FvH4_1g03080
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010827
Physical Location & Seq
Reverse (-)
1736530 .. 1738481
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03080.t2

Sequence Viewer

Length: 960 bp
ATGCTTCTACGTAGCTCATCGTCGCCGATACTCAACTCATGGCTCAAAGTCGACTCGGGTCTCGGGTCGTCGTCGCCCGAGCCCGAAATGGTGCACCAAATCCCCAGAACCAGCTCCATTTCGCTCTCCTCCAATGGCTCAAGATCTCCTCTCTCGATCTCTCGTAACTCGAAGCATCAGCAGCAGCTCGTCACAACTCTCACGCGCCGCGGCTCCGACGCCGACCTCGGCGACCATCGCAGACCGTCGTTCGCGAGCACGTTGAACGGGTTCGAGGAGGGAGAAGAGGAGGAGAGAGAAGTGTCCGAAGTATCCGCCGCGTTCGGGGGCGGATACGGCGGAGGAGGAGGAGTGAGGAGGACGATGTCGTTAGGGTTGGCGGAGGTGGAAGCGTGTGAGATTGGGACGAGGGAGAATATTGGGTTGTTGAGCGTTTTGGTTGGGGGTGGGGCCGGCGGAGGTAAGATCTCCGGTGGTAATGGCGGAGGAGGAGGAGGAGGAGGAGGTGGCGGAACGGACGGTGGAGATTCTATGAGCGCCGAGATGCATTATCAGAATATGATCGAGGCTGATCCTGGAAATCCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAAAGAGGTGGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCGATTTTGGCTAACCCAAACGATGGAGGTGTTTTATCCATGTATGCGGATTTGGTATGGCAGCTTCACAAGGATGCTGCCAGAGCCGAGACTTACTACGATCAAGCTGTTAAAGCTTCACCAGAGGATTGTTATGTTCAAGCATCTTATGCTCGTTTCCTTTGGGATTCTGAGGAAGATGAAGAGGAGGAGGAGGAGGAGGAGAAGGAAGTGGAAGAAGGCACAAACCGCGCACCAGCACACAAGTTGGTTCACGAAGTTCCATCTTCACCGACTCCTTTGGCTGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

320

Amino Acids

33.58

Weight (kDa)

4.63

Isoelectric Point (pI)

75.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 1 cut(s) 51
AccII CGCG 5 cut(s) 205, 210, 254, 320, 894
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 631
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 324, 686
AgsI TTSAA 2 cut(s) 265, 803
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 6 cut(s) 15, 114, 187, 727, 770, 779
AluI AGCT 6 cut(s) 15, 114, 187, 727, 770, 779
Alw21I GWGCWC 2 cut(s) 96, 260
Alw26I GTCTC 2 cut(s) 65, 746
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 566
Ama87I CYCGRG 3 cut(s) 55, 62, 77
AoxI GGCC 1 cut(s) 450
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 7 cut(s) 181, 184, 724, 740, 947, 950, 953
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 3 cut(s) 207, 539, 896
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 774, 924
AvaI CYCGRG 3 cut(s) 55, 62, 77
BaeGI GKGCMC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
Bbv12I GWGCWC 2 cut(s) 96, 260
BbvI GCAGC 7 cut(s) 193, 196, 727, 736, 934, 937, 940
BccI CCATC 3 cut(s) 243, 680, 934
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 2 cut(s) 322, 326
BcoDI GTCTC 2 cut(s) 65, 746
BfoI RGCGCY 1 cut(s) 540
BfuI GTATCC 2 cut(s) 322, 326
BglII AGATCT 2 cut(s) 143, 465
BmcAI AGTACT 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 576
BmeT110I CYCGRG 3 cut(s) 55, 62, 77
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 214, 451
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 4 cut(s) 184, 534, 727, 815
BoxI GACNNNNGTC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 208, 226
BsaWI WCCGGW 1 cut(s) 470
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 686
Bse118I RCCGGY 1 cut(s) 452
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 2 cut(s) 208, 226
BseGI GGATG 1 cut(s) 742
BseLI CCNNNNNNNGG 2 cut(s) 324, 686
BseMII CTCAG 1 cut(s) 825
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 7 cut(s) 193, 196, 727, 736, 934, 937, 940
Bsh1236I CGCG 5 cut(s) 205, 210, 254, 320, 894
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 96, 260
BsiHKCI CYCGRG 3 cut(s) 55, 62, 77
BsiSI CCGG 2 cut(s) 453, 471
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 2 cut(s) 324, 686
BsmAI GTCTC 2 cut(s) 65, 746
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 3 cut(s) 55, 62, 77
Bsp1286I GDGCHC 3 cut(s) 84, 96, 260
Bsp143I GATC 6 cut(s) 143, 156, 465, 561, 571, 763
Bsp68I TCGCGA 1 cut(s) 254
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 826
BspFNI CGCG 5 cut(s) 205, 210, 254, 320, 894
BspLI GGNNCC 2 cut(s) 214, 451
BspPI GGATC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 2 cut(s) 208, 226
BssMI GATC 6 cut(s) 143, 156, 465, 561, 571, 763
BssNI GRCGYC 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 3 cut(s) 246, 521, 656
Bst6I CTCTTC 3 cut(s) 279, 642, 840
BstACI GRCGYC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 256, 454
BstDEI CTNAG 4 cut(s) 593, 606, 834, 957
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 742
BstFNI CGCG 5 cut(s) 205, 210, 254, 320, 894
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 3 cut(s) 207, 539, 896
BstKTI GATC 6 cut(s) 146, 159, 468, 564, 574, 766
BstMAI GTCTC 2 cut(s) 65, 746
BstMBI GATC 6 cut(s) 143, 156, 465, 561, 571, 763
BstMWI GCNNNNNNNGC 9 cut(s) 181, 237, 336, 671, 746, 776, 812, 891, 953
BstNI CCWGG 1 cut(s) 576
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 574
BstSLI GKGCMC 1 cut(s) 96
BstSNI TACGTA 1 cut(s) 11
BstUI CGCG 5 cut(s) 205, 210, 254, 320, 894
BstV1I GCAGC 7 cut(s) 193, 196, 727, 736, 934, 937, 940
BstX2I RGATCY 2 cut(s) 143, 465
BstYI RGATCY 2 cut(s) 143, 465
BsuI GTATCC 2 cut(s) 322, 326
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 742
BtuMI TCGCGA 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 256, 454
CfoI GCGC 3 cut(s) 207, 539, 896
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 450
Cfr42I CCGCGG 1 cut(s) 211
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 652
CviAII CATG 2 cut(s) 39, 703
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 4 cut(s) 593, 606, 834, 957
DpnI GATC 6 cut(s) 145, 158, 467, 563, 573, 765
DpnII GATC 6 cut(s) 143, 156, 465, 561, 571, 763
Eam1104I CTCTTC 3 cut(s) 279, 642, 840
EarI CTCTTC 3 cut(s) 279, 642, 840
EciI GGCGGA 7 cut(s) 304, 345, 354, 395, 471, 498, 525
Eco105I TACGTA 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 65
Eco88I CYCGRG 3 cut(s) 55, 62, 77
EcoRII CCWGG 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 2 cut(s) 42, 706
FaiI YATR 9 cut(s) 40, 533, 560, 603, 704, 708, 721, 798, 813
FaqI GGGAC 1 cut(s) 418
FatI CATG 2 cut(s) 38, 702
FblI GTMKAC 1 cut(s) 51
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 1 cut(s) 84
GlaI GCGC 3 cut(s) 206, 538, 895
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 1 cut(s) 452
HapII CCGG 2 cut(s) 453, 471
HgaI GACGC 1 cut(s) 227
HhaI GCGC 3 cut(s) 207, 539, 896
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 2 cut(s) 42, 706
Hin6I GCGC 3 cut(s) 205, 537, 894
HinP1I GCGC 3 cut(s) 205, 537, 894
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 777
HinfI GANTC 4 cut(s) 53, 527, 830, 937
HpaII CCGG 2 cut(s) 453, 471
HphI GGTGA 2 cut(s) 774, 924
Hpy166II GTNNAC 3 cut(s) 52, 94, 916
Hpy188I TCNGA 4 cut(s) 217, 307, 555, 835
Hpy188III TCNNGA 4 cut(s) 141, 154, 253, 917
Hpy8I GTNNAC 3 cut(s) 52, 94, 916
Hpy99I CGWCG 5 cut(s) 25, 73, 76, 221, 250
HpyAV CCTTC 2 cut(s) 862, 875
HpyCH4III ACNGT 3 cut(s) 246, 521, 656
HpyCH4IV ACGT 2 cut(s) 10, 260
HpyCH4V TGCA 2 cut(s) 94, 547
HpyF10VI GCNNNNNNNGC 9 cut(s) 181, 237, 336, 671, 746, 776, 812, 891, 953
HpyF3I CTNAG 4 cut(s) 593, 606, 834, 957
HpySE526I ACGT 2 cut(s) 10, 260
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 42, 706
HspAI GCGC 3 cut(s) 205, 537, 894
KroI GCCGGC 1 cut(s) 452
KroNI GCCGGC 1 cut(s) 454
KspI CCGCGG 1 cut(s) 211
Kzo9I GATC 6 cut(s) 143, 156, 465, 561, 571, 763
LmnI GCTCC 2 cut(s) 119, 218
LpnPI CCDG 9 cut(s) 118, 124, 466, 484, 561, 588, 757, 798, 912
Lsp1109I GCAGC 7 cut(s) 193, 196, 727, 736, 934, 937, 940
LweI GCATC 4 cut(s) 184, 534, 727, 815
MaeII ACGT 2 cut(s) 10, 260
MaeIII GTNAC 2 cut(s) 164, 190
MalI GATC 6 cut(s) 145, 158, 467, 563, 573, 765
MboI GATC 6 cut(s) 143, 156, 465, 561, 571, 763
MboII GAAGA 6 cut(s) 296, 659, 851, 857, 890, 921
MflI RGATCY 2 cut(s) 143, 465
MhlI GDGCHC 3 cut(s) 84, 96, 260
MluCI AATT 1 cut(s) 631
MlyI GAGTC 2 cut(s) 47, 931
MmeI TCCRAC 1 cut(s) 240
Mph1103I ATGCAT 1 cut(s) 549
MroNI GCCGGC 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 2 cut(s) 453, 471
MspR9I CCNGG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 5 cut(s) 205, 210, 254, 320, 894
MwoI GCNNNNNNNGC 9 cut(s) 181, 237, 336, 671, 746, 776, 812, 891, 953
NaeI GCCGGC 1 cut(s) 454
NdeII GATC 6 cut(s) 143, 156, 465, 561, 571, 763
NgoMIV GCCGGC 1 cut(s) 452
NlaIII CATG 2 cut(s) 42, 706
NlaIV GGNNCC 2 cut(s) 214, 451
NmeAIII GCCGAG 3 cut(s) 207, 565, 775
NmuCI GTSAC 1 cut(s) 190
NruI TCGCGA 1 cut(s) 254
NsiI ATGCAT 1 cut(s) 549
PdiI GCCGGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 527, 830
PflFI GACNNNGTC 1 cut(s) 364
PflMI CCANNNNNTGG 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 574
PleI GAGTC 2 cut(s) 47, 931
PpsI GAGTC 2 cut(s) 47, 931
Ppu21I YACGTR 1 cut(s) 11
PshAI GACNNNNGTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 214, 451
PspPI GGNCC 1 cut(s) 450
PsuI RGATCY 2 cut(s) 143, 465
PsyI GACNNNGTC 1 cut(s) 364
RruI TCGCGA 1 cut(s) 254
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 735
SacII CCGCGG 1 cut(s) 211
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 774
Sau3AI GATC 6 cut(s) 143, 156, 465, 561, 571, 763
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 653
SchI GAGTC 2 cut(s) 47, 931
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 3 cut(s) 84, 96, 260
SfaNI GCATC 4 cut(s) 184, 534, 727, 815
Sfr303I CCGCGG 1 cut(s) 211
SgrBI CCGCGG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SnaBI TACGTA 1 cut(s) 11
Sse9I AATT 1 cut(s) 631
SspI AATATT 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 574
TaaI ACNGT 3 cut(s) 246, 521, 656
TaiI ACGT 2 cut(s) 13, 263
TaqI TCGA 5 cut(s) 51, 155, 170, 273, 564
TasI AATT 1 cut(s) 631
TatI WGTACW 1 cut(s) 651
TauI GCSGC 3 cut(s) 210, 213, 320
TfiI GAWTC 2 cut(s) 527, 830
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 7 cut(s) 181, 184, 724, 740, 947, 950, 953
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 858
TspGWI ACGGA 1 cut(s) 530
Tth111I GACNNNGTC 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 92
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 653
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.