Rh2CG037200
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010827
Physical Location & Seq
Reverse (-)
2953590 .. 2955010
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG037200.1

Sequence Viewer

Length: 897 bp
ATGCTTCTACGAAGCTCATCGTCGCCGATACTAAACTCATGGCTCCCCCACTCCAAAGACTCGGGTCTCGGGTCGTCCTCCTCGCCCGAACCCGAAATGGTGCCCCAAATCCCCCGAACATGCGCCATTTCCCTCAGGTCTCCTCTTTCCGTATCTCGTAAAACAAACCAACACCTGATCACTCTCACGCGCGCCCGCTCCGACGCCGATCTCGGCGGCAGCCACCAGCGGAGGCCGCCGTTCGCGAACACGCTGAACGGGTTCGAGGAGATAGGAGAGGAGGCTGGTTACGGCGGAGGAGTGAGGAGGACGATGTCGTTGGGATTGGCCGAGGTGGAGGGGTGTGAGATGGGGACGAGAGAGAATATCGGGTTGTTGAGCGGTTTGGTTGGGGGTGGGGACGGCGGAGGCAAGATCTGCGGCGGTAATGGCGGCGGATCGGACGGTGGTGGCGAATCGGATCGGGGAAGCGCGACCGCCGAGACGCATTATCGGAATATGATCGAGGCTGATCCCGGCAATCCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAAAGAGGTTGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCAATCTTGGTTAACCCAAACGATGGAAATGTTTTATCCATGTATGCGGATTTGGTATGGCAAATTCACAAGGATGCTGCGAGAGCCGAGACTTATTTTGATCAAGCTGTTAAAGCTTCACCTGATGATTGTTATGTTCAAGCATCATATGCTCATTTCCTTTGGGATTCTGAGGAAGACGAAGATGAGGAGGAGGAGAAGGAGGTGAAAGAAGAAGGCAGCAACCGAGCACCAGCACACAAGTTGATTCACGGAGTTCCCCCTTCCCCGCCTCCGTTAGCTGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

298

Amino Acids

31.72

Weight (kDa)

4.89

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 158 - 202 4e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 626
AccBSI CCGCTC 2 cut(s) 198, 381
AccII CGCG 4 cut(s) 190, 192, 245, 473
AclWI GGATC 3 cut(s) 445, 468, 506
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 2 cut(s) 571, 666
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 1 cut(s) 626
AgsI TTSAA 1 cut(s) 743
AluBI AGCT 4 cut(s) 15, 710, 719, 884
AluI AGCT 4 cut(s) 15, 710, 719, 884
Alw21I GWGCWC 1 cut(s) 835
Alw26I GTCTC 4 cut(s) 71, 144, 476, 686
AlwI GGATC 3 cut(s) 445, 468, 506
Ama87I CYCGRG 2 cut(s) 61, 68
AoxI GGCC 2 cut(s) 233, 327
ApeKI GCWGC 6 cut(s) 219, 680, 822, 884, 887, 890
ApoI RAATTY 2 cut(s) 571, 666
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 4 cut(s) 125, 192, 194, 473
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 714, 820
AvaI CYCGRG 2 cut(s) 61, 68
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 835
BbvI GCAGC 6 cut(s) 231, 667, 834, 871, 874, 877
BccI CCATC 2 cut(s) 343, 620
BceAI ACGGC 3 cut(s) 223, 307, 418
BclI TGATCA 2 cut(s) 177, 703
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 4 cut(s) 71, 144, 476, 686
BglII AGATCT 1 cut(s) 414
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 516
BmeT110I CYCGRG 2 cut(s) 61, 68
BmiI GGNNCC 2 cut(s) 44, 102
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 2 cut(s) 667, 755
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 786
BpuMI CCSGG 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 71, 144
BsaJI CCNNGG 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse21I CCTNAGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMII CTCAG 2 cut(s) 148, 765
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 9 cut(s) 70, 132, 281, 293, 312, 319, 806, 809, 812
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 6 cut(s) 231, 667, 834, 871, 874, 877
Bsh1236I CGCG 4 cut(s) 190, 192, 245, 473
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 235, 329
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 835
BsiHKCI CYCGRG 2 cut(s) 61, 68
BsiSI CCGG 1 cut(s) 516
BslFI GGGAC 2 cut(s) 367, 413
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 4 cut(s) 71, 144, 476, 686
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 367, 413
BsnI GGCC 2 cut(s) 235, 329
Bso31I GGTCTC 2 cut(s) 71, 144
BsoBI CYCGRG 2 cut(s) 61, 68
Bsp1286I GDGCHC 2 cut(s) 105, 835
Bsp143I GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
Bsp68I TCGCGA 1 cut(s) 245
BspANI GGCC 2 cut(s) 235, 329
BspCNI CTCAG 2 cut(s) 147, 766
BspFNI CGCG 4 cut(s) 190, 192, 245, 473
BspLI GGNNCC 2 cut(s) 44, 102
BspPI GGATC 3 cut(s) 445, 468, 506
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 71, 144
BsrBI CCGCTC 2 cut(s) 198, 381
BssECI CCNNGG 1 cut(s) 330
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 446, 596
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 417, 752
BstC8I GCNNGC 2 cut(s) 192, 196
BstDEI CTNAG 5 cut(s) 134, 533, 546, 774, 894
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 4 cut(s) 190, 192, 245, 473
BstHHI GCGC 4 cut(s) 125, 192, 194, 473
BstKTI GATC 8 cut(s) 180, 211, 417, 440, 463, 504, 514, 706
BstMAI GTCTC 4 cut(s) 71, 144, 476, 686
BstMBI GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 7 cut(s) 235, 417, 429, 686, 716, 752, 890
BstNSI RCATGY 1 cut(s) 123
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 4 cut(s) 190, 192, 245, 473
BstV1I GCAGC 6 cut(s) 231, 667, 834, 871, 874, 877
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 2 cut(s) 235, 329
BtsCI GGATG 1 cut(s) 682
BtuMI TCGCGA 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 192, 196
CfoI GCGC 4 cut(s) 125, 192, 194, 473
CseI GACGC 2 cut(s) 212, 493
Csp6I GTAC 1 cut(s) 592
CviAII CATG 3 cut(s) 39, 120, 643
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 5 cut(s) 134, 533, 546, 774, 894
DpnI GATC 8 cut(s) 179, 210, 416, 439, 462, 503, 513, 705
DpnII GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
EciI GGCGGA 3 cut(s) 309, 420, 450
Eco31I GGTCTC 2 cut(s) 71, 144
Eco81I CCTNAGG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 61, 68
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 3 cut(s) 42, 123, 646
FaqI GGGAC 2 cut(s) 367, 413
FatI CATG 3 cut(s) 38, 119, 642
FauI CCCGC 2 cut(s) 203, 879
FauNDI CATATG 1 cut(s) 751
FbaI TGATCA 2 cut(s) 177, 703
FokI GGATG 1 cut(s) 689
GlaI GCGC 4 cut(s) 124, 191, 193, 472
HaeIII GGCC 2 cut(s) 235, 329
HapII CCGG 1 cut(s) 516
HgaI GACGC 2 cut(s) 212, 493
HhaI GCGC 4 cut(s) 125, 192, 194, 473
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 3 cut(s) 42, 123, 646
Hin6I GCGC 4 cut(s) 123, 190, 192, 471
HinP1I GCGC 4 cut(s) 123, 190, 192, 471
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 4 cut(s) 59, 455, 770, 850
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 516
HphI GGTGA 2 cut(s) 714, 820
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 5 cut(s) 202, 442, 460, 495, 775
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 2 cut(s) 25, 206
HpyAV CCTTC 3 cut(s) 796, 812, 876
HpyCH4III ACNGT 2 cut(s) 446, 596
HpyF10VI GCNNNNNNNGC 7 cut(s) 235, 417, 429, 686, 716, 752, 890
HpyF3I CTNAG 5 cut(s) 134, 533, 546, 774, 894
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 3 cut(s) 42, 123, 646
HspAI GCGC 4 cut(s) 123, 190, 192, 471
Ksp22I TGATCA 2 cut(s) 177, 703
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
LmnI GCTCC 2 cut(s) 48, 203
LpnPI CCDG 7 cut(s) 121, 188, 239, 270, 529, 738, 849
Lsp1109I GCAGC 6 cut(s) 231, 667, 834, 871, 874, 877
LweI GCATC 2 cut(s) 667, 755
MaeIII GTNAC 1 cut(s) 287
MalI GATC 8 cut(s) 179, 210, 416, 439, 462, 503, 513, 705
MbiI CCGCTC 2 cut(s) 198, 381
MboI GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
MboII GAAGA 4 cut(s) 599, 791, 797, 827
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 2 cut(s) 105, 835
MluCI AATT 2 cut(s) 571, 666
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 615, 714
MslI CAYNNNNRTG 1 cut(s) 675
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 516
MvnI CGCG 4 cut(s) 190, 192, 245, 473
MwoI GCNNNNNNNGC 7 cut(s) 235, 417, 429, 686, 716, 752, 890
NciI CCSGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 751
NdeII GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
NlaIII CATG 3 cut(s) 42, 123, 646
NlaIV GGNNCC 2 cut(s) 44, 102
NmeAIII GCCGAG 4 cut(s) 192, 355, 505, 715
NruI TCGCGA 1 cut(s) 245
NspI RCATGY 1 cut(s) 123
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 455, 770, 850
PflFI GACNNNGTC 1 cut(s) 313
PflMI CCANNNNNTGG 1 cut(s) 626
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 44, 102
PsuI RGATCY 1 cut(s) 414
PsyI GACNNNGTC 1 cut(s) 313
PteI GCGCGC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 2 cut(s) 615, 714
Sau3AI GATC 8 cut(s) 177, 208, 414, 437, 460, 501, 511, 703
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 105, 835
SfaNI GCATC 2 cut(s) 667, 755
SmiMI CAYNNNNRTG 1 cut(s) 675
Sse9I AATT 2 cut(s) 571, 666
StyD4I CCNGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 446, 596
TaqI TCGA 2 cut(s) 264, 504
TasI AATT 2 cut(s) 571, 666
TatI WGTACW 1 cut(s) 591
TauI GCSGC 4 cut(s) 219, 238, 423, 435
TfiI GAWTC 3 cut(s) 455, 770, 850
Tru1I TTAA 2 cut(s) 615, 714
Tru9I TTAA 2 cut(s) 615, 714
TseI GCWGC 6 cut(s) 219, 680, 822, 884, 887, 890
TspGWI ACGGA 3 cut(s) 139, 867, 870
Tth111I GACNNNGTC 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 626
XapI RAATTY 2 cut(s) 571, 666
XceI RCATGY 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.