pycom15g15300
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010827
Physical Location & Seq
Reverse (-)
10644091 .. 10645263
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15300.1

Sequence Viewer

Length: 978 bp
ATGCTTCTACGGAGCTCATCGACGCCGGTGCCCAACTCATGGCTGCAGTATTCCAAAGATTCAACATTTTTCGATCAGCAACCGGAAATGGTGCAGCAAATCCAGAGAACTCGCTCCGTTACCCTCTCGGCGTCGTCGCGGTCGCCCCTTTTGCTGTCGCCGATCAGCGACTCGGGTAGGAGGTTGACCCGGGCGGTCTCCGAGGACGATCTCAGAGATTTCATGGTGGCGCCGCCGAAAAGAAAGTCCTTCAGCATCCCGATGGATGGGTTTGAGGAGAGAGAGGAGCAAAACGAGATAAAAATGGAGATGGGTTTTTCTGCCTCTGGGTTGGGCAGAACGGCCTCCTTGGGATTGGCGGAGTTGGAGAGGTGTGAGGCCGGGTTGAGGGAGGACAGGAGGTTGCTGAGCGATTTGGAAGGGGGCGGCGTTGGTGGAGGAGGCGGCAAGATCTGCGGTGGTAATGGCGGAGGGAGTGGTGAATCGGACGACGGAGATGATGAGGGCAATGGATTTTGGGAATCGAATCAAGGCGGTGCGAGCACCGATTTGTACTACCAGAAAATTATTGACGCTAATCCTGGAAATCCCATGCTCCTTGGCAATTATGCTCGCTTTTTGAAAGAGGTTCAAGAGGATTTCGGAAAAGCCGAAGAGTACTGCGGGAGAGCAATTCTGGCGTGTCCGAATGACGGAACTGTTCTGTCAATGTTTGCGGATTTGGTATGGCAGATTCACAAGGATGCTCCAAGAGCTCAGTCTTACTTTGACCAAGCTGTTCAAGCTGCCCCCGATGATAGTTATGTTCTAGCATCATATGCCAAATTTCTCTGGGACTCCGAGGAGGAAGACGAGGAGGAGGACGAGGAGGAGGACGAGGAGGTGAACCTGAAAGAAGGGGGGAATAACAGAGCGTCGCCAACCAATTTGTTTCCTGGAATTCCTCCTTCACCACCTCCATTAGCTGCTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

326

Amino Acids

35.39

Weight (kDa)

4.34

Isoelectric Point (pI)

63.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 229
AccB7I CCANNNNNTGG 1 cut(s) 39
AccII CGCG 1 cut(s) 139
AcsI RAATTY 2 cut(s) 824, 939
AcuI CTGAAG 1 cut(s) 235
AcyI GRCGYC 3 cut(s) 23, 131, 230
AfaI GTAC 2 cut(s) 554, 659
AfiI CCNNNNNNNGG 4 cut(s) 39, 266, 387, 692
AgsI TTSAA 4 cut(s) 63, 622, 632, 782
AjnI CCWGG 2 cut(s) 580, 934
AluBI AGCT 5 cut(s) 15, 755, 776, 785, 965
AluI AGCT 5 cut(s) 15, 755, 776, 785, 965
Alw21I GWGCWC 3 cut(s) 17, 545, 757
Alw26I GTCTC 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 172, 189
AoxI GGCC 2 cut(s) 342, 378
ApeKI GCWGC 6 cut(s) 43, 94, 785, 965, 968, 971
ApoI RAATTY 2 cut(s) 824, 939
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 232
AsuC2I CCSGG 3 cut(s) 190, 191, 382
AsuHPI GGTGA 3 cut(s) 491, 895, 942
AvaI CYCGRG 2 cut(s) 172, 189
BaeGI GKGCMC 1 cut(s) 33
BanI GGYRCC 2 cut(s) 28, 229
BanII GRGCYC 2 cut(s) 17, 757
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 3 cut(s) 17, 545, 757
BbvI GCAGC 6 cut(s) 30, 106, 772, 952, 955, 958
BccI CCATC 3 cut(s) 256, 260, 304
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 2 cut(s) 582, 936
BcnI CCSGG 3 cut(s) 190, 191, 382
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 233
BglII AGATCT 1 cut(s) 450
BisI GCNGC 9 cut(s) 44, 95, 233, 427, 445, 786, 966, 969, 972
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 9 cut(s) 45, 96, 234, 428, 446, 787, 967, 970, 973
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 5 cut(s) 190, 191, 382, 582, 936
BmeT110I CYCGRG 2 cut(s) 172, 189
BmiI GGNNCC 2 cut(s) 30, 231
BmrFI CCNGG 5 cut(s) 190, 191, 382, 582, 936
BmsI GCATC 3 cut(s) 264, 733, 821
BpiI GAAGAC 1 cut(s) 855
Bpu1102I GCTNAGC 1 cut(s) 407
BpuMI CCSGG 3 cut(s) 190, 191, 382
BsaHI GRCGYC 3 cut(s) 23, 131, 230
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 5 cut(s) 189, 201, 348, 598, 840
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 266, 387, 692
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 2 cut(s) 582, 936
BseDI CCNNGG 5 cut(s) 189, 201, 348, 598, 840
BseGI GGATG 3 cut(s) 255, 271, 748
BseLI CCNNNNNNNGG 4 cut(s) 39, 266, 387, 692
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 3 cut(s) 226, 398, 770
BseRI GAGGAG 9 cut(s) 290, 299, 453, 857, 869, 872, 881, 884, 893
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 6 cut(s) 30, 106, 772, 952, 955, 958
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 344, 380
BshNI GGYRCC 2 cut(s) 28, 229
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 3 cut(s) 17, 545, 757
BsiHKCI CYCGRG 2 cut(s) 172, 189
BsiSI CCGG 4 cut(s) 26, 83, 190, 381
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 4 cut(s) 39, 266, 387, 692
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 848
BsnI GGCC 2 cut(s) 344, 380
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 2 cut(s) 172, 189
Bsp1286I GDGCHC 4 cut(s) 17, 33, 545, 757
Bsp143I GATC 4 cut(s) 73, 162, 208, 450
Bsp1720I GCTNAGC 1 cut(s) 407
BspANI GGCC 2 cut(s) 344, 380
BspCNI CTCAG 3 cut(s) 225, 399, 769
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 30, 231
BspMAI CTGCAG 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 28, 229
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 5 cut(s) 189, 201, 348, 598, 840
BssMI GATC 4 cut(s) 73, 162, 208, 450
BssNI GRCGYC 3 cut(s) 23, 131, 230
BssT1I CCWWGG 2 cut(s) 348, 598
Bst2UI CCWGG 2 cut(s) 582, 936
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 3 cut(s) 23, 131, 230
BstAPI GCANNNNNTGC 2 cut(s) 453, 818
BstC8I GCNNGC 2 cut(s) 541, 613
BstDEI CTNAG 3 cut(s) 212, 407, 756
BstF5I GGATG 3 cut(s) 255, 271, 748
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 76, 165, 211, 453
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 73, 162, 208, 450
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 8 cut(s) 151, 453, 540, 677, 752, 782, 818, 971
BstNI CCWGG 2 cut(s) 582, 936
BstSCI CCNGG 5 cut(s) 188, 189, 380, 580, 934
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 6 cut(s) 30, 106, 772, 952, 955, 958
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 2 cut(s) 344, 380
BtsCI GGATG 3 cut(s) 255, 271, 748
Cac8I GCNNGC 2 cut(s) 541, 613
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 25
Cfr9I CCCGGG 1 cut(s) 189
CseI GACGC 4 cut(s) 31, 120, 581, 903
Csp6I GTAC 2 cut(s) 553, 658
CviAII CATG 3 cut(s) 39, 223, 592
CviJI RGCY 9 cut(s) 15, 43, 344, 380, 650, 755, 776, 785, 965
CviKI_1 RGCY 9 cut(s) 15, 43, 344, 380, 650, 755, 776, 785, 965
CviQI GTAC 2 cut(s) 553, 658
DdeI CTNAG 3 cut(s) 212, 407, 756
DinI GGCGCC 1 cut(s) 231
DpnI GATC 4 cut(s) 75, 164, 210, 452
DpnII GATC 4 cut(s) 73, 162, 208, 450
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
EciI GGCGGA 2 cut(s) 374, 483
Ecl136II GAGCTC 2 cut(s) 15, 755
Eco130I CCWWGG 2 cut(s) 348, 598
Eco24I GRGCYC 2 cut(s) 17, 757
Eco31I GGTCTC 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 15, 755
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 172, 189
EcoICRI GAGCTC 2 cut(s) 15, 755
EcoRI GAATTC 1 cut(s) 939
EcoRII CCWGG 2 cut(s) 580, 934
EcoT14I CCWWGG 2 cut(s) 348, 598
EcoT38I GRGCYC 2 cut(s) 17, 757
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 348, 598
FaeI CATG 3 cut(s) 42, 226, 595
FaiI YATR 9 cut(s) 40, 224, 593, 609, 727, 804, 817, 819, 976
FaqI GGGAC 1 cut(s) 848
FatI CATG 3 cut(s) 38, 222, 591
FauI CCCGC 1 cut(s) 656
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 9 cut(s) 44, 95, 233, 427, 445, 786, 966, 969, 972
FokI GGATG 3 cut(s) 242, 278, 755
FriOI GRGCYC 2 cut(s) 17, 757
Fsp4HI GCNGC 9 cut(s) 44, 95, 233, 427, 445, 786, 966, 969, 972
FspBI CTAG 1 cut(s) 809
GlaI GCGC 1 cut(s) 231
GluI GCNGC 9 cut(s) 44, 95, 233, 427, 445, 786, 966, 969, 972
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 344, 380
HapII CCGG 4 cut(s) 26, 83, 190, 381
HgaI GACGC 4 cut(s) 31, 120, 581, 903
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 3 cut(s) 23, 131, 230
Hin1II CATG 3 cut(s) 42, 226, 595
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 7 cut(s) 59, 170, 482, 521, 526, 733, 836
HpaII CCGG 4 cut(s) 26, 83, 190, 381
HphI GGTGA 3 cut(s) 491, 895, 942
Hpy166II GTNNAC 2 cut(s) 186, 886
Hpy188I TCNGA 6 cut(s) 202, 215, 487, 644, 687, 841
Hpy188III TCNNGA 3 cut(s) 103, 259, 632
Hpy8I GTNNAC 2 cut(s) 186, 886
Hpy99I CGWCG 5 cut(s) 25, 136, 139, 494, 919
HpyAV CCTTC 4 cut(s) 259, 413, 890, 957
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4V TGCA 3 cut(s) 46, 94, 974
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 453, 540, 677, 752, 782, 818, 971
HpyF3I CTNAG 3 cut(s) 212, 407, 756
Hsp92I GRCGYC 3 cut(s) 23, 131, 230
Hsp92II CATG 3 cut(s) 42, 226, 595
HspAI GCGC 1 cut(s) 230
KasI GGCGCC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 73, 162, 208, 450
LmnI GCTCC 5 cut(s) 12, 119, 286, 600, 751
Lsp1109I GCAGC 6 cut(s) 30, 106, 772, 952, 955, 958
LweI GCATC 3 cut(s) 264, 733, 821
MaeI CTAG 1 cut(s) 809
MaeIII GTNAC 1 cut(s) 118
MalI GATC 4 cut(s) 75, 164, 210, 452
MboI GATC 4 cut(s) 73, 162, 208, 450
MboII GAAGA 2 cut(s) 665, 860
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 4 cut(s) 17, 33, 545, 757
MluCI AATT 6 cut(s) 564, 604, 672, 824, 925, 939
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 2 cut(s) 164, 830
MmeI TCCRAC 1 cut(s) 345
MslI CAYNNNNRTG 2 cut(s) 260, 741
MspI CCGG 4 cut(s) 26, 83, 190, 381
MspR9I CCNGG 5 cut(s) 190, 191, 382, 582, 936
MvaI CCWGG 2 cut(s) 582, 936
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 8 cut(s) 151, 453, 540, 677, 752, 782, 818, 971
NarI GGCGCC 1 cut(s) 230
NciI CCSGG 3 cut(s) 190, 191, 382
NdeI CATATG 1 cut(s) 817
NdeII GATC 4 cut(s) 73, 162, 208, 450
NlaIII CATG 3 cut(s) 42, 226, 595
NlaIV GGNNCC 2 cut(s) 30, 231
NmeAIII GCCGAG 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PfeI GAWTC 5 cut(s) 59, 482, 521, 526, 733
PflMI CCANNNNNTGG 1 cut(s) 39
PfoI TCCNGGA 2 cut(s) 580, 934
PkrI GCNGC 9 cut(s) 45, 96, 234, 428, 446, 787, 967, 970, 973
PleI GAGTC 2 cut(s) 164, 830
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 2 cut(s) 164, 830
Psp124BI GAGCTC 2 cut(s) 17, 757
Psp6I CCWGG 2 cut(s) 580, 934
PspGI CCWGG 2 cut(s) 580, 934
PspN4I GGNNCC 2 cut(s) 30, 231
PstI CTGCAG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 2 cut(s) 554, 659
RsaNI GTAC 2 cut(s) 553, 658
RseI CAYNNNNRTG 2 cut(s) 260, 741
SacI GAGCTC 2 cut(s) 17, 757
SatI GCNGC 9 cut(s) 44, 95, 233, 427, 445, 786, 966, 969, 972
Sau3AI GATC 4 cut(s) 73, 162, 208, 450
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 2 cut(s) 164, 830
ScrFI CCNGG 5 cut(s) 190, 191, 382, 582, 936
SduI GDGCHC 4 cut(s) 17, 33, 545, 757
SfaNI GCATC 3 cut(s) 264, 733, 821
SfcI CTRYAG 1 cut(s) 44
SfoI GGCGCC 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 191
SmiMI CAYNNNNRTG 2 cut(s) 260, 741
Sse9I AATT 6 cut(s) 564, 604, 672, 824, 925, 939
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 1 cut(s) 809
SstI GAGCTC 2 cut(s) 17, 757
StyD4I CCNGG 5 cut(s) 188, 189, 380, 580, 934
StyI CCWWGG 2 cut(s) 348, 598
TaaI ACNGT 1 cut(s) 700
TaqI TCGA 3 cut(s) 20, 72, 524
TasI AATT 6 cut(s) 564, 604, 672, 824, 925, 939
TatI WGTACW 2 cut(s) 552, 657
TauI GCSGC 3 cut(s) 235, 429, 447
TfiI GAWTC 5 cut(s) 59, 482, 521, 526, 733
TseI GCWGC 6 cut(s) 43, 94, 785, 965, 968, 971
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 4 cut(s) 25, 106, 507, 708
TspMI CCCGGG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 39
XapI RAATTY 2 cut(s) 824, 939
XmaI CCCGGG 1 cut(s) 189
XspI CTAG 1 cut(s) 809
ZrmI AGTACT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.