pycom02g02500
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010827
Physical Location & Seq
Reverse (-)
1546872 .. 1548054
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02500.3

Sequence Viewer

Length: 978 bp
ATGCTTCTACGGAGCTCATCGACGCCGGTGCTCAATTCATTGCTGCCGCATTCCAAAGACTCCACATTTTCCGATCAGCAACCGGAAATAGTCCCGCAAATTTCGAGAACTCGCTCCGTTACCCTCTCGGCGTCGTCGTGGTCGCCCTTTTTGCTGTCGCCGATCAGCGACTCGACGAGGAGGTTGACCCGGGCGGTCTCCGCGGACGATCTCAGAGATTTCTCAGTTGCGTCGCCGAGAAGAAAGGCCTTTAGCAACCCTTTAAATGGGTTTGAGGAGAGAGAGGAGGAGGAAGAGGAGATAAAGATGGAGATGGGCTTTATTGCTTCTGGGTTTGGCGGAACGGCGTCGTTGGGATTGCCGGAGTTTGAGGGGTGTGAGGCGGGGTTGAGGGAGAACAGGGGGTTGCTGAGCGTTTTGGATGGGAGTGGCGTTGGTGGAGGAGGCGGCAAGATCTGCGGTGGTAATGGCGGAGGGAGTGGTGGATCGGACGAAGGAGATGGTGGGAGCAATGGGTTTTGGGAATCGAATCAAGGCGGTGCGAGCACTGATGCGTACTACCAGAAAATGATCGACGCTAATCCTAGAAATCCCATGCTACTTAGCAATTATGCTCGATTTTTGAAAGACGTTCGAGGGGATTTCGAAAAAGCCGAAGAATACTGCGGGAGAGCAATTCTGGCGGGCCCGAACGACGGAAATGTTCTGTCAATGTTTGCGGATTTGGTATGGCAGATTCATAAGGATGCTCCCAGAGCTCAGTCTTACTTTGATCAAGCTGTTCAAGCTGCCCCTGATGATAGTTATGTTCTAGCATCATATGCGAAATTCCTCTGGGATTCGGAGGAGGAGGAGGAGGAAGACGAAGAGGAAGACGAGGAGGAGAATGTGAAAGAAGGGGCGAATAACAGGGCTTCGGCAACCAATTTGTTTCATGGAATTCCTCCCGTACCACCTCCATTAGCTGCTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

326

Amino Acids

34.95

Weight (kDa)

4.43

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AclWI GGATC 1 cut(s) 493
AcsI RAATTY 3 cut(s) 99, 827, 939
AcyI GRCGYC 3 cut(s) 23, 131, 347
AfaI GTAC 2 cut(s) 557, 951
AfiI CCNNNNNNNGG 2 cut(s) 266, 695
AgsI TTSAA 2 cut(s) 625, 785
AluBI AGCT 5 cut(s) 15, 758, 779, 788, 965
AluI AGCT 5 cut(s) 15, 758, 779, 788, 965
Alw21I GWGCWC 4 cut(s) 17, 33, 548, 760
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 493
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 2 cut(s) 246, 685
ApaI GGGCCC 1 cut(s) 689
ApeKI GCWGC 5 cut(s) 43, 788, 965, 968, 971
ApoI RAATTY 3 cut(s) 99, 827, 939
AspS9I GGNCC 2 cut(s) 685, 686
AsuC2I CCSGG 2 cut(s) 190, 191
AsuII TTCGAA 1 cut(s) 645
AvaI CYCGRG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 689
BanII GRGCYC 3 cut(s) 17, 689, 760
BbsI GAAGAC 2 cut(s) 867, 879
Bbv12I GWGCWC 4 cut(s) 17, 33, 548, 760
BbvI GCAGC 5 cut(s) 30, 775, 952, 955, 958
BccI CCATC 4 cut(s) 301, 307, 416, 494
BceAI ACGGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 190, 191
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 585, 812
BglII AGATCT 1 cut(s) 453
BisI GCNGC 7 cut(s) 44, 47, 448, 789, 966, 969, 972
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 7 cut(s) 45, 48, 449, 790, 967, 970, 973
Bme1390I CCNGG 2 cut(s) 190, 191
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 685, 686
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 2 cut(s) 190, 191
BmsI GCATC 3 cut(s) 541, 736, 824
BpiI GAAGAC 2 cut(s) 867, 879
Bpu1102I GCTNAGC 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 645
BpuMI CCSGG 2 cut(s) 190, 191
BsaHI GRCGYC 3 cut(s) 23, 131, 347
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 189, 201
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 695
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 2 cut(s) 38, 517
BseDI CCNNGG 2 cut(s) 189, 201
BseGI GGATG 2 cut(s) 427, 751
BseLI CCNNNNNNNGG 2 cut(s) 266, 695
BseMI GCAATG 2 cut(s) 38, 517
BseMII CTCAG 4 cut(s) 226, 237, 401, 773
BseSI GKGCMC 1 cut(s) 689
BseXI GCAGC 5 cut(s) 30, 775, 952, 955, 958
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 248, 687
BsiHKAI GWGCWC 4 cut(s) 17, 33, 548, 760
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 4 cut(s) 26, 83, 190, 362
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 266, 695
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 2 cut(s) 248, 687
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 645
Bsp120I GGGCCC 1 cut(s) 685
Bsp1286I GDGCHC 5 cut(s) 17, 33, 548, 689, 760
Bsp143I GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
Bsp1720I GCTNAGC 1 cut(s) 410
BspANI GGCC 2 cut(s) 248, 687
BspCNI CTCAG 4 cut(s) 225, 236, 402, 772
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 645
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 2 cut(s) 38, 517
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 189, 201
BssMI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
BssNI GRCGYC 3 cut(s) 23, 131, 347
Bst6I CTCTTC 2 cut(s) 288, 861
BstACI GRCGYC 3 cut(s) 23, 131, 347
BstAPI GCANNNNNTGC 2 cut(s) 456, 821
BstBI TTCGAA 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 544, 685
BstDEI CTNAG 5 cut(s) 212, 223, 410, 602, 759
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 427, 751
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 7 cut(s) 76, 165, 211, 456, 488, 573, 775
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
BstMWI GCNNNNNNNGC 9 cut(s) 151, 200, 456, 543, 680, 755, 785, 821, 971
BstSCI CCNGG 2 cut(s) 188, 189
BstSLI GKGCMC 1 cut(s) 689
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 5 cut(s) 30, 775, 952, 955, 958
BstV2I GAAGAC 2 cut(s) 867, 879
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BsuRI GGCC 2 cut(s) 248, 687
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 427, 751
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 544, 685
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 685, 686
Cfr42I CCGCGG 1 cut(s) 204
Cfr9I CCCGGG 1 cut(s) 189
CseI GACGC 5 cut(s) 31, 120, 219, 336, 584
Csp6I GTAC 2 cut(s) 556, 950
CviAII CATG 2 cut(s) 595, 935
CviQI GTAC 2 cut(s) 556, 950
DdeI CTNAG 5 cut(s) 212, 223, 410, 602, 759
DpnI GATC 7 cut(s) 75, 164, 210, 455, 487, 572, 774
DpnII GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
DraI TTTAAA 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 288, 861
EarI CTCTTC 2 cut(s) 288, 861
EciI GGCGGA 2 cut(s) 354, 486
Ecl136II GAGCTC 2 cut(s) 15, 758
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 3 cut(s) 17, 689, 760
Eco31I GGTCTC 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 15, 758
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 2 cut(s) 15, 758
EcoRI GAATTC 1 cut(s) 939
EcoT38I GRGCYC 3 cut(s) 17, 689, 760
FaeI CATG 2 cut(s) 598, 938
FaiI YATR 9 cut(s) 596, 612, 730, 741, 807, 820, 822, 936, 976
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 594, 934
FauI CCCGC 4 cut(s) 102, 376, 659, 676
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 7 cut(s) 44, 47, 448, 789, 966, 969, 972
FokI GGATG 2 cut(s) 434, 758
FriOI GRGCYC 3 cut(s) 17, 689, 760
Fsp4HI GCNGC 7 cut(s) 44, 47, 448, 789, 966, 969, 972
FspBI CTAG 2 cut(s) 585, 812
GluI GCNGC 7 cut(s) 44, 47, 448, 789, 966, 969, 972
HaeIII GGCC 2 cut(s) 248, 687
HapII CCGG 4 cut(s) 26, 83, 190, 362
HgaI GACGC 5 cut(s) 31, 120, 219, 336, 584
Hin1I GRCGYC 3 cut(s) 23, 131, 347
Hin1II CATG 2 cut(s) 598, 938
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 6 cut(s) 59, 170, 524, 529, 736, 839
HpaII CCGG 4 cut(s) 26, 83, 190, 362
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 4 cut(s) 73, 215, 490, 844
Hpy188III TCNNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 8 cut(s) 25, 136, 139, 178, 235, 352, 578, 698
HpyAV CCTTC 2 cut(s) 488, 890
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 1 cut(s) 974
HpyF10VI GCNNNNNNNGC 9 cut(s) 151, 200, 456, 543, 680, 755, 785, 821, 971
HpyF3I CTNAG 5 cut(s) 212, 223, 410, 602, 759
HpySE526I ACGT 1 cut(s) 630
Hsp92I GRCGYC 3 cut(s) 23, 131, 347
Hsp92II CATG 2 cut(s) 598, 938
Ksp22I TGATCA 1 cut(s) 772
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
LmnI GCTCC 4 cut(s) 12, 119, 507, 754
Lsp1109I GCAGC 5 cut(s) 30, 775, 952, 955, 958
LweI GCATC 3 cut(s) 541, 736, 824
MaeI CTAG 2 cut(s) 585, 812
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 118
MalI GATC 7 cut(s) 75, 164, 210, 455, 487, 572, 774
MboI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
MboII GAAGA 6 cut(s) 252, 305, 668, 872, 878, 884
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 5 cut(s) 17, 33, 548, 689, 760
MluCI AATT 7 cut(s) 34, 99, 607, 675, 827, 925, 939
MlyI GAGTC 2 cut(s) 53, 164
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 4 cut(s) 26, 83, 190, 362
MspR9I CCNGG 2 cut(s) 190, 191
Mva1269I GAATGC 1 cut(s) 49
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 9 cut(s) 151, 200, 456, 543, 680, 755, 785, 821, 971
NciI CCSGG 2 cut(s) 190, 191
NdeI CATATG 1 cut(s) 820
NdeII GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
NlaIII CATG 2 cut(s) 598, 938
NlaIV GGNNCC 1 cut(s) 687
NmeAIII GCCGAG 2 cut(s) 107, 261
NspV TTCGAA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 134, 651
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 4 cut(s) 524, 529, 736, 839
PkrI GCNGC 7 cut(s) 45, 48, 449, 790, 967, 970, 973
PleI GAGTC 2 cut(s) 53, 164
PpsI GAGTC 2 cut(s) 53, 164
Psp124BI GAGCTC 2 cut(s) 17, 760
PspN4I GGNNCC 1 cut(s) 687
PspOMI GGGCCC 1 cut(s) 685
PspPI GGNCC 2 cut(s) 685, 686
PsuI RGATCY 1 cut(s) 453
RsaI GTAC 2 cut(s) 557, 951
RsaNI GTAC 2 cut(s) 556, 950
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 2 cut(s) 17, 760
SacII CCGCGG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 7 cut(s) 44, 47, 448, 789, 966, 969, 972
Sau3AI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
Sau96I GGNCC 2 cut(s) 685, 686
SchI GAGTC 2 cut(s) 53, 164
ScrFI CCNGG 2 cut(s) 190, 191
SduI GDGCHC 5 cut(s) 17, 33, 548, 689, 760
SetI ASST 8 cut(s) 17, 185, 633, 760, 781, 790, 958, 967
SfaNI GCATC 3 cut(s) 541, 736, 824
Sfr303I CCGCGG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 645
SgrAI CRCCGGYG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 7 cut(s) 34, 99, 607, 675, 827, 925, 939
SseBI AGGCCT 1 cut(s) 248
SspMI CTAG 2 cut(s) 585, 812
SstI GAGCTC 2 cut(s) 17, 760
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 188, 189
TaiI ACGT 1 cut(s) 633
TaqI TCGA 8 cut(s) 20, 104, 173, 527, 573, 616, 634, 645
TasI AATT 7 cut(s) 34, 99, 607, 675, 827, 925, 939
TauI GCSGC 2 cut(s) 49, 450
TfiI GAWTC 4 cut(s) 524, 529, 736, 839
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 553
TseI GCWGC 5 cut(s) 43, 788, 965, 968, 971
TspDTI ATGAA 3 cut(s) 27, 728, 923
TspGWI ACGGA 3 cut(s) 25, 106, 711
TspMI CCCGGG 1 cut(s) 189
TspRI CASTG 1 cut(s) 553
XapI RAATTY 3 cut(s) 99, 827, 939
XmaI CCCGGG 1 cut(s) 189
XspI CTAG 2 cut(s) 585, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.