Rroxscaffold_2G00152830
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010827
Physical Location & Seq
Forward (+)
89682735 .. 89684474
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152830.1

Sequence Viewer

Length: 903 bp
ATGCTTCTACGAAGCTCATCGTCGCCGATACTAAACTCATGGCTCACCCACTCCAAAGACTCGGGTCTCGGGTCGTCCTCCTCGCCCGAACCCGAAATGGTGCCCCAAATCCCCCGAACCTGCGCCATTTCCCTCAGGTCTCCTCTTTCCGTATCTTTTAAAACAAACCAACACCTGATCACTCTCACGCGCGCCGGCTCCGACGCCGATCTCGGCGGCAGCCACCAGCGGAGGCCGCAGTTCGCGAACACGTTGAACGGGTTCGAGGGGAGAGGAGAGGAGGCTGGTTACGGCGGAGGAGGAGGAGTGAGGAGGACGATGTCGTTGGGATTGGCGGAGGTGGAGGGGTTTGAGATGGGGACGAGAGAGAATATCGAGTTGTTGAGCGGTTTGGTTGGGGGAGGGGACGGCGGAGGCAAGATCTGCGGCGGTAATGGCGGCGGATCGGACGGTGGTGGCGAATCGGATCGGGGAAGCGCGAGCGCCGAGACGCATTATCGGAATATGATCGAGGCTGATCCCGGAAATGCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAGAGAGGTTGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCAATCTTGGCTAACCCAAACGATGGAAATGTTTTATCCATGTATGCGGATTTGGTATGGCAAATTCACAAGGATGCTGCCAGAGCCGAGACTTATTTCGATCAAGCTGTTAAAGCTTCACCTGATGATTGTTATGTTCAAGCATCATATGCTCATTTCCTTTGGGATTCTGAGGAAGACGAAGATGAGGAGGAGGAGAAGGAGGTGAAAGAAGAAGGCAGCAACCGAGCACCAGCACACAAGTTGGTTCACGGAGTTCCCCCTTCCCCGCCTCCGTTAGCTGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_17

Protein Analysis

300

Amino Acids

31.79

Weight (kDa)

4.83

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 160 - 204 1e-05 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32340 AT5G20190
fragaria_vesca FvH4_1g03080 FvH4_1g03080 FvH4_1g03080
malus_domestica MD02G1030000.v1.1 MD15G1171400.v1.1
prunus_persica Prupe.7G244700_v2.0.a1
pyrus_communis pycom02g02500 pycom15g15300
rosa_chinensis RchiOBHm_Chr2g0088211
rosa_laevigata RLG00000015932
rosa_multiflora Rmu_sc0003275.1_g000071
rosa_roxburghii Rroxscaffold_2G00152830
rosa_rugosa Rorug01G0481800
rosa_samantha Rh2AG036900 Rh2BG036100 Rh2CG037200 Rh2DG036600
rosa_wichuraiana Rw2G002910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 632
AccBSI CCGCTC 1 cut(s) 387
AccII CGCG 4 cut(s) 190, 192, 245, 479
AclWI GGATC 3 cut(s) 451, 474, 512
AcsI RAATTY 2 cut(s) 577, 672
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 256, 749
AluBI AGCT 4 cut(s) 15, 716, 725, 890
AluI AGCT 4 cut(s) 15, 716, 725, 890
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 4 cut(s) 71, 144, 482, 692
AlwI GGATC 3 cut(s) 451, 474, 512
Ama87I CYCGRG 2 cut(s) 61, 68
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 6 cut(s) 219, 686, 828, 890, 893, 896
ApoI RAATTY 2 cut(s) 577, 672
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 5 cut(s) 125, 192, 194, 479, 485
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 3 cut(s) 37, 720, 826
AvaI CYCGRG 2 cut(s) 61, 68
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 6 cut(s) 231, 673, 840, 877, 880, 883
BccI CCATC 2 cut(s) 349, 626
BceAI ACGGC 2 cut(s) 307, 424
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 4 cut(s) 71, 144, 482, 692
BfoI RGCGCY 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 420
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 1 cut(s) 522
BmeT110I CYCGRG 2 cut(s) 61, 68
BmiI GGNNCC 2 cut(s) 102, 199
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 673, 761
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 792
BpuMI CCSGG 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 71, 144
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 194
Bse21I CCTNAGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 3 cut(s) 148, 574, 771
BsePI GCGCGC 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 6 cut(s) 231, 673, 840, 877, 880, 883
Bsh1236I CGCG 4 cut(s) 190, 192, 245, 479
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 841
BsiHKCI CYCGRG 2 cut(s) 61, 68
BsiSI CCGG 2 cut(s) 195, 522
BslFI GGGAC 2 cut(s) 373, 419
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 4 cut(s) 71, 144, 482, 692
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 2 cut(s) 373, 419
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 2 cut(s) 71, 144
BsoBI CYCGRG 2 cut(s) 61, 68
Bsp1286I GDGCHC 2 cut(s) 105, 841
Bsp143I GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
Bsp68I TCGCGA 1 cut(s) 245
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 3 cut(s) 147, 573, 772
BspFNI CGCG 4 cut(s) 190, 192, 245, 479
BspLI GGNNCC 2 cut(s) 102, 199
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 451, 474, 512
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 71, 144
BsrBI CCGCTC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 452, 602
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 423, 758
BstC8I GCNNGC 3 cut(s) 192, 196, 481
BstDEI CTNAG 6 cut(s) 134, 539, 552, 560, 780, 900
BstF5I GGATG 1 cut(s) 688
BstFNI CGCG 4 cut(s) 190, 192, 245, 479
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 5 cut(s) 125, 192, 194, 479, 485
BstKTI GATC 8 cut(s) 180, 211, 423, 446, 469, 510, 520, 712
BstMAI GTCTC 4 cut(s) 71, 144, 482, 692
BstMBI GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
BstMWI GCNNNNNNNGC 8 cut(s) 235, 423, 435, 617, 692, 722, 758, 896
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 4 cut(s) 190, 192, 245, 479
BstV1I GCAGC 6 cut(s) 231, 673, 840, 877, 880, 883
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 688
BtuMI TCGCGA 1 cut(s) 245
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 3 cut(s) 192, 196, 481
CfoI GCGC 5 cut(s) 125, 192, 194, 479, 485
Cfr10I RCCGGY 1 cut(s) 194
CseI GACGC 2 cut(s) 212, 499
Csp6I GTAC 1 cut(s) 598
CviAII CATG 2 cut(s) 39, 649
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 6 cut(s) 134, 539, 552, 560, 780, 900
DpnI GATC 8 cut(s) 179, 210, 422, 445, 468, 509, 519, 711
DpnII GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
DraI TTTAAA 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 4 cut(s) 309, 350, 426, 456
Eco31I GGTCTC 2 cut(s) 71, 144
Eco81I CCTNAGG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 61, 68
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 2 cut(s) 42, 652
FaiI YATR 9 cut(s) 40, 506, 549, 650, 654, 667, 744, 757, 759
FaqI GGGAC 2 cut(s) 373, 419
FatI CATG 2 cut(s) 38, 648
FauI CCCGC 1 cut(s) 885
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 177
FokI GGATG 1 cut(s) 695
GlaI GCGC 5 cut(s) 124, 191, 193, 478, 484
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 195, 522
HgaI GACGC 2 cut(s) 212, 499
HhaI GCGC 5 cut(s) 125, 192, 194, 479, 485
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 42, 652
Hin6I GCGC 5 cut(s) 123, 190, 192, 477, 483
HinP1I GCGC 5 cut(s) 123, 190, 192, 477, 483
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 3 cut(s) 59, 461, 776
HpaII CCGG 2 cut(s) 195, 522
HphI GGTGA 3 cut(s) 37, 720, 826
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 6 cut(s) 202, 448, 466, 501, 563, 781
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 2 cut(s) 25, 206
HpyAV CCTTC 3 cut(s) 802, 818, 882
HpyCH4III ACNGT 2 cut(s) 452, 602
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 8 cut(s) 235, 423, 435, 617, 692, 722, 758, 896
HpyF3I CTNAG 6 cut(s) 134, 539, 552, 560, 780, 900
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 42, 652
HspAI GCGC 5 cut(s) 123, 190, 192, 477, 483
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 6 cut(s) 231, 673, 840, 877, 880, 883
LweI GCATC 2 cut(s) 673, 761
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 287
MalI GATC 8 cut(s) 179, 210, 422, 445, 468, 509, 519, 711
MbiI CCGCTC 1 cut(s) 387
MboI GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
MboII GAAGA 4 cut(s) 605, 797, 803, 833
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 105, 841
MluCI AATT 2 cut(s) 577, 672
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 159, 720
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 2 cut(s) 195, 522
MspR9I CCNGG 1 cut(s) 522
MvnI CGCG 4 cut(s) 190, 192, 245, 479
MwoI GCNNNNNNNGC 8 cut(s) 235, 423, 435, 617, 692, 722, 758, 896
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 757
NdeII GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 2 cut(s) 42, 652
NlaIV GGNNCC 2 cut(s) 102, 199
NmeAIII GCCGAG 3 cut(s) 192, 511, 721
NruI TCGCGA 1 cut(s) 245
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 461, 776
PflFI GACNNNGTC 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 632
PfoI TCCNGGA 1 cut(s) 520
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 102, 199
PsuI RGATCY 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 319
PteI GCGCGC 1 cut(s) 190
RruI TCGCGA 1 cut(s) 245
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 2 cut(s) 159, 720
Sau3AI GATC 8 cut(s) 177, 208, 420, 443, 466, 507, 517, 709
ScaI AGTACT 1 cut(s) 599
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 2 cut(s) 105, 841
SfaNI GCATC 2 cut(s) 673, 761
SmiMI CAYNNNNRTG 1 cut(s) 681
Sse9I AATT 2 cut(s) 577, 672
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 452, 602
TaiI ACGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 264, 375, 510, 708
TasI AATT 2 cut(s) 577, 672
TatI WGTACW 1 cut(s) 597
TauI GCSGC 4 cut(s) 219, 238, 429, 441
TfiI GAWTC 2 cut(s) 461, 776
Tru1I TTAA 2 cut(s) 159, 720
Tru9I TTAA 2 cut(s) 159, 720
TseI GCWGC 6 cut(s) 219, 686, 828, 890, 893, 896
TspGWI ACGGA 3 cut(s) 139, 873, 876
Tth111I GACNNNGTC 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 632
XapI RAATTY 2 cut(s) 577, 672
XmnI GAANNNNTTC 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.