 cut(s) 428
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 270, 328
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 248, 474
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 4 cut(s) 70, 120, 149, 334
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 375
BstXI CCANNNNNNTGG 2 cut(s) 412, 509
BtrI CACGTC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 58
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 5 cut(s) 96, 198, 325, 478, 579
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 1 cut(s) 257
Eco105I TACGTA 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 479
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 452
Eco47III AGCGCT 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 479
Fnu4HI GCNGC 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 2 cut(s) 179, 369
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 364
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 5 cut(s) 72, 89, 122, 336, 455
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 3 cut(s) 92, 202, 245
HpaII CCGG 5 cut(s) 72, 89, 122, 336, 455
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 201, 328, 560
Hpy188III TCNNGA 5 cut(s) 17, 170, 179, 496, 571
HpyAV CCTTC 2 cut(s) 307, 367
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 76, 130, 166
HpyCH4V TGCA 3 cut(s) 346, 468, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 474
HpyF3I CTNAG 5 cut(s) 96, 198, 325, 478, 579
HpySE526I ACGT 3 cut(s) 76, 130, 166
Hsp92I GRCGYC 1 cut(s) 76
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 477
MaeI CTAG 2 cut(s) 179, 369
MaeII ACGT 3 cut(s) 76, 130, 166
MaeIII GTNAC 2 cut(s) 77, 496
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 6 cut(s) 40, 49, 52, 224, 296, 384
MhlI GDGCHC 2 cut(s) 195, 479
MluCI AATT 1 cut(s) 185
MlyI GAGTC 2 cut(s) 86, 254
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 64, 434, 574
Mph1103I ATGCAT 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 5 cut(s) 72, 89, 122, 336, 455
MspR9I CCNGG 4 cut(s) 72, 122, 151, 336
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 248, 474
NciI CCSGG 3 cut(s) 72, 122, 336
NdeII GATC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 77, 496
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 334
PagI TCATGA 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 2 cut(s) 86, 253
PpsI GAGTC 2 cut(s) 86, 253
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 452
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 2 cut(s) 86, 254
ScrFI CCNGG 4 cut(s) 72, 122, 151, 336
SduI GDGCHC 2 cut(s) 195, 479
SfaNI GCATC 1 cut(s) 477
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 131
Sse9I AATT 1 cut(s) 185
SsiI CCGC 2 cut(s) 242, 361
SspMI CTAG 2 cut(s) 179, 369
StyD4I CCNGG 4 cut(s) 70, 120, 149, 334
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 79, 133, 169
TaqI TCGA 3 cut(s) 158, 273, 506
TasI AATT 1 cut(s) 185
TfiI GAWTC 1 cut(s) 202
TseFI GTSAC 2 cut(s) 77, 496
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 2 cut(s) 77, 496
TspDTI ATGAA 4 cut(s) 5, 17, 37, 331
VpaK11BI GGWCC 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 428
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 2 cut(s) 179, 369
ZraI GACGTC 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.