MD15G1171400.v1.1
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010827
Physical Location & Seq
Reverse (-)
13308330 .. 13309891
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1171400.v1.1.491

Sequence Viewer

Length: 963 bp
ATGCTTCTACGGAGCTCATCGACGCCGGTGCCCAACTCATGGCTGCAGTATTCCAAAGATTCAACATTTTTCGATCAGCAACCGGAAATGGTGCAGCAAATCCAGAGAACTCGCTCCGTTACCCTCACGGCGTCGTCGCTGTCGCCCTTTTTGCTGTCGCCGATCAGCGACTCGGGGAGGAGGTTGACCCGGGCGGTCTCCGAGGACGATCTCAGAGATTTCATGGTGGCGCCGCTGAAAAGAAAGGCCTTCAGCATCCCGATGGATGGGTTTGTGGAGAGAGAGGAGGAAGACGAGATAAAAATGGAGATGGGTTTTGCTGCCTCTGGGTTGGGCAGAACGGCCTCCTTGGGATTGGTGGAGTTGGAGGGGTGTGAGGCCGGGTTGAGGGAGGACAGGAGGTTGCTGAGCGATTTGGAAGGGGGCGGCGTTGGTGGAGGAGGCGGCAAGATCTGCGGTGGTAATGGCGGAGGGAGTGGTGAATCGGACGACGGAGATGAGGGCAATGGATTTGGGGAATCGAATCAAGGCGGTGCGAGCACCGATTTGTACTACCAGAAAATGATCGACGCTAATCCTGGAAATCCCATGCTCCTTAGCAATTATGCTCGCTTTTTGAAAGAGGTTCAAGGGGATTTCGGAAAAGCCGAAGAGTACTGCGGGAGAGCAATTCTGGCGTGCGCGAATGACGGTACTGTTCTGTCAATGTTTGCGGATTTGGTATGGCAGATTCACAAGGATGCTCCAAGAGCTCAGTCTTACTTTGATCAAGCTGTTCAAGCTGCCCCTGATGATAGTTATGTTCTAGCATCATATGCCAAATTTCTCTGGGATTCCGAGGAGGAAGACGAAGAGGAGGACGAGGAGGTGAATCTCAAAGAAGGGGGGAATAACAGAGCGTCGCCAACCAATTTGTTTACTGGAATTCCTCCTTCACCACCTCCGTTAGCTGCTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

321

Amino Acids

34.49

Weight (kDa)

4.35

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 229
AccB7I CCANNNNNTGG 1 cut(s) 39
AccII CGCG 1 cut(s) 683
AciI CCGC 9 cut(s) 194, 233, 426, 444, 456, 468, 531, 660, 713
AcsI RAATTY 2 cut(s) 821, 924
AcuI CTGAAG 1 cut(s) 235
AcyI GRCGYC 3 cut(s) 23, 131, 230
AfaI GTAC 3 cut(s) 551, 656, 694
AfiI CCNNNNNNNGG 3 cut(s) 39, 266, 387
AgsI TTSAA 4 cut(s) 63, 619, 629, 779
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 5 cut(s) 15, 752, 773, 782, 950
AluI AGCT 5 cut(s) 15, 752, 773, 782, 950
Alw21I GWGCWC 3 cut(s) 17, 542, 754
Alw26I GTCTC 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 172, 189
AoxI GGCC 3 cut(s) 246, 342, 378
ApeKI GCWGC 7 cut(s) 43, 94, 320, 782, 950, 953, 956
ApoI RAATTY 2 cut(s) 821, 924
AspLEI GCGC 2 cut(s) 232, 683
AsuC2I CCSGG 3 cut(s) 190, 191, 382
AsuHPI GGTGA 3 cut(s) 491, 880, 927
AvaI CYCGRG 2 cut(s) 172, 189
BaeGI GKGCMC 1 cut(s) 33
BanI GGYRCC 2 cut(s) 28, 229
BanII GRGCYC 2 cut(s) 17, 754
BbsI GAAGAC 2 cut(s) 297, 852
Bbv12I GWGCWC 3 cut(s) 17, 542, 754
BbvI GCAGC 7 cut(s) 30, 106, 307, 769, 937, 940, 943
BccI CCATC 3 cut(s) 256, 260, 304
BceAI ACGGC 2 cut(s) 144, 357
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 579
BclI TGATCA 1 cut(s) 766
BcnI CCSGG 3 cut(s) 190, 191, 382
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 233
BglII AGATCT 1 cut(s) 450
BlpI GCTNAGC 1 cut(s) 407
BmcAI AGTACT 1 cut(s) 656
Bme1390I CCNGG 4 cut(s) 190, 191, 382, 579
BmeT110I CYCGRG 2 cut(s) 172, 189
BmiI GGNNCC 2 cut(s) 30, 231
BmrFI CCNGG 4 cut(s) 190, 191, 382, 579
BmsI GCATC 3 cut(s) 264, 730, 818
BpiI GAAGAC 2 cut(s) 297, 852
Bpu10I CCTNAGC 1 cut(s) 596
Bpu1102I GCTNAGC 1 cut(s) 407
BpuMI CCSGG 3 cut(s) 190, 191, 382
BsaHI GRCGYC 3 cut(s) 23, 131, 230
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 4 cut(s) 189, 201, 348, 837
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 266, 387
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 925
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 4 cut(s) 189, 201, 348, 837
BseGI GGATG 3 cut(s) 255, 271, 745
BseLI CCNNNNNNNGG 3 cut(s) 39, 266, 387
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 3 cut(s) 226, 398, 767
BseNI ACTGG 1 cut(s) 925
BseRI GAGGAG 6 cut(s) 193, 299, 453, 854, 869, 878
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 7 cut(s) 30, 106, 307, 769, 937, 940, 943
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 683
BshFI GGCC 3 cut(s) 248, 344, 380
BshNI GGYRCC 2 cut(s) 28, 229
BsiHKAI GWGCWC 3 cut(s) 17, 542, 754
BsiHKCI CYCGRG 2 cut(s) 172, 189
BsiSI CCGG 4 cut(s) 26, 83, 190, 381
BslI CCNNNNNNNGG 3 cut(s) 39, 266, 387
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 3 cut(s) 248, 344, 380
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 2 cut(s) 172, 189
Bsp1286I GDGCHC 4 cut(s) 17, 33, 542, 754
Bsp143I GATC 6 cut(s) 73, 162, 208, 450, 564, 766
Bsp1720I GCTNAGC 1 cut(s) 407
BspACI CCGC 9 cut(s) 194, 233, 426, 444, 456, 468, 531, 660, 713
BspANI GGCC 3 cut(s) 248, 344, 380
BspCNI CTCAG 3 cut(s) 225, 399, 766
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 2 cut(s) 30, 231
BspMAI CTGCAG 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 28, 229
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 925
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 189, 201, 348, 837
BssMI GATC 6 cut(s) 73, 162, 208, 450, 564, 766
BssNI GRCGYC 3 cut(s) 23, 131, 230
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 692, 697
Bst6I CTCTTC 2 cut(s) 645, 846
BstACI GRCGYC 3 cut(s) 23, 131, 230
BstAPI GCANNNNNTGC 2 cut(s) 453, 815
BstC8I GCNNGC 3 cut(s) 538, 610, 679
BstDEI CTNAG 4 cut(s) 212, 407, 596, 753
BstF5I GGATG 3 cut(s) 255, 271, 745
BstFNI CGCG 1 cut(s) 683
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 683
BstKTI GATC 6 cut(s) 76, 165, 211, 453, 567, 769
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 6 cut(s) 73, 162, 208, 450, 564, 766
BstMWI GCNNNNNNNGC 8 cut(s) 151, 453, 537, 674, 749, 779, 815, 956
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 4 cut(s) 188, 189, 380, 577
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 7 cut(s) 30, 106, 307, 769, 937, 940, 943
BstV2I GAAGAC 2 cut(s) 297, 852
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 3 cut(s) 248, 344, 380
BtsCI GGATG 3 cut(s) 255, 271, 745
Cac8I GCNNGC 3 cut(s) 538, 610, 679
CfoI GCGC 2 cut(s) 232, 683
Cfr10I RCCGGY 1 cut(s) 25
Cfr9I CCCGGG 1 cut(s) 189
CseI GACGC 4 cut(s) 31, 120, 578, 888
Csp6I GTAC 3 cut(s) 550, 655, 693
CviAII CATG 3 cut(s) 39, 223, 589
CviQI GTAC 3 cut(s) 550, 655, 693
DdeI CTNAG 4 cut(s) 212, 407, 596, 753
DinI GGCGCC 1 cut(s) 231
DpnI GATC 6 cut(s) 75, 164, 210, 452, 566, 768
DpnII GATC 6 cut(s) 73, 162, 208, 450, 564, 766
Eam1104I CTCTTC 2 cut(s) 645, 846
EarI CTCTTC 2 cut(s) 645, 846
EciI GGCGGA 1 cut(s) 483
Ecl136II GAGCTC 2 cut(s) 15, 752
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 2 cut(s) 17, 754
Eco31I GGTCTC 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 15, 752
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 172, 189
EcoICRI GAGCTC 2 cut(s) 15, 752
EcoRI GAATTC 1 cut(s) 924
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 2 cut(s) 17, 754
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 3 cut(s) 42, 226, 592
FaiI YATR 9 cut(s) 40, 224, 590, 606, 724, 801, 814, 816, 961
FatI CATG 3 cut(s) 38, 222, 588
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 1 cut(s) 766
FokI GGATG 3 cut(s) 242, 278, 752
FriOI GRGCYC 2 cut(s) 17, 754
FspBI CTAG 1 cut(s) 806
GlaI GCGC 2 cut(s) 231, 682
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 3 cut(s) 248, 344, 380
HapII CCGG 4 cut(s) 26, 83, 190, 381
HgaI GACGC 4 cut(s) 31, 120, 578, 888
HhaI GCGC 2 cut(s) 232, 683
Hin1I GRCGYC 3 cut(s) 23, 131, 230
Hin1II CATG 3 cut(s) 42, 226, 592
Hin6I GCGC 2 cut(s) 230, 681
HinP1I GCGC 2 cut(s) 230, 681
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 8 cut(s) 59, 170, 482, 518, 523, 730, 833, 871
HpaII CCGG 4 cut(s) 26, 83, 190, 381
HphI GGTGA 3 cut(s) 491, 880, 927
Hpy166II GTNNAC 2 cut(s) 186, 918
Hpy188I TCNGA 5 cut(s) 202, 215, 487, 641, 838
Hpy188III TCNNGA 2 cut(s) 103, 259
Hpy8I GTNNAC 2 cut(s) 186, 918
Hpy99I CGWCG 6 cut(s) 25, 136, 139, 494, 572, 904
HpyAV CCTTC 4 cut(s) 259, 413, 875, 942
HpyCH4III ACNGT 2 cut(s) 692, 697
HpyCH4V TGCA 3 cut(s) 46, 94, 959
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 453, 537, 674, 749, 779, 815, 956
HpyF3I CTNAG 4 cut(s) 212, 407, 596, 753
Hsp92I GRCGYC 3 cut(s) 23, 131, 230
Hsp92II CATG 3 cut(s) 42, 226, 592
HspAI GCGC 2 cut(s) 230, 681
KasI GGCGCC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 6 cut(s) 73, 162, 208, 450, 564, 766
LmnI GCTCC 4 cut(s) 12, 119, 597, 748
Lsp1109I GCAGC 7 cut(s) 30, 106, 307, 769, 937, 940, 943
LweI GCATC 3 cut(s) 264, 730, 818
MaeI CTAG 1 cut(s) 806
MaeIII GTNAC 1 cut(s) 118
MalI GATC 6 cut(s) 75, 164, 210, 452, 566, 768
MboI GATC 6 cut(s) 73, 162, 208, 450, 564, 766
MboII GAAGA 4 cut(s) 302, 662, 857, 863
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 4 cut(s) 17, 33, 542, 754
MluCI AATT 5 cut(s) 601, 669, 821, 910, 924
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 345
MslI CAYNNNNRTG 2 cut(s) 260, 738
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 4 cut(s) 26, 83, 190, 381
MspR9I CCNGG 4 cut(s) 190, 191, 382, 579
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 8 cut(s) 151, 453, 537, 674, 749, 779, 815, 956
NarI GGCGCC 1 cut(s) 230
NciI CCSGG 3 cut(s) 190, 191, 382
NdeI CATATG 1 cut(s) 814
NdeII GATC 6 cut(s) 73, 162, 208, 450, 564, 766
NlaIII CATG 3 cut(s) 42, 226, 592
NlaIV GGNNCC 2 cut(s) 30, 231
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PfeI GAWTC 7 cut(s) 59, 482, 518, 523, 730, 833, 871
PflMI CCANNNNNTGG 1 cut(s) 39
PfoI TCCNGGA 1 cut(s) 577
PleI GAGTC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 17, 754
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 30, 231
PstI CTGCAG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 3 cut(s) 551, 656, 694
RsaNI GTAC 3 cut(s) 550, 655, 693
RseI CAYNNNNRTG 2 cut(s) 260, 738
SacI GAGCTC 2 cut(s) 17, 754
Sau3AI GATC 6 cut(s) 73, 162, 208, 450, 564, 766
ScaI AGTACT 1 cut(s) 656
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 4 cut(s) 190, 191, 382, 579
SduI GDGCHC 4 cut(s) 17, 33, 542, 754
SfaNI GCATC 3 cut(s) 264, 730, 818
SfcI CTRYAG 1 cut(s) 44
SfoI GGCGCC 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 260, 738
Sse9I AATT 5 cut(s) 601, 669, 821, 910, 924
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 9 cut(s) 194, 233, 426, 444, 456, 468, 531, 660, 713
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 2 cut(s) 17, 754
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 188, 189, 380, 577
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 692, 697
TaqI TCGA 4 cut(s) 20, 72, 521, 567
TasI AATT 5 cut(s) 601, 669, 821, 910, 924
TatI WGTACW 2 cut(s) 549, 654
TauI GCSGC 3 cut(s) 235, 429, 447
TfiI GAWTC 7 cut(s) 59, 482, 518, 523, 730, 833, 871
TseI GCWGC 7 cut(s) 43, 94, 320, 782, 950, 953, 956
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 4 cut(s) 25, 106, 507, 933
TspMI CCCGGG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 39
XapI RAATTY 2 cut(s) 821, 924
XmaI CCCGGG 1 cut(s) 189
XspI CTAG 1 cut(s) 806
ZrmI AGTACT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.