Prupe.7G240100_v2.0.a1

Dynein light chain type 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013407
Physical Location & Seq
Reverse (-)
20693154 .. 20694717
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G240100.1

Sequence Viewer

Length: 591 bp
ATGGAGAAGCAGAAGAAGAAAGCAGGTATGTCCAGTACATACAGCGGACGTCACTTAAAGCCTGAATCAAAGCCTCCTCCCAGTGCTGCCATGGCGGTGGATAAAAGTAAAACACCAGTTTTACGTAACTGGTTTAATTTATCCATCAGAAAACCAAAACCACGTCCAGAGTTTGATGTTCAAGATGAGCAGAGGCAGCAGCAAGGAAGAAGAGGGAGAGAAGGAGGAGAAGTGGTGGTGGTGGAGGCAGCAGCAAGGAAGTCAGTGTCTCATGTGGAAACAAATTTGGTATCAGTGGCTGAGTTTCTTCAGGTCAAAGTCTTGGTCTCTGACATGCCTGGCTTCATGCAAGTCCATGCCTTTCGCAGTGCAAGGCGAACTTATGACAGCTTGGAGAAGTTTAGCTCCAAACACATGGCTTATAACTTAAAAAAGGAGTTTGATAAAACGTATGGGCCGGCATGGCATTGCATCGTGGGCTCGGGTTTTGGGTCGTTCGTTACCCATTCAACAGGTTGTTTCCTCTATTTTTCAATGGAGAAACTCTGCATTTTGTTGTTTAGAACTAAAATCCAGAAAGCCCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

197

Amino Acids

22.25

Weight (kDa)

9.84

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20110 AT5G20110
fragaria_vesca FvH4_1g03560
malus_domestica MD00G1106900.v1.1 MD02G1034900.v1.1
prunus_persica Prupe.7G240100_v2.0.a1
pyrus_communis pycom02g02850 pycom15g15730
rosa_chinensis RchiOBHm_Chr2g0089081
rosa_laevigata RLG00000015989
rosa_multiflora Rmu_sc0005510.1_g000005
rosa_roxburghii Rroxscaffold_2G00152280
rosa_rugosa Rorug01G0487300
rosa_samantha Rh2AG042700 Rh2BG041200 Rh2CG042800 Rh2DG041800
rosa_wichuraiana Rw2G003490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AatII GACGTC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 14
AciI CCGC 2 cut(s) 45, 95
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 3 cut(s) 182, 510, 534
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 2 cut(s) 337, 582
AluBI AGCT 2 cut(s) 390, 405
AluI AGCT 2 cut(s) 390, 405
Alw26I GTCTC 2 cut(s) 273, 331
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 5 cut(s) 86, 196, 199, 248, 251
ApoI RAATTY 1 cut(s) 283
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AspS9I GGNCC 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 481
BanII GRGCYC 1 cut(s) 482
BbvI GCAGC 5 cut(s) 73, 208, 211, 260, 263
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 339, 584
BcoDI GTCTC 2 cut(s) 273, 331
BfuAI ACCTGC 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 463
BisI GCNGC 5 cut(s) 87, 197, 200, 249, 252
BlsI GCNGC 5 cut(s) 88, 198, 201, 250, 253
Bme1390I CCNGG 2 cut(s) 339, 584
BmeT110I CYCGRG 1 cut(s) 481
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 455
BmrFI CCNGG 2 cut(s) 339, 584
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 90, 582
BsaXI ACNNNNNCTCC 4 cut(s) 216, 219, 246, 249
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 4 cut(s) 33, 81, 116, 134
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 339, 584
BseDI CCNNGG 2 cut(s) 90, 582
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 4 cut(s) 33, 81, 116, 134
BseRI GAGGAG 2 cut(s) 66, 240
BseXI GCAGC 5 cut(s) 73, 208, 211, 260, 263
BshFI GGCC 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 1 cut(s) 458
BsmAI GTCTC 2 cut(s) 273, 331
BsnI GGCC 1 cut(s) 457
Bso31I GGTCTC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 482
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 2 cut(s) 45, 95
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 4 cut(s) 33, 81, 116, 134
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 90, 582
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 339, 584
Bst6I CTCTTC 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 273, 331
BstMWI GCNNNNNNNGC 4 cut(s) 92, 196, 463, 477
BstNI CCWGG 2 cut(s) 339, 584
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 337, 582
BstSNI TACGTA 1 cut(s) 125
BstV1I GCAGC 5 cut(s) 73, 208, 211, 260, 263
BstXI CCANNNNNNTGG 2 cut(s) 97, 415
BsuRI GGCC 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 4 cut(s) 88, 270, 300, 373
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 459
CaiI CAGNNNCTG 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 36
CviAII CATG 7 cut(s) 91, 272, 334, 346, 356, 415, 462
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco105I TACGTA 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 337, 582
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 7 cut(s) 94, 275, 337, 349, 359, 418, 465
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FatI CATG 7 cut(s) 90, 271, 333, 345, 355, 414, 461
Fnu4HI GCNGC 5 cut(s) 87, 197, 200, 249, 252
FriOI GRGCYC 1 cut(s) 482
Fsp4HI GCNGC 5 cut(s) 87, 197, 200, 249, 252
GluI GCNGC 5 cut(s) 87, 197, 200, 249, 252
HaeIII GGCC 1 cut(s) 457
HapII CCGG 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 7 cut(s) 94, 275, 337, 349, 359, 418, 465
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 458
Hpy188I TCNGA 2 cut(s) 149, 331
Hpy188III TCNNGA 3 cut(s) 167, 182, 574
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 4 cut(s) 49, 124, 163, 449
HpyCH4V TGCA 4 cut(s) 349, 371, 471, 549
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 196, 463, 477
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 4 cut(s) 49, 124, 163, 449
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 7 cut(s) 94, 275, 337, 349, 359, 418, 465
KroI GCCGGC 1 cut(s) 457
KroNI GCCGGC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 5 cut(s) 73, 208, 211, 260, 263
LweI GCATC 1 cut(s) 480
MaeII ACGT 4 cut(s) 49, 124, 163, 449
MaeIII GTNAC 3 cut(s) 50, 125, 499
MboII GAAGA 5 cut(s) 25, 28, 219, 222, 299
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 2 cut(s) 136, 283
MnlI CCTC 7 cut(s) 84, 87, 186, 206, 218, 238, 533
MroNI GCCGGC 1 cut(s) 457
MseI TTAA 3 cut(s) 56, 135, 428
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 2 cut(s) 339, 584
MvaI CCWGG 2 cut(s) 339, 584
MwoI GCNNNNNNNGC 4 cut(s) 92, 196, 463, 477
NaeI GCCGGC 1 cut(s) 459
NcoI CCATGG 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 457
NlaIII CATG 7 cut(s) 94, 275, 337, 349, 359, 418, 465
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 5 cut(s) 88, 198, 201, 250, 253
Ppu21I YACGTR 1 cut(s) 125
PsiI TTATAA 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 337, 582
PspGI CCWGG 2 cut(s) 337, 582
PspPI GGNCC 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 3 cut(s) 56, 135, 428
SatI GCNGC 5 cut(s) 87, 197, 200, 249, 252
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 339, 584
SduI GDGCHC 1 cut(s) 482
SetI ASST 9 cut(s) 28, 52, 127, 166, 315, 392, 407, 452, 517
SfaNI GCATC 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 95
SnaBI TACGTA 1 cut(s) 125
Sse9I AATT 2 cut(s) 136, 283
SsiI CCGC 2 cut(s) 45, 95
StyD4I CCNGG 2 cut(s) 337, 582
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 4 cut(s) 52, 127, 166, 452
TasI AATT 2 cut(s) 136, 283
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 56, 135, 428
Tru9I TTAA 3 cut(s) 56, 135, 428
TscAI CASTG 4 cut(s) 88, 270, 300, 373
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 5 cut(s) 86, 196, 199, 248, 251
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 334
TspRI CASTG 4 cut(s) 88, 270, 300, 373
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
ZraI GACGTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.