pycom15g15730

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013407
Physical Location & Seq
Forward (+)
10948399 .. 10950025
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15730.1

Sequence Viewer

Length: 654 bp
ATGGCGAGTAGCACTCCCAGCCATGAGAAGCAGAAGAGAGGAGGAGCCATGTCCACGTACAAATACAATCCGAGCAGCGGCCGTCACTTAAAGCCGGAATCCAAGCCTGTTACTACAATGGCGGATAAAACACATGCTTTACGAAACTGGTTCAATTTATCCATGAGAAAACCAAAACCTCGTCCAGAAACTGATGTACTCCATTGTGACGAGAAGAGGCAGCAGGGCGGGAATGAAACTTATAGTTTAGATGGTAATTTTGGAAATGGAAGACGAGGAGGGGGAGGCGGAGGAGGTGGAGGAGAAGTGGTGGGGGCGAGGAAGTCTGTGTCTCATGTGGAAACTAATTTGGCATCAGTGGCTTCATTTCTTCAAGTGAAGGTGTTGGTCTCGGACATGCCTGGGTTCATGCAAGTTCACGCCTTTCGTAGCGCTAGACGAACTTATGACAGCTTGGAGAAGTTTAGCTCAAGACACATGGCTTATAACTTAAAAAAGGAGTTCGATAAGTTGTACGGGCCGGCATGGCATTGCATAGTGGGCTCGGGTTTCGGGTCGTTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGAAACTGTGCATTCTCTTGTTTAGAACTAAAATCCAGAAAGCAGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

218

Amino Acids

24.03

Weight (kDa)

9.79

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 126 - 210 7.6e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AccI GTMKAC 1 cut(s) 648
AciI CCGC 4 cut(s) 78, 122, 228, 288
AcoI YGGCCR 1 cut(s) 79
AfaI GTAC 3 cut(s) 59, 198, 515
AfeI AGCGCT 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 154, 374, 573, 597
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 2 cut(s) 453, 468
AluI AGCT 2 cut(s) 453, 468
Alw26I GTCTC 2 cut(s) 336, 394
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 544
Aor51HI AGCGCT 1 cut(s) 433
AoxI GGCC 2 cut(s) 79, 518
ApeKI GCWGC 2 cut(s) 75, 220
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 544
BanII GRGCYC 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 87, 232
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 336, 394
BfaI CTAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 76, 79, 221
BlsI GCNGC 3 cut(s) 77, 80, 222
Bme1390I CCNGG 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 401
BsaXI ACNNNNNCTCC 6 cut(s) 291, 294, 321, 324, 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 529
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 5 cut(s) 54, 57, 291, 306, 315
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 87, 232
BseYI CCCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 81, 520
BsiEI CGRYCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 2 cut(s) 95, 521
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 336, 394
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 2 cut(s) 81, 520
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 545
BspACI CCGC 4 cut(s) 78, 122, 228, 288
BspANI GGCC 2 cut(s) 81, 520
BspLI GGNNCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 2 cut(s) 29, 209
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 522
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 1 cut(s) 434
BstMAI GTCTC 2 cut(s) 336, 394
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 18, 359, 526, 540
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 137, 400
BstSCI CCNGG 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 87, 232
BstV2I GAAGAC 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 2 cut(s) 81, 520
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 518
Csp6I GTAC 3 cut(s) 58, 197, 514
CviAII CATG 9 cut(s) 23, 49, 134, 163, 335, 397, 409, 478, 525
CviQI GTAC 3 cut(s) 58, 197, 514
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 29, 209
EarI CTCTTC 2 cut(s) 29, 209
EciI GGCGGA 2 cut(s) 137, 303
EclXI CGGCCG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 545
Eco31I GGTCTC 1 cut(s) 394
Eco47III AGCGCT 1 cut(s) 433
Eco52I CGGCCG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 545
FaeI CATG 9 cut(s) 26, 52, 137, 166, 338, 400, 412, 481, 528
FatI CATG 9 cut(s) 22, 48, 133, 162, 334, 396, 408, 477, 524
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 3 cut(s) 76, 79, 221
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 3 cut(s) 76, 79, 221
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 433
GluI GCNGC 3 cut(s) 76, 79, 221
GsaI CCCAGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 2 cut(s) 81, 520
HapII CCGG 2 cut(s) 95, 521
HhaI GCGC 1 cut(s) 434
Hin1II CATG 9 cut(s) 26, 52, 137, 166, 338, 400, 412, 481, 528
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HinfI GANTC 1 cut(s) 98
HpaII CCGG 2 cut(s) 95, 521
Hpy166II GTNNAC 3 cut(s) 54, 418, 649
Hpy188I TCNGA 2 cut(s) 72, 394
Hpy188III TCNNGA 3 cut(s) 185, 471, 637
Hpy8I GTNNAC 3 cut(s) 54, 418, 649
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 412, 534, 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 359, 526, 540
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 9 cut(s) 26, 52, 137, 166, 338, 400, 412, 481, 528
HspAI GCGC 1 cut(s) 432
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 87, 232
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 4 cut(s) 83, 109, 206, 562
MboII GAAGA 4 cut(s) 46, 226, 282, 362
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 3 cut(s) 154, 256, 346
MroNI GCCGGC 1 cut(s) 520
MseI TTAA 2 cut(s) 89, 491
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 2 cut(s) 95, 521
MspR9I CCNGG 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 612
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 18, 359, 526, 540
NaeI GCCGGC 1 cut(s) 522
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 9 cut(s) 26, 52, 137, 166, 338, 400, 412, 481, 528
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 3 cut(s) 83, 206, 562
NspI RCATGY 2 cut(s) 137, 400
PctI GAATGC 1 cut(s) 612
PdiI GCCGGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 77, 80, 222
Ppu21I YACGTR 1 cut(s) 57
PsiI TTATAA 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 518
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 59, 198, 515
RsaNI GTAC 3 cut(s) 58, 197, 514
SaqAI TTAA 2 cut(s) 89, 491
SatI GCNGC 3 cut(s) 76, 79, 221
Sau96I GGNCC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 545
SetI ASST 7 cut(s) 59, 181, 298, 384, 455, 470, 580
SfaNI GCATC 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 3 cut(s) 154, 256, 346
SsiI CCGC 4 cut(s) 78, 122, 228, 288
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 609
TaiI ACGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 504
TasI AATT 3 cut(s) 154, 256, 346
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 89, 491
Tru9I TTAA 2 cut(s) 89, 491
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 3 cut(s) 83, 206, 562
TseI GCWGC 2 cut(s) 75, 220
Tsp45I GTSAC 3 cut(s) 83, 206, 562
TspDTI ATGAA 3 cut(s) 249, 354, 397
TspRI CASTG 1 cut(s) 363
XceI RCATGY 2 cut(s) 137, 400
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.