MD02G1030000.v1.1
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010827
Physical Location & Seq
Reverse (-)
2318181 .. 2319608
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1030000.v1.1.491

Sequence Viewer

Length: 975 bp
ATGCTTCTACGGAGCTCATCGACGCCGGTGCTCAATTCATTGCTGCCGCACTCCAAAGACTCGACATTTTCCGATCAGCAACCGGAAATAGTCCCGCAAATTTCGAGAACTCGCTCCGTTATCCTCTCGGCGTCGTCGCGGTCGCCCTTTTTGCTGTCGCCGATCAGCGACTCGACGAGGAGGTTGACCCGGGCGGTCTCCGCGGACGATCTCAGAGATTTCTCAGCTGCGTCGCCGAGAAGAAAGGCCTTTAGCAACCCGTTAAATGGGTTTGAGGAGAGAGGAGAGGAGGAAGAGGAGATAGAGATGGAGATGGGCTTTGCTGCTTCTGGGTTTGGCGGAACGGCGTCGTGGGGATTGGCGGAGTTTGAGCGGTGTGAGGCGGGGTTGAGGCAGAACAGGGGGTTGCTGAGCGTTTTGGATGGGAGTGGCGTTGGTGGAGGAGGCGGCAAGATCTGCGGTGGTAATGGCGGAGGGAGTGGTGGATCGGACGAAGGAGATGGTGGGAGCAATGGGTTTTGGGAATCGAATCAAGGCGGTGCCAGCACAGATTCGTACTACCAGAAAATGATCGACGCTAATCCTGGAAATCCCATGCTCCTTAGCAATTATGCTCGATTTTTGAAAGACTTTCGAGGGGATTTCGAAAAAGCCGAAGAATACTGCGGGAGAGCAATTCTGGCGAGCCCGAACGACGGAAATGTTCTGTCAATGTTTGCGGATTTGGTATGGCAGATTCATAAGGATGCTCCCAGAGCTCAGGCTTACTTTGATCAAGCTGTTCAAGCTGCCCCTGATGATAGTTATGTTCTAGCATCATATGCGAAATTCCTCTGGGATTCGGAGGAGGAGGAGGAAGACGAAGAGGAAGACGAGGAGGAGAATCTGAAAGAAGGGGCGAATAACAGAGCTTCGGCAACCAATTTGTTTCATGGAGTTCCTCCCGTACCACCTCCATTAGCTGCTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

325

Amino Acids

34.79

Weight (kDa)

4.46

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccBSI CCGCTC 1 cut(s) 373
AccII CGCG 2 cut(s) 139, 203
AclWI GGATC 1 cut(s) 493
AcsI RAATTY 2 cut(s) 99, 827
AcyI GRCGYC 3 cut(s) 23, 131, 347
AfaI GTAC 2 cut(s) 557, 948
AfiI CCNNNNNNNGG 2 cut(s) 266, 695
AgsI TTSAA 2 cut(s) 625, 785
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 7 cut(s) 15, 227, 758, 779, 788, 911, 962
AluI AGCT 7 cut(s) 15, 227, 758, 779, 788, 911, 962
Alw21I GWGCWC 3 cut(s) 17, 33, 760
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 493
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 7 cut(s) 43, 227, 323, 788, 962, 965, 968
ApoI RAATTY 2 cut(s) 99, 827
AsuC2I CCSGG 2 cut(s) 190, 191
AsuII TTCGAA 1 cut(s) 645
AvaI CYCGRG 1 cut(s) 189
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 3 cut(s) 17, 689, 760
BbsI GAAGAC 2 cut(s) 864, 876
Bbv12I GWGCWC 3 cut(s) 17, 33, 760
BbvI GCAGC 7 cut(s) 30, 214, 310, 775, 949, 952, 955
BccI CCATC 4 cut(s) 301, 307, 416, 494
BceAI ACGGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 585
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 190, 191
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 812
BglII AGATCT 1 cut(s) 453
BisI GCNGC 9 cut(s) 44, 47, 228, 324, 448, 789, 963, 966, 969
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 9 cut(s) 45, 48, 229, 325, 449, 790, 964, 967, 970
Bme1390I CCNGG 3 cut(s) 190, 191, 585
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 3 cut(s) 190, 191, 585
BmsI GCATC 2 cut(s) 736, 824
BpiI GAAGAC 2 cut(s) 864, 876
Bpu10I CCTNAGC 2 cut(s) 602, 759
Bpu1102I GCTNAGC 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 645
BpuMI CCSGG 2 cut(s) 190, 191
BsaHI GRCGYC 3 cut(s) 23, 131, 347
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 189, 201
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 695
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 2 cut(s) 38, 517
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 189, 201
BseGI GGATG 2 cut(s) 427, 751
BseLI CCNNNNNNNGG 2 cut(s) 266, 695
BseMI GCAATG 2 cut(s) 38, 517
BseMII CTCAG 4 cut(s) 226, 237, 401, 773
BseXI GCAGC 7 cut(s) 30, 214, 310, 775, 949, 952, 955
Bsh1236I CGCG 2 cut(s) 139, 203
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 3 cut(s) 17, 33, 760
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 3 cut(s) 26, 83, 190
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 266, 695
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 645
Bsp1286I GDGCHC 4 cut(s) 17, 33, 689, 760
Bsp143I GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
Bsp1720I GCTNAGC 1 cut(s) 410
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 4 cut(s) 225, 236, 402, 772
BspFNI CGCG 2 cut(s) 139, 203
BspLI GGNNCC 1 cut(s) 541
BspPI GGATC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 373
BsrDI GCAATG 2 cut(s) 38, 517
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 189, 201
BssMI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
BssNI GRCGYC 3 cut(s) 23, 131, 347
Bst2UI CCWGG 1 cut(s) 585
Bst6I CTCTTC 2 cut(s) 288, 858
BstACI GRCGYC 3 cut(s) 23, 131, 347
BstAPI GCANNNNNTGC 2 cut(s) 456, 821
BstBI TTCGAA 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 544, 685
BstDEI CTNAG 5 cut(s) 212, 223, 410, 602, 759
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 427, 751
BstFNI CGCG 2 cut(s) 139, 203
BstKTI GATC 7 cut(s) 76, 165, 211, 456, 488, 573, 775
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 9 cut(s) 151, 200, 456, 543, 680, 755, 785, 821, 968
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 3 cut(s) 188, 189, 583
BstUI CGCG 2 cut(s) 139, 203
BstV1I GCAGC 7 cut(s) 30, 214, 310, 775, 949, 952, 955
BstV2I GAAGAC 2 cut(s) 864, 876
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 427, 751
Cac8I GCNNGC 2 cut(s) 544, 685
Cfr10I RCCGGY 1 cut(s) 25
Cfr42I CCGCGG 1 cut(s) 204
Cfr9I CCCGGG 1 cut(s) 189
CseI GACGC 5 cut(s) 31, 120, 219, 336, 584
Csp6I GTAC 2 cut(s) 556, 947
CviAII CATG 2 cut(s) 595, 932
CviQI GTAC 2 cut(s) 556, 947
DdeI CTNAG 5 cut(s) 212, 223, 410, 602, 759
DpnI GATC 7 cut(s) 75, 164, 210, 455, 487, 572, 774
DpnII GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
Eam1104I CTCTTC 2 cut(s) 288, 858
EarI CTCTTC 2 cut(s) 288, 858
EciI GGCGGA 3 cut(s) 354, 377, 486
Ecl136II GAGCTC 2 cut(s) 15, 758
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 3 cut(s) 17, 689, 760
Eco31I GGTCTC 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 15, 758
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 2 cut(s) 15, 758
EcoRII CCWGG 1 cut(s) 583
EcoT38I GRGCYC 3 cut(s) 17, 689, 760
FaeI CATG 2 cut(s) 598, 935
FaiI YATR 9 cut(s) 596, 612, 730, 741, 807, 820, 822, 933, 973
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 594, 931
FauI CCCGC 3 cut(s) 102, 376, 659
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 9 cut(s) 44, 47, 228, 324, 448, 789, 963, 966, 969
FokI GGATG 2 cut(s) 434, 758
FriOI GRGCYC 3 cut(s) 17, 689, 760
Fsp4HI GCNGC 9 cut(s) 44, 47, 228, 324, 448, 789, 963, 966, 969
FspBI CTAG 1 cut(s) 812
GluI GCNGC 9 cut(s) 44, 47, 228, 324, 448, 789, 963, 966, 969
HaeIII GGCC 1 cut(s) 248
HapII CCGG 3 cut(s) 26, 83, 190
HgaI GACGC 5 cut(s) 31, 120, 219, 336, 584
Hin1I GRCGYC 3 cut(s) 23, 131, 347
Hin1II CATG 2 cut(s) 598, 935
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 8 cut(s) 59, 170, 524, 529, 551, 736, 839, 883
HpaII CCGG 3 cut(s) 26, 83, 190
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 5 cut(s) 73, 215, 490, 844, 888
Hpy188III TCNNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 8 cut(s) 25, 136, 139, 178, 235, 352, 578, 698
HpyAV CCTTC 2 cut(s) 488, 887
HpyCH4V TGCA 1 cut(s) 971
HpyF10VI GCNNNNNNNGC 9 cut(s) 151, 200, 456, 543, 680, 755, 785, 821, 968
HpyF3I CTNAG 5 cut(s) 212, 223, 410, 602, 759
Hsp92I GRCGYC 3 cut(s) 23, 131, 347
Hsp92II CATG 2 cut(s) 598, 935
Ksp22I TGATCA 1 cut(s) 772
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
LmnI GCTCC 5 cut(s) 12, 119, 507, 603, 754
Lsp1109I GCAGC 7 cut(s) 30, 214, 310, 775, 949, 952, 955
LweI GCATC 2 cut(s) 736, 824
MaeI CTAG 1 cut(s) 812
MalI GATC 7 cut(s) 75, 164, 210, 455, 487, 572, 774
MbiI CCGCTC 1 cut(s) 373
MboI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
MboII GAAGA 6 cut(s) 252, 305, 668, 869, 875, 881
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 4 cut(s) 17, 33, 689, 760
MluCI AATT 6 cut(s) 34, 99, 607, 675, 827, 922
MlyI GAGTC 2 cut(s) 53, 164
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 203, 227
MspI CCGG 3 cut(s) 26, 83, 190
MspR9I CCNGG 3 cut(s) 190, 191, 585
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 2 cut(s) 139, 203
MwoI GCNNNNNNNGC 9 cut(s) 151, 200, 456, 543, 680, 755, 785, 821, 968
NciI CCSGG 2 cut(s) 190, 191
NdeI CATATG 1 cut(s) 820
NdeII GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
NlaIII CATG 2 cut(s) 598, 935
NlaIV GGNNCC 1 cut(s) 541
NmeAIII GCCGAG 2 cut(s) 107, 261
NspV TTCGAA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PfeI GAWTC 6 cut(s) 524, 529, 551, 736, 839, 883
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 9 cut(s) 45, 48, 229, 325, 449, 790, 964, 967, 970
PleI GAGTC 2 cut(s) 53, 164
PpsI GAGTC 2 cut(s) 53, 164
Psp124BI GAGCTC 2 cut(s) 17, 760
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 541
PsuI RGATCY 1 cut(s) 453
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 2 cut(s) 557, 948
RsaNI GTAC 2 cut(s) 556, 947
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 2 cut(s) 17, 760
SacII CCGCGG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 9 cut(s) 44, 47, 228, 324, 448, 789, 963, 966, 969
Sau3AI GATC 7 cut(s) 73, 162, 208, 453, 485, 570, 772
SchI GAGTC 2 cut(s) 53, 164
ScrFI CCNGG 3 cut(s) 190, 191, 585
SduI GDGCHC 4 cut(s) 17, 33, 689, 760
SetI ASST 9 cut(s) 17, 185, 229, 760, 781, 790, 913, 955, 964
SfaNI GCATC 2 cut(s) 736, 824
Sfr303I CCGCGG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 645
SgrAI CRCCGGYG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 6 cut(s) 34, 99, 607, 675, 827, 922
SseBI AGGCCT 1 cut(s) 248
SspMI CTAG 1 cut(s) 812
SstI GAGCTC 2 cut(s) 17, 760
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 3 cut(s) 188, 189, 583
TaqI TCGA 9 cut(s) 20, 62, 104, 173, 527, 573, 616, 634, 645
TasI AATT 6 cut(s) 34, 99, 607, 675, 827, 922
TauI GCSGC 2 cut(s) 49, 450
TfiI GAWTC 6 cut(s) 524, 529, 551, 736, 839, 883
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseI GCWGC 7 cut(s) 43, 227, 323, 788, 962, 965, 968
TspDTI ATGAA 3 cut(s) 27, 728, 920
TspGWI ACGGA 3 cut(s) 25, 106, 711
TspMI CCCGGG 1 cut(s) 189
XapI RAATTY 2 cut(s) 99, 827
XmaI CCCGGG 1 cut(s) 189
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.