RchiOBHm_Chr2g0088211
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010827
Physical Location & Seq
Reverse (-)
2822529 .. 2824465
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46359

Sequence Viewer

Length: 900 bp
ATGCTTCTACGAAGCTCATCGTCGCCGATACTAAACTCATGGCTCCCCCACTCCAAAGACTCGGGTCTCGGGTCGTCCTCCTCGCCCGAGCCCGAAATGGTGCCCCAAATCCCCCGAACCTGCGCCATTTCCCTCAGGTCTCCTCTTTCCGTATCTCGTAAAACAAACCAACACCTGATCACTCTCACGCGCGCCCGCTCCGACGCCGATCTCGGCGGCAGCCACCAGCGGAGGCCGCCGTTCGCGAACACGTTGAACGGGTTCGAGGAGATAGGAGAGGAGGCTGGTTACGGCGGAGGAGGAGTGAGGAGGACGATGTCGTTGGGATTGGCGGAGGTGGAGGGGTGTGAGATGGGGACGAGAGAGAATATCGGGTTGTTGAGCGGTTTGGTTGGGGGTGGGGACGGCGGAGGCAAGATCTGCGGCGGTAATGGCGGCGGATCGGACGGTGGTGGCGAATCGGATCGGGGAAGCGCGACCGCCGAGACGCATTATCGGAATATGATCGAGGCTGATCCCGGCAATCCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAAAGAGGTTGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCAATCTTGGTTAACCCAAACGATGGAAATGTTTTATCCATGTATGCGGATTTGGTATGGCAAATTCACAAGGATGCTGCGAGAGCCGAGACTTATTTTGATCAAGCTGTTAAAGCTTCACCTGATGATTGTTATGTTCAAGCATCATATGCTCATTTCCTTTGGGATTCTGAGGAAGACGAAGATGAGGAGGAGGAGAAGGAGGTGAAAGAAGAAGGCAGCAACCGAGCACCAGCACACAAGTTGATTCACGGAGTTCCCCCTTCCCCGCCTCCATTAGCTGCTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

299

Amino Acids

31.78

Weight (kDa)

4.89

Isoelectric Point (pI)

64.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 159 - 203 4.1e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 629
AccBSI CCGCTC 2 cut(s) 198, 384
AccII CGCG 4 cut(s) 190, 192, 245, 476
AclWI GGATC 3 cut(s) 448, 471, 509
AcsI RAATTY 2 cut(s) 574, 669
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 256, 746
AluBI AGCT 4 cut(s) 15, 713, 722, 887
AluI AGCT 4 cut(s) 15, 713, 722, 887
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 4 cut(s) 71, 144, 479, 689
AlwI GGATC 3 cut(s) 448, 471, 509
Ama87I CYCGRG 3 cut(s) 61, 68, 86
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 6 cut(s) 219, 683, 825, 887, 890, 893
ApoI RAATTY 2 cut(s) 574, 669
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 4 cut(s) 125, 192, 194, 476
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 717, 823
AvaI CYCGRG 3 cut(s) 61, 68, 86
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 6 cut(s) 231, 670, 837, 874, 877, 880
BccI CCATC 2 cut(s) 346, 623
BceAI ACGGC 3 cut(s) 223, 307, 421
BclI TGATCA 2 cut(s) 177, 706
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 4 cut(s) 71, 144, 479, 689
BfaI CTAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 1 cut(s) 519
BmeT110I CYCGRG 3 cut(s) 61, 68, 86
BmiI GGNNCC 2 cut(s) 44, 102
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 670, 758
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 71, 144
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse21I CCTNAGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 148, 768
BsePI GCGCGC 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 6 cut(s) 231, 670, 837, 874, 877, 880
Bsh1236I CGCG 4 cut(s) 190, 192, 245, 476
Bsh1285I CGRYCG 1 cut(s) 480
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 838
BsiHKCI CYCGRG 3 cut(s) 61, 68, 86
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 2 cut(s) 370, 416
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 4 cut(s) 71, 144, 479, 689
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 2 cut(s) 370, 416
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 2 cut(s) 71, 144
BsoBI CYCGRG 3 cut(s) 61, 68, 86
Bsp1286I GDGCHC 3 cut(s) 93, 105, 838
Bsp143I GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
Bsp68I TCGCGA 1 cut(s) 245
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 147, 769
BspFNI CGCG 4 cut(s) 190, 192, 245, 476
BspLI GGNNCC 2 cut(s) 44, 102
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 448, 471, 509
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 71, 144
BsrBI CCGCTC 2 cut(s) 198, 384
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 449, 599
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 420, 755
BstC8I GCNNGC 2 cut(s) 192, 196
BstDEI CTNAG 4 cut(s) 134, 536, 549, 777
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 4 cut(s) 190, 192, 245, 476
BstHHI GCGC 4 cut(s) 125, 192, 194, 476
BstKTI GATC 8 cut(s) 180, 211, 420, 443, 466, 507, 517, 709
BstMAI GTCTC 4 cut(s) 71, 144, 479, 689
BstMBI GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
BstMCI CGRYCG 1 cut(s) 480
BstMWI GCNNNNNNNGC 7 cut(s) 235, 420, 432, 689, 719, 755, 893
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 4 cut(s) 190, 192, 245, 476
BstV1I GCAGC 6 cut(s) 231, 670, 837, 874, 877, 880
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 685
BtuMI TCGCGA 1 cut(s) 245
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 192, 196
CfoI GCGC 4 cut(s) 125, 192, 194, 476
CseI GACGC 2 cut(s) 212, 496
Csp6I GTAC 1 cut(s) 595
CviAII CATG 2 cut(s) 39, 646
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 4 cut(s) 134, 536, 549, 777
DpnI GATC 8 cut(s) 179, 210, 419, 442, 465, 506, 516, 708
DpnII GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
EciI GGCGGA 4 cut(s) 309, 347, 423, 453
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 2 cut(s) 71, 144
Eco81I CCTNAGG 1 cut(s) 134
Eco88I CYCGRG 3 cut(s) 61, 68, 86
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 2 cut(s) 42, 649
FaiI YATR 9 cut(s) 40, 503, 546, 647, 651, 664, 741, 754, 756
FaqI GGGAC 2 cut(s) 370, 416
FatI CATG 2 cut(s) 38, 645
FauI CCCGC 2 cut(s) 203, 882
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 2 cut(s) 177, 706
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 93
FspBI CTAG 1 cut(s) 898
GlaI GCGC 4 cut(s) 124, 191, 193, 475
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 519
HgaI GACGC 2 cut(s) 212, 496
HhaI GCGC 4 cut(s) 125, 192, 194, 476
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 42, 649
Hin6I GCGC 4 cut(s) 123, 190, 192, 474
HinP1I GCGC 4 cut(s) 123, 190, 192, 474
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 4 cut(s) 59, 458, 773, 853
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 1 cut(s) 519
HphI GGTGA 2 cut(s) 717, 823
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 5 cut(s) 202, 445, 463, 498, 778
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 619
Hpy99I CGWCG 2 cut(s) 25, 206
HpyAV CCTTC 3 cut(s) 799, 815, 879
HpyCH4III ACNGT 2 cut(s) 449, 599
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 7 cut(s) 235, 420, 432, 689, 719, 755, 893
HpyF3I CTNAG 4 cut(s) 134, 536, 549, 777
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 42, 649
HspAI GCGC 4 cut(s) 123, 190, 192, 474
Ksp22I TGATCA 2 cut(s) 177, 706
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
LmnI GCTCC 2 cut(s) 48, 203
LpnPI CCDG 8 cut(s) 121, 133, 188, 239, 270, 532, 741, 852
Lsp1109I GCAGC 6 cut(s) 231, 670, 837, 874, 877, 880
LweI GCATC 2 cut(s) 670, 758
MaeI CTAG 1 cut(s) 898
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 287
MalI GATC 8 cut(s) 179, 210, 419, 442, 465, 506, 516, 708
MbiI CCGCTC 2 cut(s) 198, 384
MboI GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
MboII GAAGA 4 cut(s) 602, 794, 800, 830
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 93, 105, 838
MluCI AATT 2 cut(s) 574, 669
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 618, 717
MslI CAYNNNNRTG 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 519
MvnI CGCG 4 cut(s) 190, 192, 245, 476
MwoI GCNNNNNNNGC 7 cut(s) 235, 420, 432, 689, 719, 755, 893
NciI CCSGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 754
NdeII GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
NlaIII CATG 2 cut(s) 42, 649
NlaIV GGNNCC 2 cut(s) 44, 102
NmeAIII GCCGAG 3 cut(s) 192, 508, 718
NruI TCGCGA 1 cut(s) 245
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 458, 773, 853
PflFI GACNNNGTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 629
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 44, 102
PsuI RGATCY 1 cut(s) 417
PsyI GACNNNGTC 1 cut(s) 316
PteI GCGCGC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 2 cut(s) 618, 717
Sau3AI GATC 8 cut(s) 177, 208, 417, 440, 463, 504, 514, 706
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 3 cut(s) 93, 105, 838
SfaNI GCATC 2 cut(s) 670, 758
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 2 cut(s) 574, 669
SspMI CTAG 1 cut(s) 898
StyD4I CCNGG 1 cut(s) 517
TaaI ACNGT 2 cut(s) 449, 599
TaiI ACGT 1 cut(s) 254
TaqI TCGA 2 cut(s) 264, 507
TasI AATT 2 cut(s) 574, 669
TatI WGTACW 1 cut(s) 594
TauI GCSGC 4 cut(s) 219, 238, 426, 438
TfiI GAWTC 3 cut(s) 458, 773, 853
Tru1I TTAA 2 cut(s) 618, 717
Tru9I TTAA 2 cut(s) 618, 717
TseI GCWGC 6 cut(s) 219, 683, 825, 887, 890, 893
TspGWI ACGGA 2 cut(s) 139, 873
Tth111I GACNNNGTC 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 629
XapI RAATTY 2 cut(s) 574, 669
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 898
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.