AT5G20190
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010827
Physical Location & Seq
Forward (+)
6813762 .. 6815873
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20190.1

Sequence Viewer

Length: 873 bp
ATGCTTCTACGAAGCGCTTCAACGCCACTTCTAAACTCATTGGTTCATGTCTCGAGTCCAAGAGATTCTCCAATCGAAACCGTTGAATCTGTTCATCAGATTCAACGACACAGATCCATAACACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTACACTCTAGCGACGATTCTTCAAGGAGGATGAAAAGAACGGCGTCAGATAGCGATCTACGACATTTGACATCGACGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGATGGAGGATGTGGATGAAGGAATCGGATTCGGTCTTATACGCACTTCGTCTTATGATGGTATAAGTTGGGCTTTGGATGAAGATACTGAGGTTGCTGGCGGTGGTGGTGGTGGGATGTTTCACGGTGGAGGAAAAGGAAGGAGTGGTGGTAGATCTGATGGTGGTGATGGAGGTGACGATAACACTGATGTTCATTATCGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGTAATTATGCTAAATTCCTGAAGGAGGTTAGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGGAGAGCTATTCTGGTGAGTCCTAATGATGGGAATGTTCTGGCTATGTACGCTGAGTTGGTTTGGAAGATCCATAAGGATTCATCTCGTGCTGAGAATTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGACTGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTGAAGAGGAAGAAGAAGAGGAAAAGGAAGAGAGACATGAAGAAGAACTTGAGCATCAAACTTCTCGAATGAATTTCTTCACCGGACCTTCTCCAATCACGGCCATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

290

Amino Acids

31.82

Weight (kDa)

5.05

Isoelectric Point (pI)

70.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 3 cut(s) 248, 270, 381
AclWI GGATC 2 cut(s) 108, 649
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 2 cut(s) 536, 832
AcuI CTGAAG 2 cut(s) 563, 783
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 3 cut(s) 168, 635, 729
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 509, 547, 614
AgsI TTSAA 7 cut(s) 21, 86, 104, 189, 494, 568, 691
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 5 cut(s) 497, 593, 698, 707, 734
AluI AGCT 5 cut(s) 497, 593, 698, 707, 734
Alw26I GTCTC 2 cut(s) 55, 787
AlwI GGATC 2 cut(s) 108, 649
Ama87I CYCGRG 1 cut(s) 52
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 861
ApeKI GCWGC 2 cut(s) 704, 707
ApoI RAATTY 2 cut(s) 536, 832
Asp700I GAANNNNTTC 4 cut(s) 16, 90, 686, 836
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 845
AsuHPI GGTGA 5 cut(s) 265, 458, 467, 613, 832
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 845
AxyI CCTNAGG 1 cut(s) 714
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 694, 716
BccI CCATC 5 cut(s) 277, 332, 434, 443, 608
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 55, 787
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 18
BglII AGATCT 1 cut(s) 434
BisI GCNGC 2 cut(s) 705, 708
BlsI GCNGC 2 cut(s) 706, 709
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 845
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 845
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 748, 823
BpiI GAAGAC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 842
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 547, 614
Bse118I RCCGGY 1 cut(s) 250
Bse21I CCTNAGG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 504
BseGI GGATG 6 cut(s) 201, 295, 301, 364, 402, 763
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 3 cut(s) 509, 547, 614
BseMII CTCAG 5 cut(s) 360, 535, 630, 669, 705
BseXI GCAGC 2 cut(s) 694, 716
BshFI GGCC 1 cut(s) 863
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 251, 843
BslI CCNNNNNNNGG 3 cut(s) 509, 547, 614
BsmAI GTCTC 2 cut(s) 55, 787
BsnI GGCC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 52
Bsp1407I TGTACA 2 cut(s) 166, 727
Bsp143I GATC 4 cut(s) 113, 220, 434, 654
BspACI CCGC 3 cut(s) 248, 270, 381
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 5 cut(s) 361, 534, 631, 670, 706
BspPI GGATC 2 cut(s) 108, 649
BsrBI CCGCTC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 250
BsrGI TGTACA 2 cut(s) 166, 727
BssAI RCCGGY 1 cut(s) 250
BssMI GATC 4 cut(s) 113, 220, 434, 654
BssNI GRCGYC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 4 cut(s) 82, 407, 722, 747
Bst6I CTCTTC 3 cut(s) 759, 771, 783
BstACI GRCGYC 1 cut(s) 209
BstAUI TGTACA 2 cut(s) 166, 727
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 5 cut(s) 369, 521, 639, 678, 714
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 6 cut(s) 201, 295, 301, 364, 402, 763
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 116, 223, 437, 657
BstMAI GTCTC 2 cut(s) 55, 787
BstMBI GATC 4 cut(s) 113, 220, 434, 654
BstMWI GCNNNNNNNGC 4 cut(s) 153, 635, 704, 740
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 502
BstV1I GCAGC 2 cut(s) 694, 716
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 3 cut(s) 113, 434, 654
BstYI RGATCY 3 cut(s) 113, 434, 654
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 1 cut(s) 863
BtsCI GGATG 6 cut(s) 201, 295, 301, 364, 402, 763
BtsIMutI CAGTG 1 cut(s) 465
Cac8I GCNNGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 845
CseI GACGC 2 cut(s) 120, 198
Csp6I GTAC 3 cut(s) 167, 634, 728
CviAII CATG 3 cut(s) 47, 797, 865
CviJI RGCY 9 cut(s) 156, 353, 497, 593, 629, 698, 707, 734, 863
CviKI_1 RGCY 9 cut(s) 156, 353, 497, 593, 629, 698, 707, 734, 863
CviQI GTAC 3 cut(s) 167, 634, 728
DdeI CTNAG 5 cut(s) 369, 521, 639, 678, 714
DpnI GATC 4 cut(s) 115, 222, 436, 656
DpnII GATC 4 cut(s) 113, 220, 434, 654
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 3 cut(s) 759, 771, 783
EarI CTCTTC 3 cut(s) 759, 771, 783
Eco47I GGWCC 1 cut(s) 845
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 563, 783
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 502
FaeI CATG 3 cut(s) 50, 800, 868
FalI AAGNNNNNCTT 4 cut(s) 337, 369, 792, 824
FatI CATG 3 cut(s) 46, 796, 864
Fnu4HI GCNGC 2 cut(s) 705, 708
FokI GGATG 6 cut(s) 208, 302, 308, 371, 409, 770
Fsp4HI GCNGC 2 cut(s) 705, 708
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 705, 708
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 863
HapII CCGG 2 cut(s) 251, 843
HgaI GACGC 2 cut(s) 120, 198
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 3 cut(s) 50, 800, 868
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 9 cut(s) 55, 65, 86, 100, 182, 303, 309, 604, 665
HpaII CCGG 2 cut(s) 251, 843
HphI GGTGA 5 cut(s) 265, 458, 467, 613, 832
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 4 cut(s) 99, 214, 308, 439
Hpy188III TCNNGA 4 cut(s) 52, 541, 713, 825
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 2 cut(s) 182, 244
HpyAV CCTTC 4 cut(s) 293, 414, 538, 858
HpyCH4III ACNGT 4 cut(s) 82, 407, 722, 747
HpyCH4V TGCA 2 cut(s) 704, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 635, 704, 740
HpyF3I CTNAG 5 cut(s) 369, 521, 639, 678, 714
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 3 cut(s) 50, 800, 868
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 4 cut(s) 113, 220, 434, 654
LmnI GCTCC 1 cut(s) 715
LpnPI CCDG 9 cut(s) 264, 363, 489, 516, 554, 584, 611, 726, 856
Lsp1109I GCAGC 2 cut(s) 694, 716
LweI GCATC 2 cut(s) 748, 823
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 455
MalI GATC 4 cut(s) 115, 222, 436, 656
MbiI CCGCTC 1 cut(s) 270
MboI GATC 4 cut(s) 113, 220, 434, 654
MflI RGATCY 3 cut(s) 113, 434, 654
MluCI AATT 4 cut(s) 526, 536, 682, 832
MlyI GAGTC 2 cut(s) 64, 613
MroXI GAANNNNTTC 4 cut(s) 16, 90, 686, 836
MseI TTAA 1 cut(s) 871
MslI CAYNNNNRTG 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 2 cut(s) 251, 843
MspR9I CCNGG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 4 cut(s) 153, 635, 704, 740
NdeII GATC 4 cut(s) 113, 220, 434, 654
NlaIII CATG 3 cut(s) 50, 800, 868
NmuCI GTSAC 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 52
PdmI GAANNNNTTC 4 cut(s) 16, 90, 686, 836
PfeI GAWTC 7 cut(s) 65, 86, 100, 182, 303, 309, 665
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 2 cut(s) 706, 709
PleI GAGTC 2 cut(s) 63, 612
PpsI GAGTC 2 cut(s) 63, 612
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspPI GGNCC 1 cut(s) 845
PsuI RGATCY 3 cut(s) 113, 434, 654
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 168, 635, 729
RsaNI GTAC 3 cut(s) 167, 634, 728
RseI CAYNNNNRTG 1 cut(s) 863
SaqAI TTAA 1 cut(s) 871
SatI GCNGC 2 cut(s) 705, 708
Sau3AI GATC 4 cut(s) 113, 220, 434, 654
Sau96I GGNCC 1 cut(s) 845
SchI GAGTC 2 cut(s) 64, 613
ScrFI CCNGG 1 cut(s) 504
SetI ASST 9 cut(s) 375, 457, 499, 552, 595, 700, 709, 736, 850
SfaNI GCATC 2 cut(s) 748, 823
Sfr274I CTCGAG 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 250
SinI GGWCC 1 cut(s) 845
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 2 cut(s) 52, 809
SmoI CTYRAG 2 cut(s) 52, 809
Sse9I AATT 4 cut(s) 526, 536, 682, 832
SsiI CCGC 3 cut(s) 248, 270, 381
SspI AATATT 1 cut(s) 581
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 502
TaaI ACNGT 4 cut(s) 82, 407, 722, 747
TaqI TCGA 4 cut(s) 53, 75, 239, 826
TaqII GACCGA 1 cut(s) 302
TasI AATT 4 cut(s) 526, 536, 682, 832
TatI WGTACW 2 cut(s) 166, 727
TfiI GAWTC 7 cut(s) 65, 86, 100, 182, 303, 309, 665
Tru1I TTAA 1 cut(s) 871
Tru9I TTAA 1 cut(s) 871
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 2 cut(s) 704, 707
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 9 cut(s) 35, 83, 212, 312, 375, 464, 657, 813, 845
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 845
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 2 cut(s) 536, 832
XhoI CTCGAG 1 cut(s) 52
XmnI GAANNNNTTC 4 cut(s) 16, 90, 686, 836
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.