RLG00000015932
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010827
Physical Location & Seq
Reverse (-)
2549979 .. 2551424
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015932

Sequence Viewer

Length: 918 bp
ATGCTTCTACGAAGCTCATCGTCGCCGATACTAAGCTCATGGCTCCCCCATTCCAAAGACTCGGGTCTCGGGTCGTCCTCCTCGCCCGAACCCGAAATGGTGCCCCAAATCCCCCGAACCTGCGCCATTTCCCTCAGGTCTCCTCTTTCCGTATCTCGTAAAACAAACCAACACCCGATCACTCTCACGCGCGCCGGCTCCGACGCCGATCTCGGCGGCAGCCACCAGCGGAGGCCGCCGTTCGCGAACACGTTGAACGGGTTCGAGGAGAGAGGAGAGGAGGCTGGTTACGGCGGAGGAGGAGGAGGAGTGAGGAGGACGATGTCGTTGGGATTGGCGGAGGTGGAGGGGTGTGGGATGGGGACGAGAGAGAATATCGGGTTGTTGAGCGGTTTGGTTGGGGGTGGGGACGGCGGAGGCAAGATCTGCGGCGGTAATGGCGGAGGAGGTGGCGGCGGATCGGACGATGGTGGAGAATCGGATCGGGGAAGCGCGACCGCCGAGACGCATTATCGCAATATGATCGAGGCTGATCCCGGAAATCCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAAAGAGGTTGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCAATCTTGGCTAACCCAAACGATGGAAATGTTTTATCCATGTATGCGGATTTGGTATGGCAAATTCACAAGGATGCTGCCAGAGCCGAGACTTATTTCGATCAAGCTGTTAAAGCTTCACCTGATGATTGTTATGTTCAAGCATCATATGCTCATTTCCTTTGGGATTCTGAGGAAGACGAAGATGAGGGGGAGGAGAAGGAGGTGAAAGAAGAAGGCAGCAACCCAGCACCAGCACACAAGTTGGTTCACGGAGTTACCCCTTCCCCGCCTCCGTTAGCTGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

306

Amino Acids

31.84

Weight (kDa)

4.86

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 165 - 209 4.2e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 390
AccII CGCG 4 cut(s) 190, 192, 245, 494
AclWI GGATC 3 cut(s) 466, 489, 527
AcsI RAATTY 2 cut(s) 592, 687
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 647
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 256, 764
AluBI AGCT 5 cut(s) 15, 36, 731, 740, 905
AluI AGCT 5 cut(s) 15, 36, 731, 740, 905
Alw26I GTCTC 4 cut(s) 71, 144, 497, 707
AlwI GGATC 3 cut(s) 466, 489, 527
Ama87I CYCGRG 2 cut(s) 61, 68
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 6 cut(s) 219, 701, 843, 905, 908, 911
ApoI RAATTY 2 cut(s) 592, 687
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 4 cut(s) 125, 192, 194, 494
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 2 cut(s) 735, 841
AvaI CYCGRG 2 cut(s) 61, 68
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 807
BbvI GCAGC 6 cut(s) 231, 688, 855, 892, 895, 898
BccI CCATC 3 cut(s) 352, 461, 641
BceAI ACGGC 3 cut(s) 223, 307, 427
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 4 cut(s) 71, 144, 497, 707
BfuAI ACCTGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 423
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 537
BmeT110I CYCGRG 2 cut(s) 61, 68
BmiI GGNNCC 3 cut(s) 44, 102, 199
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 688, 776
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 807
BpuMI CCSGG 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 71, 144
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 647
Bse118I RCCGGY 1 cut(s) 194
Bse21I CCTNAGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 363, 703
BseLI CCNNNNNNNGG 1 cut(s) 647
BseMII CTCAG 2 cut(s) 148, 786
BsePI GCGCGC 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 6 cut(s) 231, 688, 855, 892, 895, 898
BseYI CCCAGC 1 cut(s) 850
Bsh1236I CGCG 4 cut(s) 190, 192, 245, 494
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 498
BsiHKCI CYCGRG 2 cut(s) 61, 68
BsiSI CCGG 2 cut(s) 195, 537
BslFI GGGAC 2 cut(s) 376, 422
BslI CCNNNNNNNGG 1 cut(s) 647
BsmAI GTCTC 4 cut(s) 71, 144, 497, 707
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 376, 422
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 2 cut(s) 71, 144
BsoBI CYCGRG 2 cut(s) 61, 68
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
Bsp68I TCGCGA 1 cut(s) 245
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 147, 787
BspFNI CGCG 4 cut(s) 190, 192, 245, 494
BspLI GGNNCC 3 cut(s) 44, 102, 199
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 466, 489, 527
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 71, 144
BsrBI CCGCTC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 426, 773
BstC8I GCNNGC 2 cut(s) 192, 196
BstDEI CTNAG 6 cut(s) 32, 134, 554, 567, 795, 915
BstF5I GGATG 2 cut(s) 363, 703
BstFNI CGCG 4 cut(s) 190, 192, 245, 494
BstHHI GCGC 4 cut(s) 125, 192, 194, 494
BstKTI GATC 8 cut(s) 180, 211, 426, 461, 484, 525, 535, 727
BstMAI GTCTC 4 cut(s) 71, 144, 497, 707
BstMBI GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 8 cut(s) 235, 426, 438, 632, 707, 737, 773, 911
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 4 cut(s) 190, 192, 245, 494
BstV1I GCAGC 6 cut(s) 231, 688, 855, 892, 895, 898
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 363, 703
BtuMI TCGCGA 1 cut(s) 245
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 192, 196
CfoI GCGC 4 cut(s) 125, 192, 194, 494
Cfr10I RCCGGY 1 cut(s) 194
CseI GACGC 2 cut(s) 212, 514
Csp6I GTAC 1 cut(s) 613
CviAII CATG 2 cut(s) 39, 664
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 6 cut(s) 32, 134, 554, 567, 795, 915
DpnI GATC 8 cut(s) 179, 210, 425, 460, 483, 524, 534, 726
DpnII GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 5 cut(s) 309, 353, 429, 456, 471
Eco31I GGTCTC 2 cut(s) 71, 144
Eco81I CCTNAGG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 61, 68
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 2 cut(s) 42, 667
FaiI YATR 9 cut(s) 40, 521, 564, 665, 669, 682, 759, 772, 774
FaqI GGGAC 2 cut(s) 376, 422
FatI CATG 2 cut(s) 38, 663
FauI CCCGC 1 cut(s) 900
FauNDI CATATG 1 cut(s) 772
FokI GGATG 2 cut(s) 370, 710
GlaI GCGC 4 cut(s) 124, 191, 193, 493
GsaI CCCAGC 1 cut(s) 854
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 195, 537
HgaI GACGC 2 cut(s) 212, 514
HhaI GCGC 4 cut(s) 125, 192, 194, 494
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 42, 667
Hin6I GCGC 4 cut(s) 123, 190, 192, 492
HinP1I GCGC 4 cut(s) 123, 190, 192, 492
HindIII AAGCTT 1 cut(s) 738
HinfI GANTC 3 cut(s) 59, 476, 791
HpaII CCGG 2 cut(s) 195, 537
HphI GGTGA 2 cut(s) 735, 841
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 4 cut(s) 202, 463, 481, 796
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 874
Hpy99I CGWCG 2 cut(s) 25, 206
HpyAV CCTTC 3 cut(s) 817, 833, 897
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 8 cut(s) 235, 426, 438, 632, 707, 737, 773, 911
HpyF3I CTNAG 6 cut(s) 32, 134, 554, 567, 795, 915
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 42, 667
HspAI GCGC 4 cut(s) 123, 190, 192, 492
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Kzo9I GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
LmnI GCTCC 2 cut(s) 48, 203
Lsp1109I GCAGC 6 cut(s) 231, 688, 855, 892, 895, 898
LweI GCATC 2 cut(s) 688, 776
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 287, 880
MalI GATC 8 cut(s) 179, 210, 425, 460, 483, 524, 534, 726
MbiI CCGCTC 1 cut(s) 390
MboI GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
MboII GAAGA 4 cut(s) 620, 812, 818, 848
MflI RGATCY 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 592, 687
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 735
MslI CAYNNNNRTG 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 2 cut(s) 195, 537
MspR9I CCNGG 1 cut(s) 537
MvnI CGCG 4 cut(s) 190, 192, 245, 494
MwoI GCNNNNNNNGC 8 cut(s) 235, 426, 438, 632, 707, 737, 773, 911
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 772
NdeII GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 2 cut(s) 42, 667
NlaIV GGNNCC 3 cut(s) 44, 102, 199
NmeAIII GCCGAG 3 cut(s) 192, 526, 736
NruI TCGCGA 1 cut(s) 245
PauI GCGCGC 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 476, 791
PflFI GACNNNGTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 535
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PshAI GACNNNNGTC 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 850
PspN4I GGNNCC 3 cut(s) 44, 102, 199
PsuI RGATCY 1 cut(s) 423
PsyI GACNNNGTC 1 cut(s) 322
PteI GCGCGC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 1 cut(s) 735
Sau3AI GATC 8 cut(s) 177, 208, 423, 458, 481, 522, 532, 724
ScaI AGTACT 1 cut(s) 614
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 2 cut(s) 688, 776
SmiMI CAYNNNNRTG 1 cut(s) 696
Sse9I AATT 2 cut(s) 592, 687
StyD4I CCNGG 1 cut(s) 535
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 264, 525, 723
TasI AATT 2 cut(s) 592, 687
TatI WGTACW 1 cut(s) 612
TauI GCSGC 4 cut(s) 219, 238, 432, 456
TfiI GAWTC 2 cut(s) 476, 791
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TseI GCWGC 6 cut(s) 219, 701, 843, 905, 908, 911
TspGWI ACGGA 3 cut(s) 139, 888, 891
Tth111I GACNNNGTC 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 647
XapI RAATTY 2 cut(s) 592, 687
XmnI GAANNNNTTC 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.