Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013407

Physical Location & Seq

Genomic Coordinates Reverse (-)

89302795 .. 89303235

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAACACCCCTTTTCATGACCATGAGAAGAAGCAGAAGAAGAGTTTCATGTCCTCGTACAAACCCAGCCCCGGACATCACCTAAAGCCGGACTCTAAGCCTGACATGGTGGTTAAATACCCGGTTTTACGTAGCTGGTTCAGTTTATCCAGGAAGTCGAAAACACGTCAAGAAGTTCTAGATCAATTCGAACATGCTCGGAGTCAAAGAGAAGAACCAGATAAGCAAGTTGTAGTGGTGGTGGAGTCAGCAAGAAAGTCGGTGTCTCATGTCGAAAGCAACTTGGTATCAGTGGCTTCGTTTCTTCAAGTGAAGGTCTTGGTTTCAGACATGCCTGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCTAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCAAAACACATGGCTTACAACCTCAAAAAGGTACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

146

Amino Acids

17.0

Weight (kDa)

10.03

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20110 AT5G20110
fragaria_vesca	FvH4_1g03560
malus_domestica	MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica	Prupe.7G240100_v2.0.a1
pyrus_communis	pycom02g02850 pycom15g15730
rosa_chinensis	RchiOBHm_Chr2g0089081
rosa_laevigata	RLG00000015989
rosa_multiflora	Rmu_sc0005510.1_g000005
rosa_roxburghii	Rroxscaffold_2G00152280
rosa_rugosa	Rorug01G0487300
rosa_samantha	Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana	Rw2G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	361
AfaI	GTAC	2 cut(s)	59, 435
AfeI	AGCGCT	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	71, 88, 430
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	308
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	149, 334
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	72, 122
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	151, 336
BcnI	CCSGG	2 cut(s)	72, 122
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	179, 369
BfoI	RGCGCY	1 cut(s)	369
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	4 cut(s)	72, 122, 151, 336
BmgBI	CACGTC	1 cut(s)	167
BmrFI	CCNGG	4 cut(s)	72, 122, 151, 336
Bpu14I	TTCGAA	1 cut(s)	189
BpuMI	CCSGG	2 cut(s)	72, 122
BsaAI	YACGTR	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 88, 430
BseBI	CCWGG	2 cut(s)	151, 336
BseDI	CCNNGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	71, 88, 430
BseXI	GCAGC	1 cut(s)	375
BseYI	CCCAGC	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	72, 89, 122
BslI	CCNNNNNNNGG	3 cut(s)	71, 88, 430
BsmAI	GTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	151, 336
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	96
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	181
BstNI	CCWGG	2 cut(s)	151, 336
BstNSI	RCATGY	2 cut(s)	197, 334
BstSCI	CCNGG	4 cut(s)	70, 120, 149, 334
BstSNI	TACGTA	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	297
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	58, 434
CviJI	RGCY	8 cut(s)	69, 88, 100, 135, 296, 339, 402, 416
CviKI_1	RGCY	8 cut(s)	69, 88, 100, 135, 296, 339, 402, 416
CviQI	GTAC	2 cut(s)	58, 434
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	149, 334
Fnu4HI	GCNGC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	2 cut(s)	179, 369
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	369
HapII	CCGG	3 cut(s)	72, 89, 122
HhaI	GCGC	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	92, 202, 245
HpaII	CCGG	3 cut(s)	72, 89, 122
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	201, 328
Hpy188III	TCNNGA	3 cut(s)	17, 170, 179
HpyAV	CCTTC	2 cut(s)	307, 367
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	130, 166
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	130, 166
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	375
MaeI	CTAG	2 cut(s)	179, 369
MaeII	ACGT	2 cut(s)	130, 166
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	6 cut(s)	40, 49, 52, 224, 296, 384
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	3 cut(s)	86, 211, 254
MnlI	CCTC	2 cut(s)	64, 434
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	3 cut(s)	72, 89, 122
MspR9I	CCNGG	4 cut(s)	72, 122, 151, 336
MvaI	CCWGG	2 cut(s)	151, 336
NciI	CCSGG	2 cut(s)	72, 122
NdeII	GATC	1 cut(s)	181
NspI	RCATGY	2 cut(s)	197, 334
NspV	TTCGAA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	3 cut(s)	86, 210, 253
PpsI	GAGTC	3 cut(s)	86, 210, 253
Ppu21I	YACGTR	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	149, 334
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	149, 334
RsaI	GTAC	2 cut(s)	59, 435
RsaNI	GTAC	2 cut(s)	58, 434
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	3 cut(s)	86, 211, 254
ScrFI	CCNGG	4 cut(s)	72, 122, 151, 336
SetI	ASST	8 cut(s)	84, 133, 137, 169, 318, 380, 426, 435
SfuI	TTCGAA	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	21
SnaBI	TACGTA	1 cut(s)	131
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	179, 369
StyD4I	CCNGG	4 cut(s)	70, 120, 149, 334
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	133, 169
TaqI	TCGA	3 cut(s)	158, 189, 273
TasI	AATT	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	1 cut(s)	363
TspDTI	ATGAA	4 cut(s)	5, 17, 37, 331
TspRI	CASTG	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	2 cut(s)	197, 334
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	179, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.